Wall clock time and date at job start Tue Mar 31 2020 06:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46895 * 110.99966 * 2 1 4 4 C 1.46895 * 110.99920 * 123.95536 * 2 1 3 5 5 C 1.50704 * 109.47308 * 169.99977 * 4 2 1 6 6 C 1.38423 * 119.92141 * 269.97800 * 5 4 2 7 7 C 1.38378 * 120.30451 * 179.97438 * 6 5 4 8 8 C 1.37946 * 120.14980 * 359.77168 * 7 6 5 9 9 C 1.39647 * 119.84569 * 0.52390 * 8 7 6 10 10 C 1.47816 * 120.15083 * 179.72006 * 9 8 7 11 11 N 1.32580 * 119.99104 * 136.24521 * 10 9 8 12 12 C 1.31746 * 121.72463 * 180.02562 * 11 10 9 13 13 C 1.38868 * 121.50266 * 359.97438 * 12 11 10 14 14 C 1.36892 * 119.79895 * 0.27801 * 13 12 11 15 15 C 1.41122 * 118.39205 * 359.49139 * 14 13 12 16 16 C 1.40888 * 120.71668 * 180.23912 * 15 14 13 17 17 H 1.08001 * 119.99830 * 150.79321 * 16 15 14 18 18 C 1.40081 * 119.99856 * 330.78965 * 16 15 14 19 19 N 1.30768 * 119.99682 * 162.86093 * 18 16 15 20 20 Si 1.86795 * 120.00036 * 342.86615 * 18 16 15 21 21 H 1.48493 * 109.47365 * 90.56152 * 20 18 16 22 22 H 1.48496 * 109.47065 * 210.56463 * 20 18 16 23 23 H 1.48500 * 109.47062 * 330.56024 * 20 18 16 24 24 C 1.37891 * 119.92432 * 89.99478 * 5 4 2 25 25 H 1.09002 * 109.46848 * 296.04316 * 1 2 3 26 26 H 1.08996 * 109.47015 * 56.04599 * 1 2 3 27 27 H 1.08995 * 109.46914 * 176.04969 * 1 2 3 28 28 H 1.09007 * 109.47059 * 183.95375 * 3 2 1 29 29 H 1.09003 * 109.47282 * 303.95539 * 3 2 1 30 30 H 1.08998 * 109.47245 * 63.95778 * 3 2 1 31 31 H 1.09000 * 109.47569 * 50.00021 * 4 2 1 32 32 H 1.09005 * 109.47477 * 290.00125 * 4 2 1 33 33 H 1.08002 * 119.84758 * 359.97438 * 6 5 4 34 34 H 1.08002 * 119.92208 * 180.02562 * 7 6 5 35 35 H 1.08002 * 120.07445 * 180.24758 * 8 7 6 36 36 H 1.07994 * 119.24841 * 180.02562 * 12 11 10 37 37 H 1.07995 * 120.09961 * 180.02562 * 13 12 11 38 38 H 1.07998 * 120.80191 * 179.69768 * 14 13 12 39 39 H 0.96998 * 120.00330 * 180.02562 * 19 18 16 40 40 H 1.08000 * 120.07863 * 359.97438 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.4818 -0.9525 0.9728 6 6 3.9683 -2.0600 0.2998 7 6 5.3316 -2.2389 0.1435 8 6 6.2152 -1.3108 0.6542 9 6 5.7315 -0.1945 1.3397 10 6 6.6725 0.8010 1.8951 11 7 6.4277 2.0961 1.7523 12 6 7.2432 3.0124 2.2331 13 6 8.4022 2.6664 2.9153 14 6 8.7181 1.3464 3.0939 15 6 7.8374 0.3703 2.5807 16 6 8.1121 -1.0022 2.7411 17 1 7.3004 -1.7124 2.7963 18 6 9.4380 -1.4455 2.8287 19 7 9.6995 -2.6353 3.3043 20 14 10.8325 -0.3372 2.2664 21 1 11.3052 0.4829 3.4105 22 1 11.9522 -1.1697 1.7580 23 1 10.3488 0.5562 1.1833 24 6 4.3540 -0.0199 1.4933 25 1 -0.3633 0.4512 0.9234 26 1 -0.3633 0.5740 -0.8524 27 1 -0.3633 -1.0252 -0.0708 28 1 3.0829 1.3432 -0.0709 29 1 1.5898 1.9163 -0.8524 30 1 1.7045 1.8723 0.9233 31 1 1.5090 -1.7407 1.1756 32 1 1.7975 -0.2248 2.0628 33 1 3.2808 -2.7877 -0.1052 34 1 5.7044 -3.1050 -0.3831 35 1 7.2788 -1.4496 0.5281 36 1 7.0045 4.0565 2.0941 37 1 9.0543 3.4363 3.3003 38 1 9.6177 1.0591 3.6177 39 1 10.6176 -2.9423 3.3654 40 1 3.9731 0.8438 2.0180 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236414868.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:38 Heat of formation + Delta-G solvation = 37.626929 kcal Electronic energy + Delta-G solvation = -21515.258317 eV Core-core repulsion = 18486.531654 eV Total energy + Delta-G solvation = -3028.726664 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.91497 -39.77758 -37.80518 -35.95659 -33.64862 -33.28693 -32.25017 -30.51669 -28.43984 -27.61357 -27.38738 -24.69246 -23.63796 -23.01619 -22.42076 -21.15331 -19.46294 -18.05402 -17.40567 -16.81453 -16.63000 -16.36587 -16.18311 -15.97542 -15.37427 -15.35564 -15.04614 -14.51270 -14.33122 -13.98681 -13.80690 -13.58003 -13.28209 -13.22269 -13.16636 -12.90673 -12.65872 -12.58775 -12.41698 -12.26673 -11.95098 -11.72674 -11.62904 -11.37395 -10.42134 -10.06570 -9.94094 -9.61777 -9.23255 -9.09152 -8.98623 -6.53231 0.15397 0.60045 0.69953 1.00402 1.20708 1.35195 1.42639 2.03534 2.57538 2.85116 3.30733 3.51957 3.74691 3.90237 4.07216 4.24734 4.30712 4.31453 4.40482 4.45089 4.50161 4.56188 4.61139 4.66160 4.72971 4.74514 4.82559 4.88087 5.01784 5.04951 5.08952 5.12665 5.27311 5.32293 5.53885 5.61970 5.73512 5.76304 5.93328 5.96667 6.03828 6.13993 6.20367 6.28446 6.55167 6.64682 7.55607 8.05653 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.021766 B = 0.005225 C = 0.004415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.082577 B = 5358.066667 C = 6340.161368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.552 5.552 3 C 0.024 3.976 4 C 0.103 3.897 5 C -0.089 4.089 6 C -0.106 4.106 7 C -0.129 4.129 8 C -0.106 4.106 9 C -0.017 4.017 10 C 0.021 3.979 11 N -0.460 5.460 12 C -0.037 4.037 13 C -0.120 4.120 14 C -0.226 4.226 15 C 0.041 3.959 16 C -0.442 4.442 17 H 0.073 0.927 18 C 0.055 3.945 19 N -0.823 5.823 20 Si 0.958 3.042 21 H -0.251 1.251 22 H -0.272 1.272 23 H -0.264 1.264 24 C -0.103 4.103 25 H 0.027 0.973 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.052 0.948 29 H 0.078 0.922 30 H 0.024 0.976 31 H 0.101 0.899 32 H 0.037 0.963 33 H 0.146 0.854 34 H 0.139 0.861 35 H 0.108 0.892 36 H 0.162 0.838 37 H 0.145 0.855 38 H 0.116 0.884 39 H 0.299 0.701 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.889 3.024 -4.580 11.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.276 5.276 3 C -0.124 4.124 4 C -0.024 4.024 5 C -0.090 4.090 6 C -0.124 4.124 7 C -0.147 4.147 8 C -0.125 4.125 9 C -0.018 4.018 10 C -0.119 4.119 11 N -0.168 5.168 12 C -0.196 4.196 13 C -0.139 4.139 14 C -0.252 4.252 15 C 0.037 3.963 16 C -0.471 4.471 17 H 0.091 0.909 18 C -0.163 4.163 19 N -0.447 5.447 20 Si 0.782 3.218 21 H -0.176 1.176 22 H -0.198 1.198 23 H -0.188 1.188 24 C -0.122 4.122 25 H 0.046 0.954 26 H 0.096 0.904 27 H 0.099 0.901 28 H 0.071 0.929 29 H 0.097 0.903 30 H 0.043 0.957 31 H 0.119 0.881 32 H 0.056 0.944 33 H 0.164 0.836 34 H 0.156 0.844 35 H 0.126 0.874 36 H 0.179 0.821 37 H 0.163 0.837 38 H 0.134 0.866 39 H 0.110 0.890 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -10.345 2.822 -5.352 11.984 hybrid contribution 1.566 0.406 1.374 2.122 sum -8.779 3.228 -3.979 10.165 Atomic orbital electron populations 1.22458 0.85592 1.03225 1.01019 1.61997 1.09017 1.13937 1.42650 1.22400 1.00679 0.88750 1.00584 1.21007 0.90257 0.99569 0.91600 1.19749 0.95318 0.94980 0.98941 1.21201 0.94947 0.97759 0.98509 1.21243 0.93579 0.99194 1.00676 1.21356 0.99957 0.94154 0.97077 1.18470 0.92373 0.93793 0.97142 1.19905 0.97841 0.89785 1.04327 1.67174 1.31007 1.01490 1.17109 1.22417 0.94219 0.98459 1.04493 1.21766 0.97981 0.96180 0.98010 1.21421 1.02625 0.94091 1.07013 1.18643 0.92785 0.94316 0.90605 1.19361 0.93808 0.92132 1.41770 0.90907 1.26764 1.01767 0.96450 0.91344 1.69655 1.24308 1.19548 1.31235 0.85635 0.77204 0.78591 0.80375 1.17619 1.19794 1.18832 1.21030 0.91833 0.98641 1.00738 0.95415 0.90412 0.90108 0.92890 0.90288 0.95732 0.88079 0.94441 0.83619 0.84366 0.87359 0.82109 0.83703 0.86649 0.89035 0.87630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 9.57 127.69 1.22 1.66 16 2 N -0.55 -13.65 5.01 -953.46 -4.78 -18.42 16 3 C 0.02 0.63 9.13 127.69 1.17 1.80 16 4 C 0.10 2.68 5.11 85.56 0.44 3.12 16 5 C -0.09 -2.96 4.88 -19.90 -0.10 -3.06 16 6 C -0.11 -3.33 9.70 22.35 0.22 -3.12 16 7 C -0.13 -4.59 10.03 22.23 0.22 -4.37 16 8 C -0.11 -4.62 7.87 22.54 0.18 -4.45 16 9 C -0.02 -0.77 5.26 -20.05 -0.11 -0.88 16 10 C 0.02 1.04 6.43 42.46 0.27 1.32 16 11 N -0.46 -21.50 10.15 -182.93 -1.86 -23.36 16 12 C -0.04 -1.53 11.16 84.86 0.95 -0.59 16 13 C -0.12 -4.83 10.03 22.10 0.22 -4.60 16 14 C -0.23 -10.49 7.32 22.66 0.17 -10.33 16 15 C 0.04 2.11 5.12 -21.02 -0.11 2.00 16 16 C -0.44 -23.57 7.21 23.37 0.17 -23.40 16 17 H 0.07 4.21 6.72 -2.91 -0.02 4.19 16 18 C 0.05 2.76 5.44 85.30 0.46 3.23 16 19 N -0.82 -42.16 13.92 21.85 0.30 -41.85 16 20 Si 0.96 40.60 24.53 68.60 1.68 42.28 16 21 H -0.25 -9.91 6.47 99.48 0.64 -9.27 16 22 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 23 H -0.26 -11.83 6.99 99.48 0.70 -11.14 16 24 C -0.10 -4.10 7.57 22.54 0.17 -3.93 16 25 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 26 H 0.08 1.21 8.12 -2.39 -0.02 1.19 16 27 H 0.08 1.21 8.12 -2.39 -0.02 1.19 16 28 H 0.05 1.70 6.16 -2.38 -0.01 1.68 16 29 H 0.08 1.77 8.12 -2.39 -0.02 1.75 16 30 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.10 2.18 8.01 -2.39 -0.02 2.16 16 32 H 0.04 0.99 8.06 -2.38 -0.02 0.97 16 33 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16 34 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16 35 H 0.11 5.11 6.75 -2.91 -0.02 5.09 16 36 H 0.16 5.35 8.06 -2.91 -0.02 5.32 16 37 H 0.15 4.58 8.06 -2.91 -0.02 4.55 16 38 H 0.12 5.17 4.52 -2.91 -0.01 5.16 16 39 H 0.30 13.67 8.29 -92.71 -0.77 12.90 16 40 H 0.11 4.25 8.03 -2.91 -0.02 4.22 16 Total: -1.00 -60.10 325.43 1.85 -58.25 By element: Atomic # 1 Polarization: 27.75 SS G_CDS: 0.96 Total: 28.70 kcal Atomic # 6 Polarization: -51.14 SS G_CDS: 5.54 Total: -45.60 kcal Atomic # 7 Polarization: -77.31 SS G_CDS: -6.33 Total: -83.64 kcal Atomic # 14 Polarization: 40.60 SS G_CDS: 1.68 Total: 42.28 kcal Total: -60.10 1.85 -58.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236414868.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.873 kcal (2) G-P(sol) polarization free energy of solvation -60.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds