Wall clock time and date at job start Tue Mar 31 2020 06:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46901 * 110.99904 * 2 1 4 4 C 1.46897 * 110.99843 * 123.95344 * 2 1 3 5 5 C 1.50700 * 109.47171 * 66.04380 * 4 2 1 6 6 C 1.38359 * 119.93323 * 89.99951 * 5 4 2 7 7 C 1.38317 * 120.25164 * 179.97438 * 6 5 4 8 8 C 1.38028 * 120.12481 * 0.02562 * 7 6 5 9 9 C 1.39366 * 119.87362 * 359.97438 * 8 7 6 10 10 C 1.48306 * 120.12795 * 179.97438 * 9 8 7 11 11 C 1.39906 * 119.60601 * 5.02320 * 10 9 8 12 12 C 1.38692 * 119.46326 * 179.97438 * 11 10 9 13 13 C 1.38283 * 118.68934 * 359.72766 * 12 11 10 14 14 C 1.40682 * 119.18924 * 0.53824 * 13 12 11 15 15 C 1.41377 * 119.77008 * 179.72595 * 14 13 12 16 16 H 1.08006 * 119.99976 * 344.63712 * 15 14 13 17 17 C 1.40018 * 119.99961 * 164.63107 * 15 14 13 18 18 N 1.30744 * 120.00486 * 336.55434 * 17 15 14 19 19 Si 1.86804 * 119.99909 * 156.27925 * 17 15 14 20 20 H 1.48503 * 109.46939 * 270.27907 * 19 17 15 21 21 H 1.48510 * 109.47052 * 30.27509 * 19 17 15 22 22 H 1.48489 * 109.47336 * 150.27788 * 19 17 15 23 23 N 1.32215 * 119.60936 * 184.99906 * 10 9 8 24 24 C 1.37983 * 119.93981 * 270.25493 * 5 4 2 25 25 H 1.08999 * 109.47044 * 296.04817 * 1 2 3 26 26 H 1.08999 * 109.46881 * 56.04742 * 1 2 3 27 27 H 1.08997 * 109.47195 * 176.04569 * 1 2 3 28 28 H 1.09001 * 109.46668 * 183.94859 * 3 2 1 29 29 H 1.09000 * 109.47279 * 303.95199 * 3 2 1 30 30 H 1.09001 * 109.46704 * 63.95816 * 3 2 1 31 31 H 1.09001 * 109.47529 * 306.04746 * 4 2 1 32 32 H 1.08998 * 109.47238 * 186.04377 * 4 2 1 33 33 H 1.07998 * 119.87727 * 359.97438 * 6 5 4 34 34 H 1.07996 * 119.93672 * 179.97438 * 7 6 5 35 35 H 1.07992 * 120.06408 * 179.97438 * 8 7 6 36 36 H 1.07999 * 120.26418 * 0.02562 * 11 10 9 37 37 H 1.07997 * 120.64956 * 180.02562 * 12 11 10 38 38 H 1.08005 * 120.40870 * 180.28357 * 13 12 11 39 39 H 0.96998 * 119.99674 * 353.66084 * 18 17 15 40 40 H 1.07995 * 120.06102 * 359.97438 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.6369 -2.2204 0.9729 6 6 2.4956 -3.0712 0.2998 7 6 2.1733 -4.4074 0.1453 8 6 0.9916 -4.8993 0.6620 9 6 0.1228 -4.0468 1.3409 10 6 -1.1486 -4.5692 1.8978 11 6 -1.4212 -5.9398 1.8306 12 6 -2.6108 -6.4251 2.3528 13 6 -3.4940 -5.5331 2.9329 14 6 -3.1657 -4.1655 2.9653 15 6 -4.0623 -3.2420 3.5501 16 1 -5.0850 -3.5306 3.7435 17 6 -3.6245 -1.9533 3.8787 18 7 -2.3535 -1.7277 4.0866 19 14 -4.8553 -0.5545 4.0126 20 1 -5.0091 0.0981 2.6875 21 1 -6.1676 -1.0905 4.4556 22 1 -4.3680 0.4408 5.0009 23 7 -2.0107 -3.7341 2.4524 24 6 0.4504 -2.6999 1.4890 25 1 -0.3633 0.4513 0.9233 26 1 -0.3633 0.5740 -0.8525 27 1 -0.3633 -1.0252 -0.0709 28 1 3.0828 1.3432 -0.0708 29 1 1.5899 1.9164 -0.8524 30 1 1.7044 1.8723 0.9234 31 1 1.5611 -0.3873 2.0628 32 1 3.0797 -0.6611 1.1756 33 1 3.4210 -2.6907 -0.1065 34 1 2.8471 -5.0669 -0.3813 35 1 0.7408 -5.9426 0.5404 36 1 -0.7106 -6.6144 1.3764 37 1 -2.8406 -7.4795 2.3116 38 1 -4.4263 -5.8814 3.3523 39 1 -1.7263 -2.4674 4.1042 40 1 -0.2208 -2.0340 2.0109 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236417119.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:48 Heat of formation + Delta-G solvation = 32.074133 kcal Electronic energy + Delta-G solvation = -21554.603343 eV Core-core repulsion = 18525.635892 eV Total energy + Delta-G solvation = -3028.967451 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.89238 -39.80424 -37.92686 -35.80925 -33.62022 -32.76956 -31.99175 -30.43984 -28.55791 -27.94089 -27.09647 -24.67924 -23.81775 -22.98231 -22.34804 -21.28497 -19.79107 -17.78671 -17.02304 -16.72085 -16.52259 -16.45125 -16.19646 -15.84378 -15.55000 -15.32243 -14.74743 -14.67513 -14.24446 -13.88451 -13.75721 -13.51240 -13.30705 -13.25335 -12.98152 -12.77874 -12.69715 -12.48960 -12.46194 -12.05464 -11.95443 -11.77926 -11.63079 -11.02334 -10.60734 -10.13219 -9.97215 -9.76003 -9.35092 -9.13359 -8.91121 -6.63227 -0.04379 0.48628 0.90824 1.19510 1.47568 1.62571 1.75746 2.31589 2.62780 2.88255 3.23510 3.59100 3.73763 3.79974 3.95399 4.17644 4.26845 4.27171 4.31283 4.43141 4.46610 4.55324 4.63352 4.64298 4.71126 4.73563 4.76573 4.87906 4.97046 4.99055 5.01543 5.19550 5.22370 5.48520 5.54931 5.66054 5.68190 5.70676 5.79571 5.90695 5.92480 6.03402 6.12081 6.17030 6.67377 6.81213 7.84808 8.09413 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.012250 B = 0.006960 C = 0.004633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.111313 B = 4021.813604 C = 6042.733189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.543 5.543 3 C 0.023 3.977 4 C 0.098 3.902 5 C -0.094 4.094 6 C -0.092 4.092 7 C -0.119 4.119 8 C -0.107 4.107 9 C -0.063 4.063 10 C 0.170 3.830 11 C -0.303 4.303 12 C -0.048 4.048 13 C -0.299 4.299 14 C 0.220 3.780 15 C -0.529 4.529 16 H 0.082 0.918 17 C 0.005 3.995 18 N -0.781 5.781 19 Si 1.119 2.881 20 H -0.270 1.270 21 H -0.255 1.255 22 H -0.269 1.269 23 N -0.566 5.566 24 C -0.092 4.092 25 H 0.012 0.988 26 H 0.082 0.918 27 H 0.046 0.954 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.021 0.979 31 H 0.023 0.977 32 H 0.110 0.890 33 H 0.154 0.846 34 H 0.162 0.838 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.141 0.859 38 H 0.109 0.891 39 H 0.291 0.709 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.882 2.107 -7.176 12.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.267 5.267 3 C -0.125 4.125 4 C -0.029 4.029 5 C -0.095 4.095 6 C -0.111 4.111 7 C -0.137 4.137 8 C -0.126 4.126 9 C -0.064 4.064 10 C 0.028 3.972 11 C -0.326 4.326 12 C -0.071 4.071 13 C -0.321 4.321 14 C 0.096 3.904 15 C -0.560 4.560 16 H 0.101 0.899 17 C -0.217 4.217 18 N -0.403 5.403 19 Si 0.936 3.064 20 H -0.195 1.195 21 H -0.179 1.179 22 H -0.194 1.194 23 N -0.282 5.282 24 C -0.112 4.112 25 H 0.031 0.969 26 H 0.100 0.900 27 H 0.065 0.935 28 H 0.107 0.893 29 H 0.097 0.903 30 H 0.040 0.960 31 H 0.042 0.958 32 H 0.128 0.872 33 H 0.171 0.829 34 H 0.179 0.821 35 H 0.156 0.844 36 H 0.154 0.846 37 H 0.158 0.842 38 H 0.127 0.873 39 H 0.105 0.895 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 10.099 4.376 -7.252 13.181 hybrid contribution -0.956 -2.414 0.848 2.731 sum 9.142 1.962 -6.405 11.334 Atomic orbital electron populations 1.22341 0.88109 1.01476 1.00211 1.62091 1.07391 1.14942 1.42227 1.22492 1.01727 0.87347 1.00888 1.21065 1.01307 0.89289 0.91284 1.19832 0.94233 0.96165 0.99247 1.21357 0.99770 0.93102 0.96860 1.21396 0.96320 0.96049 0.99892 1.21449 0.94198 0.99867 0.97111 1.18910 0.93284 0.94203 0.99992 1.20250 0.92887 0.90881 0.93163 1.21581 1.01131 0.95314 1.14530 1.21297 0.92918 0.99318 0.93594 1.21936 1.03098 0.94307 1.12753 1.18963 0.89683 0.91785 0.90018 1.20799 0.98491 0.99336 1.37410 0.89940 1.28404 0.99846 1.02906 0.90564 1.70273 1.04579 1.38517 1.26897 0.83000 0.73124 0.71910 0.78342 1.19549 1.17896 1.19383 1.68190 1.05276 1.37905 1.16804 1.21163 0.96383 0.94847 0.98803 0.96939 0.89964 0.93498 0.89293 0.90251 0.96013 0.95829 0.87156 0.82871 0.82076 0.84430 0.84642 0.84171 0.87311 0.89522 0.88667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.89 9.12 127.69 1.17 2.05 16 2 N -0.54 -15.20 5.01 -953.46 -4.78 -19.98 16 3 C 0.02 0.48 9.57 127.69 1.22 1.70 16 4 C 0.10 2.83 5.11 85.56 0.44 3.27 16 5 C -0.09 -3.13 4.89 -19.90 -0.10 -3.23 16 6 C -0.09 -2.46 9.69 22.32 0.22 -2.24 16 7 C -0.12 -3.10 10.03 22.24 0.22 -2.87 16 8 C -0.11 -3.54 9.41 22.49 0.21 -3.33 16 9 C -0.06 -2.70 5.87 -20.04 -0.12 -2.82 16 10 C 0.17 8.49 6.73 42.17 0.28 8.77 16 11 C -0.30 -13.39 9.47 22.78 0.22 -13.17 16 12 C -0.05 -2.09 10.15 22.39 0.23 -1.86 16 13 C -0.30 -15.15 9.83 22.88 0.22 -14.92 16 14 C 0.22 12.57 6.21 40.25 0.25 12.83 16 15 C -0.53 -29.89 9.04 23.47 0.21 -29.68 16 16 H 0.08 4.42 7.95 -2.91 -0.02 4.40 16 17 C 0.00 0.24 5.28 85.29 0.45 0.69 16 18 N -0.78 -44.74 13.06 21.84 0.29 -44.45 16 19 Si 1.12 45.09 29.99 68.60 2.06 47.15 16 20 H -0.27 -10.58 7.11 99.48 0.71 -9.88 16 21 H -0.26 -9.28 7.11 99.48 0.71 -8.57 16 22 H -0.27 -10.41 7.11 99.48 0.71 -9.70 16 23 N -0.57 -32.01 6.69 -178.20 -1.19 -33.20 16 24 C -0.09 -3.92 7.47 22.49 0.17 -3.75 16 25 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 26 H 0.08 2.30 8.12 -2.39 -0.02 2.28 16 27 H 0.05 1.81 6.15 -2.39 -0.01 1.80 16 28 H 0.09 1.46 8.12 -2.39 -0.02 1.45 16 29 H 0.08 1.47 8.12 -2.39 -0.02 1.45 16 30 H 0.02 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.02 0.78 8.06 -2.39 -0.02 0.76 16 32 H 0.11 2.46 8.01 -2.39 -0.02 2.44 16 33 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 34 H 0.16 2.84 8.06 -2.91 -0.02 2.82 16 35 H 0.14 3.99 6.20 -2.91 -0.02 3.98 16 36 H 0.14 4.92 6.21 -2.91 -0.02 4.90 16 37 H 0.14 4.92 8.06 -2.91 -0.02 4.89 16 38 H 0.11 5.14 8.06 -2.91 -0.02 5.12 16 39 H 0.29 17.69 6.55 -92.71 -0.61 17.08 16 40 H 0.10 4.81 7.50 -2.91 -0.02 4.79 16 Total: -1.00 -68.08 333.46 2.86 -65.22 By element: Atomic # 1 Polarization: 32.63 SS G_CDS: 1.19 Total: 33.82 kcal Atomic # 6 Polarization: -53.86 SS G_CDS: 5.29 Total: -48.57 kcal Atomic # 7 Polarization: -91.94 SS G_CDS: -5.68 Total: -97.63 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.06 Total: 47.15 kcal Total: -68.08 2.86 -65.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236417119.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.294 kcal (2) G-P(sol) polarization free energy of solvation -68.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds