Wall clock time and date at job start Tue Mar 31 2020 06:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46906 * 110.99936 * 2 1 4 4 C 1.46902 * 110.99997 * 123.94929 * 2 1 3 5 5 C 1.50700 * 109.46897 * 169.99670 * 4 2 1 6 6 C 1.38333 * 119.94356 * 269.98160 * 5 4 2 7 7 C 1.38304 * 120.24221 * 180.02562 * 6 5 4 8 8 C 1.38043 * 120.11902 * 359.72220 * 7 6 5 9 9 C 1.39311 * 119.87798 * 0.55355 * 8 7 6 10 10 C 1.48408 * 120.11973 * 179.71869 * 9 8 7 11 11 C 1.39706 * 120.40955 * 179.74699 * 10 9 8 12 12 N 1.31920 * 121.15252 * 179.97438 * 11 10 9 13 13 C 1.31515 * 122.11693 * 359.97438 * 12 11 10 14 14 C 1.40779 * 120.66862 * 359.74723 * 13 12 11 15 15 C 1.41437 * 120.60387 * 180.28802 * 14 13 12 16 16 H 1.07996 * 120.00514 * 23.69732 * 15 14 13 17 17 C 1.39939 * 119.99497 * 203.70498 * 15 14 13 18 18 N 1.30827 * 120.00100 * 17.55252 * 17 15 14 19 19 Si 1.86799 * 119.99737 * 197.55358 * 17 15 14 20 20 H 1.48493 * 109.47563 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47081 * 120.00220 * 19 17 15 22 22 H 1.48500 * 109.47232 * 239.99518 * 19 17 15 23 23 C 1.39138 * 120.41288 * 359.72950 * 10 9 8 24 24 C 1.38005 * 119.93729 * 90.00595 * 5 4 2 25 25 H 1.09003 * 109.46992 * 296.04852 * 1 2 3 26 26 H 1.09004 * 109.46985 * 56.04670 * 1 2 3 27 27 H 1.09001 * 109.47164 * 176.04325 * 1 2 3 28 28 H 1.08993 * 109.47132 * 183.95671 * 3 2 1 29 29 H 1.09000 * 109.46914 * 303.95613 * 3 2 1 30 30 H 1.08998 * 109.46966 * 63.95507 * 3 2 1 31 31 H 1.09002 * 109.46712 * 50.00202 * 4 2 1 32 32 H 1.08991 * 109.47326 * 290.00064 * 4 2 1 33 33 H 1.07996 * 119.88119 * 0.04673 * 6 5 4 34 34 H 1.08004 * 119.93840 * 180.02562 * 7 6 5 35 35 H 1.07999 * 120.06355 * 180.29721 * 8 7 6 36 36 H 1.08004 * 119.42487 * 0.02562 * 11 10 9 37 37 H 1.08003 * 119.67032 * 180.02562 * 13 12 11 38 38 H 0.96998 * 119.99988 * 179.97438 * 18 17 15 39 39 H 1.08001 * 120.95158 * 359.97438 * 23 10 9 40 40 H 1.08001 * 120.05653 * 359.95276 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 3.4817 -0.9525 0.9728 6 6 3.9684 -2.0590 0.3003 7 6 5.3312 -2.2367 0.1459 8 6 6.2134 -1.3065 0.6579 9 6 5.7290 -0.1932 1.3411 10 6 6.6729 0.8070 1.8990 11 6 6.1935 1.9283 2.5806 12 7 7.0193 2.8262 3.0829 13 6 8.3250 2.7154 2.9709 14 6 8.8978 1.6150 2.3053 15 6 10.3023 1.4941 2.1910 16 1 10.9468 1.9916 2.9005 17 6 10.8569 0.7299 1.1582 18 7 10.1321 0.4152 0.1155 19 14 12.6321 0.1590 1.2685 20 1 13.2302 0.6440 2.5381 21 1 12.6779 -1.3249 1.2342 22 1 13.3997 0.7044 0.1202 23 6 8.0461 0.6393 1.7502 24 6 4.3549 -0.0193 1.4936 25 1 -0.3633 0.4513 0.9233 26 1 -0.3633 0.5740 -0.8525 27 1 -0.3633 -1.0252 -0.0709 28 1 3.0827 1.3433 -0.0709 29 1 1.5897 1.9164 -0.8524 30 1 1.7044 1.8724 0.9233 31 1 1.5089 -1.7406 1.1757 32 1 1.7975 -0.2247 2.0628 33 1 3.2816 -2.7868 -0.1060 34 1 5.7058 -3.1022 -0.3804 35 1 7.2773 -1.4436 0.5326 36 1 5.1284 2.0621 2.6991 37 1 8.9645 3.4738 3.3978 38 1 10.5167 -0.1142 -0.6006 39 1 8.4478 -0.2172 1.2291 40 1 3.9739 0.8445 2.0182 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236423531.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:34 Heat of formation + Delta-G solvation = 47.943545 kcal Electronic energy + Delta-G solvation = -21098.477490 eV Core-core repulsion = 18070.198188 eV Total energy + Delta-G solvation = -3028.279302 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.44638 -38.14970 -36.81496 -34.15702 -32.51609 -31.25041 -30.39638 -28.45533 -27.53096 -26.66325 -25.61160 -22.99349 -22.58019 -21.76634 -20.71360 -19.57383 -17.40727 -16.44860 -15.58636 -15.47145 -15.43308 -15.38092 -14.87170 -14.62404 -14.15590 -13.71202 -13.21013 -12.90039 -12.75351 -12.52721 -12.39135 -12.17624 -11.97346 -11.71386 -11.68365 -11.58382 -11.52109 -11.26656 -11.17743 -10.75256 -10.66888 -10.40307 -9.85389 -9.44444 -9.16387 -8.56516 -8.25889 -8.16600 -7.91277 -7.23416 -6.89912 -4.55714 1.48813 1.76929 2.65184 2.97197 2.99802 3.04458 3.13633 3.80675 3.93719 4.36238 4.61753 4.89241 5.03875 5.14091 5.28684 5.34051 5.42952 5.47444 5.55964 5.61830 5.62761 5.66431 5.70863 5.89770 5.95869 6.03674 6.05885 6.31128 6.34670 6.55772 6.67348 6.76640 6.83712 6.91368 6.97139 6.99016 7.01989 7.13264 7.22304 7.44920 7.64335 7.78684 7.87162 8.35200 8.60468 8.63713 9.55870 9.99216 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.024209 B = 0.004163 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.326208 B = 6724.317715 C = 7537.583820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.542 5.542 3 C 0.019 3.981 4 C 0.097 3.903 5 C -0.085 4.085 6 C -0.115 4.115 7 C -0.121 4.121 8 C -0.111 4.111 9 C -0.009 4.009 10 C -0.093 4.093 11 C -0.025 4.025 12 N -0.470 5.470 13 C -0.018 4.018 14 C 0.061 3.939 15 C -0.449 4.449 16 H 0.084 0.916 17 C 0.075 3.925 18 N -0.789 5.789 19 Si 0.911 3.089 20 H -0.258 1.258 21 H -0.270 1.270 22 H -0.273 1.273 23 C -0.116 4.116 24 C -0.112 4.112 25 H 0.023 0.977 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.065 0.935 30 H 0.025 0.975 31 H 0.079 0.921 32 H 0.041 0.959 33 H 0.114 0.886 34 H 0.117 0.883 35 H 0.127 0.873 36 H 0.120 0.880 37 H 0.127 0.873 38 H 0.284 0.716 39 H 0.134 0.866 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.315 -5.249 -1.702 12.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.266 5.266 3 C -0.129 4.129 4 C -0.030 4.030 5 C -0.085 4.085 6 C -0.134 4.134 7 C -0.139 4.139 8 C -0.129 4.129 9 C -0.010 4.010 10 C -0.095 4.095 11 C -0.183 4.183 12 N -0.177 5.177 13 C -0.179 4.179 14 C 0.057 3.943 15 C -0.479 4.479 16 H 0.103 0.897 17 C -0.144 4.144 18 N -0.414 5.414 19 Si 0.735 3.265 20 H -0.182 1.182 21 H -0.195 1.195 22 H -0.198 1.198 23 C -0.142 4.142 24 C -0.131 4.131 25 H 0.042 0.958 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.044 0.956 31 H 0.098 0.902 32 H 0.059 0.941 33 H 0.132 0.868 34 H 0.135 0.865 35 H 0.145 0.855 36 H 0.137 0.863 37 H 0.144 0.856 38 H 0.095 0.905 39 H 0.151 0.849 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -11.511 -4.868 -1.930 12.646 hybrid contribution 0.921 -0.587 0.101 1.097 sum -10.589 -5.456 -1.829 12.052 Atomic orbital electron populations 1.22384 0.87573 1.02021 1.00396 1.62003 1.07251 1.14393 1.42941 1.22496 1.02202 0.88120 1.00127 1.21027 0.92045 0.98411 0.91516 1.19474 0.93998 0.95520 0.99551 1.20832 0.95100 0.97758 0.99720 1.21008 0.93243 0.99195 1.00451 1.21388 1.00329 0.93761 0.97445 1.18931 0.92465 0.93878 0.95734 1.19459 0.93605 0.95707 1.00766 1.21745 0.97377 0.94088 1.05061 1.66934 1.05322 1.28346 1.17100 1.22545 0.90032 0.98196 1.07090 1.18481 0.94433 0.90557 0.90851 1.19598 0.91555 1.26175 1.10535 0.89747 1.25976 1.00731 0.93826 0.93890 1.69794 1.38454 1.27945 1.05165 0.86197 0.81440 0.79203 0.79620 1.18200 1.19539 1.19807 1.21852 0.90438 0.99877 1.02016 1.21073 0.92488 0.98755 1.00767 0.95798 0.91422 0.91506 0.90260 0.91627 0.95610 0.90249 0.94073 0.86788 0.86525 0.85470 0.86277 0.85583 0.90526 0.84894 0.86342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.57 60.06 0.57 0.81 16 2 N -0.54 -6.68 5.01 -252.72 -1.27 -7.94 16 3 C 0.02 0.23 9.14 60.07 0.55 0.78 16 4 C 0.10 1.20 5.12 -4.97 -0.03 1.18 16 5 C -0.08 -1.28 4.88 -104.67 -0.51 -1.79 16 6 C -0.12 -1.69 9.69 -39.52 -0.38 -2.07 16 7 C -0.12 -1.89 10.03 -39.63 -0.40 -2.29 16 8 C -0.11 -2.07 9.44 -39.25 -0.37 -2.44 16 9 C -0.01 -0.18 5.88 -104.90 -0.62 -0.80 16 10 C -0.09 -2.16 5.88 -104.83 -0.62 -2.77 16 11 C -0.02 -0.58 10.60 -16.97 -0.18 -0.75 16 12 N -0.47 -11.64 10.32 -12.28 -0.13 -11.76 16 13 C -0.02 -0.44 10.96 -16.73 -0.18 -0.63 16 14 C 0.06 1.59 5.59 -106.71 -0.60 0.99 16 15 C -0.45 -11.35 9.08 -37.73 -0.34 -11.69 16 16 H 0.08 2.03 7.90 -52.49 -0.41 1.62 16 17 C 0.07 1.77 5.18 -17.34 -0.09 1.68 16 18 N -0.79 -19.29 10.91 55.55 0.61 -18.68 16 19 Si 0.91 17.73 29.59 -169.99 -5.03 12.70 16 20 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 21 H -0.27 -5.18 7.11 56.52 0.40 -4.77 16 22 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 23 C -0.12 -2.93 8.17 -38.24 -0.31 -3.24 16 24 C -0.11 -1.93 7.35 -39.26 -0.29 -2.22 16 25 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 26 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 27 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 28 H 0.08 1.16 6.16 -51.93 -0.32 0.84 16 29 H 0.06 0.73 8.12 -51.93 -0.42 0.31 16 30 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.08 0.86 8.01 -51.93 -0.42 0.44 16 32 H 0.04 0.50 8.06 -51.93 -0.42 0.08 16 33 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 34 H 0.12 1.54 8.06 -52.48 -0.42 1.11 16 35 H 0.13 2.47 6.26 -52.49 -0.33 2.14 16 36 H 0.12 2.44 6.20 -52.48 -0.33 2.11 16 37 H 0.13 2.92 8.06 -52.48 -0.42 2.50 16 38 H 0.28 6.27 8.30 -40.82 -0.34 5.94 16 39 H 0.13 3.34 4.44 -52.49 -0.23 3.11 16 40 H 0.12 1.95 6.19 -52.49 -0.32 1.62 16 LS Contribution 330.05 15.07 4.97 4.97 Total: -1.00 -27.49 330.05 -9.93 -37.41 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -5.29 Total: 8.56 kcal Atomic # 6 Polarization: -21.47 SS G_CDS: -3.79 Total: -25.26 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: -0.79 Total: -38.39 kcal Atomic # 14 Polarization: 17.73 SS G_CDS: -5.03 Total: 12.70 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -27.49 -9.93 -37.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236423531.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.357 kcal (2) G-P(sol) polarization free energy of solvation -27.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds