Wall clock time and date at job start Tue Mar 31 2020 06:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46897 * 111.00136 * 2 1 4 4 C 1.46899 * 110.99797 * 123.95100 * 2 1 3 5 5 C 1.50706 * 109.46803 * 66.04695 * 4 2 1 6 6 C 1.38344 * 119.93980 * 90.00258 * 5 4 2 7 7 C 1.38303 * 120.24709 * 179.97438 * 6 5 4 8 8 C 1.38024 * 120.12459 * 0.02562 * 7 6 5 9 9 C 1.39331 * 119.87462 * 359.97438 * 8 7 6 10 10 C 1.48373 * 120.12181 * 180.02562 * 9 8 7 11 11 C 1.38894 * 119.61297 * 4.72329 * 10 9 8 12 12 C 1.40845 * 118.76468 * 180.27572 * 11 10 9 13 13 C 1.41527 * 120.99077 * 180.02562 * 12 11 10 14 14 H 1.08003 * 119.99845 * 23.15962 * 13 12 11 15 15 C 1.40044 * 120.00211 * 203.16684 * 13 12 11 16 16 N 1.30741 * 120.00100 * 17.27873 * 15 13 12 17 17 Si 1.86800 * 120.00015 * 197.28598 * 15 13 12 18 18 H 1.48497 * 109.47299 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47437 * 119.99681 * 17 15 13 20 20 H 1.48504 * 109.46931 * 239.99594 * 17 15 13 21 21 C 1.41140 * 118.02489 * 0.02562 * 12 11 10 22 22 C 1.37744 * 119.07351 * 0.02562 * 21 12 11 23 23 N 1.31921 * 121.15453 * 359.97438 * 22 21 12 24 24 C 1.37994 * 119.93983 * 270.27460 * 5 4 2 25 25 H 1.08996 * 109.47348 * 296.04960 * 1 2 3 26 26 H 1.09000 * 109.46900 * 56.04787 * 1 2 3 27 27 H 1.08993 * 109.47334 * 176.04655 * 1 2 3 28 28 H 1.09006 * 109.47077 * 183.95202 * 3 2 1 29 29 H 1.08993 * 109.47251 * 303.95013 * 3 2 1 30 30 H 1.09003 * 109.47211 * 63.95216 * 3 2 1 31 31 H 1.09002 * 109.47564 * 306.04955 * 4 2 1 32 32 H 1.09003 * 109.47510 * 186.04444 * 4 2 1 33 33 H 1.08001 * 119.87693 * 359.97236 * 6 5 4 34 34 H 1.08005 * 119.93529 * 179.97438 * 7 6 5 35 35 H 1.07999 * 120.06652 * 180.02562 * 8 7 6 36 36 H 1.07999 * 120.61942 * 0.26040 * 11 10 9 37 37 H 0.96990 * 119.99887 * 180.02562 * 16 15 13 38 38 H 1.07997 * 120.46673 * 180.02562 * 21 12 11 39 39 H 1.07996 * 119.42324 * 180.02562 * 22 21 12 40 40 H 1.07999 * 120.06294 * 0.02562 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 1.6368 -2.2204 0.9729 6 6 2.4954 -3.0713 0.3000 7 6 2.1729 -4.4073 0.1455 8 6 0.9911 -4.8989 0.6622 9 6 0.1227 -4.0465 1.3408 10 6 -1.1488 -4.5692 1.8989 11 6 -1.4220 -5.9291 1.8275 12 6 -2.6369 -6.4052 2.3577 13 6 -2.9629 -7.7816 2.3107 14 1 -2.1790 -8.5195 2.2245 15 6 -4.3019 -8.1867 2.3756 16 7 -5.2575 -7.3257 2.1412 17 14 -4.7227 -9.9571 2.7975 18 1 -3.4705 -10.7249 3.0162 19 1 -5.5458 -9.9894 4.0330 20 1 -5.4862 -10.5647 1.6780 21 6 -3.5197 -5.4688 2.9372 22 6 -3.1629 -4.1386 2.9614 23 7 -2.0155 -3.7304 2.4544 24 6 0.4501 -2.6999 1.4886 25 1 -0.3634 0.4513 0.9232 26 1 -0.3633 0.5740 -0.8525 27 1 -0.3633 -1.0251 -0.0708 28 1 3.0828 1.3432 -0.0708 29 1 1.5899 1.9163 -0.8524 30 1 1.7044 1.8724 0.9233 31 1 1.5610 -0.3872 2.0629 32 1 3.0797 -0.6611 1.1757 33 1 3.4209 -2.6908 -0.1063 34 1 2.8467 -5.0670 -0.3811 35 1 0.7404 -5.9424 0.5414 36 1 -0.7160 -6.6089 1.3738 37 1 -6.1848 -7.6063 2.1865 38 1 -4.4617 -5.7906 3.3559 39 1 -3.8340 -3.4173 3.4039 40 1 -0.2218 -2.0338 2.0096 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236415887.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:43 Heat of formation + Delta-G solvation = 48.689063 kcal Electronic energy + Delta-G solvation = -20850.769102 eV Core-core repulsion = 17822.522128 eV Total energy + Delta-G solvation = -3028.246974 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.40499 -38.12489 -36.77395 -34.21666 -32.04009 -31.18142 -30.63908 -28.36170 -27.49377 -26.67647 -25.88019 -23.02558 -22.44161 -21.66532 -20.63738 -19.83621 -17.49686 -16.18705 -15.62532 -15.44656 -15.33509 -15.21850 -14.69882 -14.32844 -14.13989 -13.74419 -13.43604 -12.86642 -12.75223 -12.54455 -12.41046 -12.31349 -12.08792 -11.81119 -11.64162 -11.52671 -11.40613 -11.30093 -11.00451 -10.71809 -10.53052 -10.28671 -9.87371 -9.49054 -8.80417 -8.54820 -8.23464 -8.11177 -8.03623 -7.18427 -6.90294 -4.65074 1.50017 1.78818 2.69353 2.89404 2.99417 3.04716 3.20796 3.81073 3.95202 4.36830 4.67753 4.91717 5.07379 5.14736 5.21171 5.32209 5.43545 5.46804 5.58795 5.64875 5.67386 5.70231 5.73323 5.84182 6.01523 6.06264 6.12040 6.36024 6.43787 6.67200 6.74628 6.84123 6.85425 6.90937 6.99524 7.03467 7.07059 7.21103 7.27441 7.42692 7.47239 7.80044 8.04925 8.39522 8.67461 8.68735 9.52225 10.00784 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.030975 B = 0.003573 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.728378 B = 7834.108850 C = 8493.555965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.542 5.542 3 C 0.025 3.975 4 C 0.098 3.902 5 C -0.093 4.093 6 C -0.109 4.109 7 C -0.127 4.127 8 C -0.109 4.109 9 C -0.014 4.014 10 C 0.151 3.849 11 C -0.251 4.251 12 C 0.126 3.874 13 C -0.455 4.455 14 H 0.082 0.918 15 C 0.077 3.923 16 N -0.784 5.784 17 Si 0.912 3.088 18 H -0.259 1.259 19 H -0.270 1.270 20 H -0.273 1.273 21 C -0.210 4.210 22 C 0.087 3.913 23 N -0.564 5.564 24 C -0.084 4.084 25 H 0.026 0.974 26 H 0.064 0.936 27 H 0.079 0.921 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.023 0.977 31 H 0.042 0.958 32 H 0.079 0.921 33 H 0.115 0.885 34 H 0.118 0.882 35 H 0.125 0.875 36 H 0.105 0.895 37 H 0.283 0.717 38 H 0.127 0.873 39 H 0.122 0.878 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.615 8.382 -2.238 12.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.266 5.266 3 C -0.124 4.124 4 C -0.029 4.029 5 C -0.093 4.093 6 C -0.128 4.128 7 C -0.145 4.145 8 C -0.128 4.128 9 C -0.015 4.015 10 C 0.017 3.983 11 C -0.274 4.274 12 C 0.118 3.882 13 C -0.486 4.486 14 H 0.101 0.899 15 C -0.142 4.142 16 N -0.409 5.409 17 Si 0.736 3.264 18 H -0.182 1.182 19 H -0.195 1.195 20 H -0.198 1.198 21 C -0.233 4.233 22 C -0.065 4.065 23 N -0.279 5.279 24 C -0.104 4.104 25 H 0.045 0.955 26 H 0.083 0.917 27 H 0.098 0.902 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.042 0.958 31 H 0.060 0.940 32 H 0.097 0.903 33 H 0.133 0.867 34 H 0.136 0.864 35 H 0.143 0.857 36 H 0.123 0.877 37 H 0.094 0.906 38 H 0.145 0.855 39 H 0.139 0.861 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 9.695 9.106 -2.645 13.562 hybrid contribution -0.978 -1.356 0.822 1.863 sum 8.717 7.750 -1.823 11.806 Atomic orbital electron populations 1.22484 0.86814 1.03453 1.00099 1.62013 1.08596 1.13080 1.42919 1.22380 1.00533 0.89073 1.00388 1.21018 0.99838 0.90490 0.91592 1.19568 0.95349 0.94484 0.99923 1.20870 0.99412 0.93355 0.99198 1.20954 0.97066 0.95466 1.00971 1.21311 0.93861 1.00013 0.97645 1.18792 0.93126 0.93005 0.96542 1.19122 0.92180 0.90117 0.96862 1.21865 1.01282 0.94475 1.09804 1.17773 0.89975 0.93691 0.86782 1.19641 0.92555 0.92233 1.44140 0.89948 1.25984 0.96135 1.00208 0.91904 1.69773 1.01473 1.36694 1.32982 0.86198 0.79554 0.81677 0.78998 1.18214 1.19519 1.19795 1.22273 1.02792 0.93189 1.04998 1.21946 0.92806 0.94302 0.97492 1.67251 1.04685 1.38582 1.17350 1.21171 0.95290 0.95198 0.98696 0.95534 0.91740 0.90222 0.91539 0.91455 0.95806 0.94025 0.90304 0.86736 0.86407 0.85667 0.87735 0.90562 0.85529 0.86077 0.85406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.12 60.06 0.55 0.80 16 2 N -0.54 -6.81 5.01 -252.72 -1.27 -8.07 16 3 C 0.02 0.24 9.57 60.06 0.57 0.81 16 4 C 0.10 1.24 5.12 -4.97 -0.03 1.21 16 5 C -0.09 -1.41 4.89 -104.67 -0.51 -1.92 16 6 C -0.11 -1.56 9.69 -39.52 -0.38 -1.95 16 7 C -0.13 -1.88 10.03 -39.64 -0.40 -2.27 16 8 C -0.11 -1.92 9.41 -39.25 -0.37 -2.29 16 9 C -0.01 -0.28 5.87 -104.90 -0.62 -0.89 16 10 C 0.15 3.54 6.72 -83.04 -0.56 2.98 16 11 C -0.25 -6.14 9.24 -38.35 -0.35 -6.50 16 12 C 0.13 3.30 5.61 -106.56 -0.60 2.70 16 13 C -0.45 -11.69 9.12 -37.65 -0.34 -12.03 16 14 H 0.08 2.03 7.90 -52.48 -0.41 1.61 16 15 C 0.08 1.87 5.20 -17.34 -0.09 1.78 16 16 N -0.78 -19.52 10.90 55.55 0.61 -18.91 16 17 Si 0.91 17.91 29.59 -169.99 -5.03 12.88 16 18 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 19 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 20 H -0.27 -5.28 7.11 56.52 0.40 -4.87 16 21 C -0.21 -5.38 8.80 -38.66 -0.34 -5.72 16 22 C 0.09 2.07 11.15 -17.69 -0.20 1.87 16 23 N -0.56 -13.53 9.41 -9.94 -0.09 -13.62 16 24 C -0.08 -1.52 7.47 -39.25 -0.29 -1.81 16 25 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.74 8.12 -51.93 -0.42 0.32 16 27 H 0.08 1.22 6.15 -51.93 -0.32 0.91 16 28 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 29 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 30 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.04 0.53 8.06 -51.93 -0.42 0.11 16 32 H 0.08 0.86 8.01 -51.93 -0.42 0.45 16 33 H 0.11 1.37 8.06 -52.49 -0.42 0.94 16 34 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 35 H 0.13 2.14 6.20 -52.49 -0.33 1.81 16 36 H 0.10 2.35 6.21 -52.49 -0.33 2.03 16 37 H 0.28 6.35 8.29 -40.82 -0.34 6.01 16 38 H 0.13 3.28 6.16 -52.49 -0.32 2.95 16 39 H 0.12 2.53 8.06 -52.49 -0.42 2.11 16 40 H 0.13 2.38 7.49 -52.49 -0.39 1.99 16 LS Contribution 332.54 15.07 5.01 5.01 Total: -1.00 -27.84 332.54 -10.18 -38.01 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -5.45 Total: 7.92 kcal Atomic # 6 Polarization: -19.26 SS G_CDS: -3.95 Total: -23.22 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: -0.75 Total: -40.61 kcal Atomic # 14 Polarization: 17.91 SS G_CDS: -5.03 Total: 12.88 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -27.84 -10.18 -38.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236415887.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.704 kcal (2) G-P(sol) polarization free energy of solvation -27.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds