Wall clock time and date at job start Tue Mar 31 2020 06:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46901 * 110.99904 * 2 1 4 4 C 1.46897 * 110.99843 * 123.95344 * 2 1 3 5 5 C 1.50700 * 109.47171 * 66.04380 * 4 2 1 6 6 C 1.38359 * 119.93323 * 89.99951 * 5 4 2 7 7 C 1.38317 * 120.25164 * 179.97438 * 6 5 4 8 8 C 1.38028 * 120.12481 * 0.02562 * 7 6 5 9 9 C 1.39366 * 119.87362 * 359.97438 * 8 7 6 10 10 C 1.48306 * 120.12795 * 179.97438 * 9 8 7 11 11 C 1.39906 * 119.60601 * 5.02320 * 10 9 8 12 12 C 1.38692 * 119.46326 * 179.97438 * 11 10 9 13 13 C 1.38283 * 118.68934 * 359.72766 * 12 11 10 14 14 C 1.40682 * 119.18924 * 0.53824 * 13 12 11 15 15 C 1.41377 * 119.77008 * 179.72595 * 14 13 12 16 16 H 1.08006 * 119.99976 * 344.63712 * 15 14 13 17 17 C 1.40018 * 119.99961 * 164.63107 * 15 14 13 18 18 N 1.30744 * 120.00486 * 336.55434 * 17 15 14 19 19 Si 1.86804 * 119.99909 * 156.27925 * 17 15 14 20 20 H 1.48503 * 109.46939 * 270.27907 * 19 17 15 21 21 H 1.48510 * 109.47052 * 30.27509 * 19 17 15 22 22 H 1.48489 * 109.47336 * 150.27788 * 19 17 15 23 23 N 1.32215 * 119.60936 * 184.99906 * 10 9 8 24 24 C 1.37983 * 119.93981 * 270.25493 * 5 4 2 25 25 H 1.08999 * 109.47044 * 296.04817 * 1 2 3 26 26 H 1.08999 * 109.46881 * 56.04742 * 1 2 3 27 27 H 1.08997 * 109.47195 * 176.04569 * 1 2 3 28 28 H 1.09001 * 109.46668 * 183.94859 * 3 2 1 29 29 H 1.09000 * 109.47279 * 303.95199 * 3 2 1 30 30 H 1.09001 * 109.46704 * 63.95816 * 3 2 1 31 31 H 1.09001 * 109.47529 * 306.04746 * 4 2 1 32 32 H 1.08998 * 109.47238 * 186.04377 * 4 2 1 33 33 H 1.07998 * 119.87727 * 359.97438 * 6 5 4 34 34 H 1.07996 * 119.93672 * 179.97438 * 7 6 5 35 35 H 1.07992 * 120.06408 * 179.97438 * 8 7 6 36 36 H 1.07999 * 120.26418 * 0.02562 * 11 10 9 37 37 H 1.07997 * 120.64956 * 180.02562 * 12 11 10 38 38 H 1.08005 * 120.40870 * 180.28357 * 13 12 11 39 39 H 0.96998 * 119.99674 * 353.66084 * 18 17 15 40 40 H 1.07995 * 120.06102 * 359.97438 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.6369 -2.2204 0.9729 6 6 2.4956 -3.0712 0.2998 7 6 2.1733 -4.4074 0.1453 8 6 0.9916 -4.8993 0.6620 9 6 0.1228 -4.0468 1.3409 10 6 -1.1486 -4.5692 1.8978 11 6 -1.4212 -5.9398 1.8306 12 6 -2.6108 -6.4251 2.3528 13 6 -3.4940 -5.5331 2.9329 14 6 -3.1657 -4.1655 2.9653 15 6 -4.0623 -3.2420 3.5501 16 1 -5.0850 -3.5306 3.7435 17 6 -3.6245 -1.9533 3.8787 18 7 -2.3535 -1.7277 4.0866 19 14 -4.8553 -0.5545 4.0126 20 1 -5.0091 0.0981 2.6875 21 1 -6.1676 -1.0905 4.4556 22 1 -4.3680 0.4408 5.0009 23 7 -2.0107 -3.7341 2.4524 24 6 0.4504 -2.6999 1.4890 25 1 -0.3633 0.4513 0.9233 26 1 -0.3633 0.5740 -0.8525 27 1 -0.3633 -1.0252 -0.0709 28 1 3.0828 1.3432 -0.0708 29 1 1.5899 1.9164 -0.8524 30 1 1.7044 1.8723 0.9234 31 1 1.5611 -0.3873 2.0628 32 1 3.0797 -0.6611 1.1756 33 1 3.4210 -2.6907 -0.1065 34 1 2.8471 -5.0669 -0.3813 35 1 0.7408 -5.9426 0.5404 36 1 -0.7106 -6.6144 1.3764 37 1 -2.8406 -7.4795 2.3116 38 1 -4.4263 -5.8814 3.3523 39 1 -1.7263 -2.4674 4.1042 40 1 -0.2208 -2.0340 2.0109 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236417119.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:49 Heat of formation + Delta-G solvation = 47.719294 kcal Electronic energy + Delta-G solvation = -21553.924918 eV Core-core repulsion = 18525.635892 eV Total energy + Delta-G solvation = -3028.289026 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.37567 -38.16035 -36.68383 -33.93985 -32.02495 -31.29868 -30.28426 -28.76278 -27.36134 -26.62276 -25.34059 -23.08578 -22.33545 -21.47235 -20.80845 -19.74871 -17.96258 -16.32074 -15.48159 -15.31647 -15.24205 -14.86591 -14.73408 -14.27057 -13.99433 -13.92617 -13.33576 -12.89931 -12.62865 -12.43819 -12.17943 -12.08941 -11.98541 -11.79649 -11.53100 -11.48044 -11.36054 -11.08118 -10.81276 -10.59483 -10.43551 -10.37346 -9.85843 -9.18259 -8.88929 -8.46232 -8.29973 -8.12159 -8.06364 -7.37649 -7.00970 -4.62070 1.47773 1.84026 2.75687 2.89602 3.15583 3.25231 3.33722 4.01786 4.04394 4.44143 4.72682 5.02547 5.15830 5.21556 5.28581 5.47308 5.51153 5.56462 5.65703 5.72808 5.80461 5.84556 5.86327 5.92498 5.93089 6.10370 6.31098 6.34528 6.38390 6.46375 6.61436 6.71060 6.79963 6.95688 7.07068 7.12751 7.17650 7.21628 7.42218 7.48963 7.56433 7.75115 7.83601 8.01802 8.61529 8.75488 9.73908 10.13058 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.012250 B = 0.006960 C = 0.004633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.111313 B = 4021.813604 C = 6042.733189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.542 5.542 3 C 0.024 3.976 4 C 0.096 3.904 5 C -0.091 4.091 6 C -0.105 4.105 7 C -0.132 4.132 8 C -0.107 4.107 9 C -0.026 4.026 10 C 0.192 3.808 11 C -0.307 4.307 12 C -0.051 4.051 13 C -0.272 4.272 14 C 0.249 3.751 15 C -0.490 4.490 16 H 0.081 0.919 17 C 0.041 3.959 18 N -0.757 5.757 19 Si 1.067 2.933 20 H -0.275 1.275 21 H -0.277 1.277 22 H -0.277 1.277 23 N -0.540 5.540 24 C -0.074 4.074 25 H 0.031 0.969 26 H 0.063 0.937 27 H 0.077 0.923 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.025 0.975 31 H 0.046 0.954 32 H 0.078 0.922 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.122 0.878 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.310 0.690 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.537 2.574 -5.227 9.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.266 5.266 3 C -0.124 4.124 4 C -0.031 4.031 5 C -0.092 4.092 6 C -0.124 4.124 7 C -0.150 4.150 8 C -0.126 4.126 9 C -0.026 4.026 10 C 0.049 3.951 11 C -0.330 4.330 12 C -0.075 4.075 13 C -0.295 4.295 14 C 0.126 3.874 15 C -0.521 4.521 16 H 0.099 0.901 17 C -0.187 4.187 18 N -0.379 5.379 19 Si 0.891 3.109 20 H -0.200 1.200 21 H -0.202 1.202 22 H -0.202 1.202 23 N -0.255 5.255 24 C -0.093 4.093 25 H 0.050 0.950 26 H 0.081 0.919 27 H 0.096 0.904 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.043 0.957 31 H 0.064 0.936 32 H 0.096 0.904 33 H 0.133 0.867 34 H 0.135 0.865 35 H 0.140 0.860 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.126 0.874 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 7.739 4.870 -5.297 10.567 hybrid contribution -0.406 -2.433 0.359 2.492 sum 7.333 2.437 -4.938 9.171 Atomic orbital electron populations 1.22479 0.86637 1.03357 1.00401 1.62050 1.08715 1.13046 1.42758 1.22374 1.00347 0.89179 1.00485 1.21026 0.99704 0.90392 0.92005 1.19613 0.95233 0.94686 0.99647 1.20904 0.99329 0.93311 0.98838 1.20918 0.97135 0.95508 1.01445 1.21241 0.93951 0.99618 0.97828 1.18807 0.93255 0.93213 0.97370 1.19521 0.91973 0.89880 0.93719 1.21110 1.00647 0.95444 1.15834 1.20839 0.93740 0.97618 0.95301 1.21735 1.01834 0.94628 1.11284 1.18497 0.89041 0.90365 0.89525 1.20555 0.98202 0.98010 1.35339 0.90059 1.26917 0.98997 1.00542 0.92216 1.70162 1.03976 1.39559 1.24239 0.83614 0.74538 0.74702 0.78036 1.20048 1.20196 1.20167 1.68170 1.04828 1.36492 1.15988 1.21411 0.95246 0.95297 0.97390 0.94995 0.91859 0.90449 0.91653 0.91519 0.95656 0.93620 0.90394 0.86696 0.86500 0.86006 0.88129 0.88280 0.88136 0.87445 0.84423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.12 60.07 0.55 0.85 16 2 N -0.54 -7.90 5.01 -252.72 -1.27 -9.17 16 3 C 0.02 0.28 9.57 60.07 0.57 0.86 16 4 C 0.10 1.43 5.11 -4.98 -0.03 1.40 16 5 C -0.09 -1.55 4.89 -104.67 -0.51 -2.06 16 6 C -0.10 -1.59 9.69 -39.51 -0.38 -1.98 16 7 C -0.13 -2.00 10.03 -39.63 -0.40 -2.40 16 8 C -0.11 -1.89 9.41 -39.24 -0.37 -2.25 16 9 C -0.03 -0.54 5.87 -104.90 -0.62 -1.15 16 10 C 0.19 4.63 6.73 -82.94 -0.56 4.07 16 11 C -0.31 -6.88 9.47 -38.79 -0.37 -7.24 16 12 C -0.05 -1.14 10.15 -39.40 -0.40 -1.54 16 13 C -0.27 -6.70 9.83 -38.64 -0.38 -7.08 16 14 C 0.25 6.74 6.21 -85.01 -0.53 6.21 16 15 C -0.49 -13.05 9.04 -37.72 -0.34 -13.39 16 16 H 0.08 2.06 7.95 -52.48 -0.42 1.64 16 17 C 0.04 1.05 5.28 -17.35 -0.09 0.96 16 18 N -0.76 -20.21 13.06 55.55 0.73 -19.49 16 19 Si 1.07 21.56 29.99 -169.99 -5.10 16.46 16 20 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 21 H -0.28 -5.26 7.11 56.52 0.40 -4.86 16 22 H -0.28 -5.48 7.11 56.52 0.40 -5.07 16 23 N -0.54 -14.32 6.69 -7.68 -0.05 -14.37 16 24 C -0.07 -1.50 7.47 -39.24 -0.29 -1.79 16 25 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.88 8.12 -51.93 -0.42 0.46 16 27 H 0.08 1.41 6.15 -51.93 -0.32 1.09 16 28 H 0.06 0.66 8.12 -51.93 -0.42 0.23 16 29 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 30 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.05 0.72 8.06 -51.93 -0.42 0.31 16 32 H 0.08 0.99 8.01 -51.93 -0.42 0.57 16 33 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 34 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 35 H 0.12 1.97 6.20 -52.49 -0.33 1.64 16 36 H 0.10 1.96 6.21 -52.49 -0.33 1.64 16 37 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 38 H 0.10 2.30 8.06 -52.48 -0.42 1.88 16 39 H 0.31 8.65 6.55 -40.82 -0.27 8.38 16 40 H 0.14 3.14 7.50 -52.49 -0.39 2.75 16 LS Contribution 333.46 15.07 5.03 5.03 Total: -1.00 -28.48 333.46 -10.28 -38.76 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -5.48 Total: 9.32 kcal Atomic # 6 Polarization: -22.40 SS G_CDS: -4.14 Total: -26.54 kcal Atomic # 7 Polarization: -42.44 SS G_CDS: -0.59 Total: -43.03 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.10 Total: 16.46 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.48 -10.28 -38.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236417119.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.481 kcal (2) G-P(sol) polarization free energy of solvation -28.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds