Wall clock time and date at job start Tue Mar 31 2020 06:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46896 * 110.99542 * 2 1 4 4 C 1.46897 * 110.99890 * 123.95140 * 2 1 3 5 5 C 1.50699 * 109.46856 * 170.00066 * 4 2 1 6 6 C 1.38423 * 119.92753 * 269.98026 * 5 4 2 7 7 C 1.38377 * 120.29494 * 179.97438 * 6 5 4 8 8 C 1.37951 * 120.14511 * 0.04240 * 7 6 5 9 9 C 1.39605 * 119.85351 * 359.97438 * 8 7 6 10 10 C 1.47966 * 120.14616 * 180.27749 * 9 8 7 11 11 C 1.40263 * 120.34396 * 359.71690 * 10 9 8 12 12 C 1.36686 * 118.60372 * 179.97438 * 11 10 9 13 13 C 1.40876 * 119.25528 * 0.02562 * 12 11 10 14 14 C 1.40991 * 119.68397 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00083 * 0.02562 * 14 13 12 16 16 C 1.40101 * 119.99908 * 179.97438 * 14 13 12 17 17 N 1.30708 * 120.00452 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 119.99920 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.46896 * 59.99989 * 18 16 14 20 20 H 1.48499 * 109.47198 * 180.02562 * 18 16 14 21 21 H 1.48509 * 109.47015 * 300.00218 * 18 16 14 22 22 N 1.33787 * 120.63694 * 0.02562 * 13 12 11 23 23 C 1.31197 * 121.50088 * 359.72277 * 22 13 12 24 24 C 1.37905 * 119.92758 * 90.00173 * 5 4 2 25 25 H 1.08997 * 109.46952 * 296.04399 * 1 2 3 26 26 H 1.09002 * 109.47403 * 56.04877 * 1 2 3 27 27 H 1.08999 * 109.46655 * 176.04741 * 1 2 3 28 28 H 1.09008 * 109.46859 * 183.95075 * 3 2 1 29 29 H 1.08996 * 109.47313 * 303.94812 * 3 2 1 30 30 H 1.08997 * 109.47323 * 63.95467 * 3 2 1 31 31 H 1.09003 * 109.47308 * 50.00662 * 4 2 1 32 32 H 1.08995 * 109.47408 * 290.00056 * 4 2 1 33 33 H 1.08003 * 119.85344 * 0.02562 * 6 5 4 34 34 H 1.08001 * 119.92424 * 180.02562 * 7 6 5 35 35 H 1.08004 * 120.07443 * 180.02562 * 8 7 6 36 36 H 1.07998 * 120.69819 * 359.96402 * 11 10 9 37 37 H 1.07996 * 120.37668 * 179.97438 * 12 11 10 38 38 H 0.96998 * 120.00521 * 180.02562 * 17 16 14 39 39 H 1.08001 * 119.65357 * 180.26609 * 23 22 13 40 40 H 1.08001 * 120.07778 * 359.97438 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 3.4818 -0.9524 0.9729 6 6 3.9684 -2.0598 0.2998 7 6 5.3317 -2.2383 0.1437 8 6 6.2152 -1.3128 0.6594 9 6 5.7311 -0.1939 1.3395 10 6 6.6726 0.8061 1.8900 11 6 8.0565 0.6351 1.7382 12 6 8.8939 1.5809 2.2602 13 6 8.3451 2.6915 2.9310 14 6 9.2004 3.6728 3.4725 15 1 10.2709 3.5712 3.3716 16 6 8.6617 4.7802 4.1405 17 7 7.3662 4.9035 4.2622 18 14 9.7950 6.0808 4.8572 19 1 10.6112 6.6794 3.7706 20 1 8.9834 7.1403 5.5083 21 1 10.6915 5.4563 5.8631 22 7 7.0199 2.8240 3.0593 23 6 6.1911 1.9354 2.5647 24 6 4.3541 -0.0197 1.4933 25 1 -0.3633 0.4512 0.9233 26 1 -0.3634 0.5739 -0.8525 27 1 -0.3632 -1.0252 -0.0708 28 1 3.0828 1.3433 -0.0708 29 1 1.5898 1.9163 -0.8524 30 1 1.7043 1.8723 0.9233 31 1 1.5090 -1.7407 1.1756 32 1 1.7975 -0.2247 2.0628 33 1 3.2810 -2.7873 -0.1060 34 1 5.7049 -3.1043 -0.3829 35 1 7.2790 -1.4530 0.5364 36 1 8.4521 -0.2259 1.2200 37 1 9.9642 1.4776 2.1603 38 1 6.9932 5.6704 4.7243 39 1 5.1265 2.0743 2.6819 40 1 3.9732 0.8439 2.0182 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236418464.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:28 Heat of formation + Delta-G solvation = 57.082879 kcal Electronic energy + Delta-G solvation = -20890.671647 eV Core-core repulsion = 17862.788657 eV Total energy + Delta-G solvation = -3027.882991 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.30016 -38.07393 -36.73835 -33.94519 -32.03863 -31.19364 -30.57078 -28.85921 -27.51578 -26.54322 -25.58816 -22.75796 -22.54662 -21.63434 -20.61976 -19.61338 -17.67076 -16.40795 -15.69306 -15.40977 -15.34122 -15.23478 -14.53589 -14.38000 -14.17221 -13.61539 -13.10865 -12.76889 -12.65623 -12.62352 -12.35102 -12.14708 -11.91538 -11.81038 -11.59972 -11.48247 -11.33933 -11.25403 -11.09109 -10.76227 -10.48521 -10.27357 -10.01611 -9.64318 -8.81093 -8.50123 -8.27850 -8.18033 -7.69344 -7.19178 -6.59164 -4.64241 1.63470 1.86593 2.76323 2.98215 3.00039 3.01125 3.15945 3.79641 4.00625 4.42718 4.74042 4.97347 5.11601 5.21206 5.34916 5.43281 5.52371 5.54507 5.64785 5.70912 5.73835 5.75375 5.81235 5.90114 6.00841 6.08146 6.12308 6.16684 6.44819 6.59272 6.66929 6.71422 6.90565 6.94272 6.97873 7.04502 7.05630 7.13655 7.26794 7.45123 7.62038 7.75094 7.89069 8.04710 8.45071 8.74484 9.94594 10.10719 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.022295 B = 0.003865 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.586243 B = 7242.320860 C = 8322.168774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.542 5.542 3 C 0.019 3.981 4 C 0.096 3.904 5 C -0.071 4.071 6 C -0.141 4.141 7 C -0.111 4.111 8 C -0.148 4.148 9 C 0.033 3.967 10 C -0.277 4.277 11 C -0.035 4.035 12 C -0.272 4.272 13 C 0.252 3.748 14 C -0.409 4.409 15 H 0.087 0.913 16 C 0.064 3.936 17 N -0.700 5.700 18 Si 0.912 3.088 19 H -0.262 1.262 20 H -0.275 1.275 21 H -0.263 1.263 22 N -0.488 5.488 23 C 0.156 3.844 24 C -0.139 4.139 25 H 0.023 0.977 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.026 0.974 31 H 0.078 0.922 32 H 0.041 0.959 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.115 0.885 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.277 0.723 39 H 0.120 0.880 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.197 -6.696 -4.566 11.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.265 5.265 3 C -0.129 4.129 4 C -0.031 4.031 5 C -0.071 4.071 6 C -0.160 4.160 7 C -0.129 4.129 8 C -0.166 4.166 9 C 0.032 3.968 10 C -0.282 4.282 11 C -0.058 4.058 12 C -0.295 4.295 13 C 0.129 3.871 14 C -0.438 4.438 15 H 0.105 0.895 16 C -0.164 4.164 17 N -0.320 5.320 18 Si 0.735 3.265 19 H -0.187 1.187 20 H -0.200 1.200 21 H -0.187 1.187 22 N -0.200 5.200 23 C -0.013 4.013 24 C -0.157 4.157 25 H 0.042 0.958 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.098 0.902 29 H 0.083 0.917 30 H 0.044 0.956 31 H 0.096 0.904 32 H 0.059 0.941 33 H 0.128 0.872 34 H 0.129 0.871 35 H 0.133 0.867 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.089 0.911 39 H 0.138 0.862 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -8.472 -5.986 -4.430 11.280 hybrid contribution 0.533 0.182 0.549 0.787 sum -7.939 -5.805 -3.881 10.573 Atomic orbital electron populations 1.22383 0.87681 1.01948 1.00382 1.62006 1.07168 1.14402 1.42971 1.22494 1.02239 0.88088 1.00114 1.21042 0.92304 0.98273 0.91495 1.19438 0.93777 0.95241 0.98671 1.20704 0.94956 0.98401 1.01951 1.20900 0.93363 0.98740 0.99897 1.21150 0.99256 0.95216 1.00994 1.18821 0.92300 0.92717 0.93000 1.19048 0.92614 1.00687 1.15900 1.20658 0.92655 0.96682 0.95846 1.21433 0.98560 0.99389 1.10083 1.18663 0.89410 0.90385 0.88649 1.19761 0.94476 1.02499 1.27083 0.89451 1.26191 0.95526 0.99181 0.95483 1.70105 1.11952 1.24984 1.24949 0.86305 0.80576 0.79676 0.79905 1.18692 1.19974 1.18704 1.68805 1.02858 1.26967 1.21364 1.22740 0.98557 0.88999 0.90978 1.21016 0.92591 0.99351 1.02784 0.95800 0.91470 0.91565 0.90197 0.91726 0.95569 0.90399 0.94117 0.87234 0.87093 0.86726 0.88307 0.88145 0.91114 0.86218 0.86693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.57 60.07 0.57 0.82 16 2 N -0.54 -6.97 5.01 -252.73 -1.27 -8.23 16 3 C 0.02 0.25 9.13 60.06 0.55 0.79 16 4 C 0.10 1.26 5.11 -4.98 -0.03 1.23 16 5 C -0.07 -1.10 4.88 -104.68 -0.51 -1.61 16 6 C -0.14 -2.11 9.70 -39.46 -0.38 -2.49 16 7 C -0.11 -1.69 10.03 -39.64 -0.40 -2.09 16 8 C -0.15 -2.58 9.44 -39.18 -0.37 -2.95 16 9 C 0.03 0.63 5.88 -104.88 -0.62 0.02 16 10 C -0.28 -6.18 5.92 -104.46 -0.62 -6.80 16 11 C -0.04 -0.78 9.46 -39.38 -0.37 -1.16 16 12 C -0.27 -6.52 9.76 -39.15 -0.38 -6.91 16 13 C 0.25 6.70 6.55 -84.97 -0.56 6.15 16 14 C -0.41 -10.51 9.12 -37.84 -0.35 -10.85 16 15 H 0.09 2.07 7.85 -52.49 -0.41 1.66 16 16 C 0.06 1.55 5.50 -17.33 -0.10 1.45 16 17 N -0.70 -17.92 11.44 55.55 0.64 -17.28 16 18 Si 0.91 17.68 29.56 -169.99 -5.02 12.66 16 19 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 20 H -0.28 -5.20 7.11 56.52 0.40 -4.80 16 21 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 22 N -0.49 -13.16 7.83 -10.84 -0.08 -13.25 16 23 C 0.16 3.75 10.60 -17.13 -0.18 3.57 16 24 C -0.14 -2.44 7.35 -39.18 -0.29 -2.73 16 25 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 26 H 0.07 0.61 8.12 -51.93 -0.42 0.19 16 27 H 0.07 0.59 8.12 -51.93 -0.42 0.16 16 28 H 0.08 1.21 6.16 -51.92 -0.32 0.89 16 29 H 0.06 0.76 8.12 -51.93 -0.42 0.33 16 30 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 0.90 8.01 -51.93 -0.42 0.48 16 32 H 0.04 0.53 8.06 -51.93 -0.42 0.11 16 33 H 0.11 1.41 8.06 -52.48 -0.42 0.99 16 34 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 35 H 0.11 1.89 6.25 -52.48 -0.33 1.56 16 36 H 0.10 1.90 6.30 -52.49 -0.33 1.57 16 37 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 38 H 0.28 6.40 8.29 -40.82 -0.34 6.06 16 39 H 0.12 2.60 6.21 -52.49 -0.33 2.27 16 40 H 0.12 1.99 6.19 -52.49 -0.32 1.67 16 LS Contribution 331.32 15.07 4.99 4.99 Total: -1.00 -28.14 331.32 -10.16 -38.29 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -5.39 Total: 6.37 kcal Atomic # 6 Polarization: -19.53 SS G_CDS: -4.02 Total: -23.55 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: -0.72 Total: -38.77 kcal Atomic # 14 Polarization: 17.68 SS G_CDS: -5.02 Total: 12.66 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.14 -10.16 -38.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236418464.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.374 kcal (2) G-P(sol) polarization free energy of solvation -28.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds