Wall clock time and date at job start Tue Mar 31 2020 06:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46893 * 111.00145 * 2 1 4 4 C 1.46893 * 111.00110 * 123.95945 * 2 1 3 5 5 C 1.50703 * 109.47375 * 169.99803 * 4 2 1 6 6 C 1.38432 * 119.92302 * 89.99536 * 5 4 2 7 7 C 1.38378 * 120.30341 * 179.97438 * 6 5 4 8 8 C 1.37933 * 120.15775 * 359.97438 * 7 6 5 9 9 C 1.39668 * 119.84294 * 359.97438 * 8 7 6 10 10 C 1.47818 * 120.15127 * 179.97438 * 9 8 7 11 11 C 1.39684 * 120.64682 * 129.98027 * 10 9 8 12 12 C 1.38394 * 118.47319 * 180.02562 * 11 10 9 13 13 C 1.39054 * 119.72705 * 359.97438 * 12 11 10 14 14 N 1.31284 * 121.33873 * 0.02562 * 13 12 11 15 15 C 1.33693 * 121.63692 * 359.97438 * 14 13 12 16 16 C 1.40820 * 119.94020 * 179.97438 * 15 14 13 17 17 H 1.07994 * 120.00253 * 179.97438 * 16 15 14 18 18 C 1.40151 * 119.99826 * 0.02562 * 16 15 14 19 19 N 1.30699 * 120.00231 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00195 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47222 * 59.99703 * 20 18 16 22 22 H 1.48502 * 109.47349 * 179.97438 * 20 18 16 23 23 H 1.48507 * 109.47118 * 299.99709 * 20 18 16 24 24 C 1.37895 * 119.92409 * 270.23663 * 5 4 2 25 25 H 1.09003 * 109.46803 * 296.04114 * 1 2 3 26 26 H 1.08999 * 109.47539 * 56.04130 * 1 2 3 27 27 H 1.09000 * 109.47307 * 176.04797 * 1 2 3 28 28 H 1.09000 * 109.47648 * 183.95756 * 3 2 1 29 29 H 1.09003 * 109.47518 * 303.96056 * 3 2 1 30 30 H 1.09009 * 109.47290 * 63.95586 * 3 2 1 31 31 H 1.08998 * 109.47563 * 49.99650 * 4 2 1 32 32 H 1.09008 * 109.47012 * 289.99490 * 4 2 1 33 33 H 1.07995 * 119.84491 * 359.96172 * 6 5 4 34 34 H 1.08007 * 119.91834 * 179.97438 * 7 6 5 35 35 H 1.08004 * 120.07957 * 179.97438 * 8 7 6 36 36 H 1.07995 * 120.76123 * 0.04570 * 11 10 9 37 37 H 1.07996 * 120.13652 * 180.02562 * 12 11 10 38 38 H 1.08007 * 119.33144 * 180.28253 * 13 12 11 39 39 H 0.96997 * 120.00579 * 180.02562 * 19 18 16 40 40 H 1.08003 * 120.07594 * 0.03184 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.9955 -0.7660 1.1374 5 6 3.4818 -0.9526 0.9727 6 6 4.3574 -0.0163 1.4952 7 6 5.7237 -0.1801 1.3490 8 6 6.2223 -1.2791 0.6812 9 6 5.3447 -2.2283 0.1524 10 6 5.8716 -3.4084 -0.5650 11 6 5.4338 -4.6941 -0.2388 12 6 5.9574 -5.7669 -0.9390 13 6 6.8962 -5.5446 -1.9404 14 7 7.3013 -4.3322 -2.2396 15 6 6.8315 -3.2575 -1.5980 16 6 7.2914 -1.9733 -1.9478 17 1 6.9122 -1.1045 -1.4305 18 6 8.2404 -1.8227 -2.9681 19 7 8.6989 -2.8741 -3.5945 20 14 8.8500 -0.1192 -3.4326 21 1 9.4881 0.5172 -2.2523 22 1 9.8429 -0.2313 -4.5312 23 1 7.7040 0.7108 -3.8834 24 6 3.9663 -2.0530 0.2975 25 1 -0.3633 0.4512 0.9234 26 1 -0.3634 0.5740 -0.8524 27 1 -0.3634 -1.0252 -0.0708 28 1 3.0828 1.3432 -0.0709 29 1 1.5898 1.9164 -0.8524 30 1 1.7045 1.8723 0.9234 31 1 1.5090 -1.7407 1.1755 32 1 1.7976 -0.2248 2.0628 33 1 3.9724 0.8460 2.0192 34 1 6.4012 0.5545 1.7588 35 1 7.2889 -1.4055 0.5674 36 1 4.7033 -4.8474 0.5417 37 1 5.6376 -6.7725 -0.7091 38 1 7.2972 -6.3861 -2.4859 39 1 9.3560 -2.7700 -4.3004 40 1 3.2819 -2.7804 -0.1135 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236423748.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:38 Heat of formation + Delta-G solvation = 44.737520 kcal Electronic energy + Delta-G solvation = -21432.889884 eV Core-core repulsion = 18404.471558 eV Total energy + Delta-G solvation = -3028.418325 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.70125 -39.58838 -37.80191 -35.56479 -33.79213 -32.56369 -31.97492 -30.12735 -28.43559 -27.69987 -27.40876 -24.42316 -23.57797 -23.05477 -22.12805 -21.05321 -19.40483 -17.51310 -17.39898 -16.52551 -16.44322 -16.33723 -16.11158 -15.98604 -15.42182 -15.26577 -14.67089 -14.28800 -14.05971 -13.69872 -13.59808 -13.36879 -13.17573 -12.92080 -12.88304 -12.85736 -12.72335 -12.60866 -12.46595 -12.28192 -11.93274 -11.67751 -11.49702 -11.23234 -10.28797 -9.79450 -9.57716 -9.49168 -9.22610 -8.93510 -8.31439 -6.46643 0.34816 0.63019 0.98489 1.27454 1.37366 1.49153 1.53623 2.20153 2.82552 2.89491 3.36524 3.85195 3.98482 4.04249 4.18526 4.27502 4.32963 4.37304 4.40734 4.50068 4.54267 4.61645 4.68567 4.73675 4.79653 4.83515 4.86893 4.99907 5.03682 5.08911 5.19366 5.27036 5.29866 5.44954 5.65034 5.70709 5.77229 5.85849 6.04675 6.10014 6.16959 6.19724 6.28295 6.33961 6.71868 6.98576 8.17337 8.41486 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.014419 B = 0.005751 C = 0.004728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.474116 B = 4867.602786 C = 5920.742782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.567 5.567 3 C 0.023 3.977 4 C 0.103 3.897 5 C -0.080 4.080 6 C -0.127 4.127 7 C -0.121 4.121 8 C -0.125 4.125 9 C -0.004 4.004 10 C -0.242 4.242 11 C -0.045 4.045 12 C -0.313 4.313 13 C 0.107 3.893 14 N -0.522 5.522 15 C 0.235 3.765 16 C -0.449 4.449 17 H 0.096 0.904 18 C 0.024 3.976 19 N -0.750 5.750 20 Si 0.976 3.024 21 H -0.254 1.254 22 H -0.266 1.266 23 H -0.261 1.261 24 C -0.115 4.115 25 H 0.036 0.964 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.039 0.961 31 H 0.083 0.917 32 H 0.058 0.942 33 H 0.141 0.859 34 H 0.140 0.860 35 H 0.105 0.895 36 H 0.123 0.877 37 H 0.127 0.873 38 H 0.138 0.862 39 H 0.280 0.720 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.693 7.911 8.235 15.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.291 5.291 3 C -0.125 4.125 4 C -0.024 4.024 5 C -0.081 4.081 6 C -0.146 4.146 7 C -0.139 4.139 8 C -0.144 4.144 9 C -0.005 4.005 10 C -0.247 4.247 11 C -0.069 4.069 12 C -0.336 4.336 13 C -0.059 4.059 14 N -0.234 5.234 15 C 0.111 3.889 16 C -0.480 4.480 17 H 0.114 0.886 18 C -0.198 4.198 19 N -0.372 5.372 20 Si 0.796 3.204 21 H -0.178 1.178 22 H -0.190 1.190 23 H -0.186 1.186 24 C -0.133 4.133 25 H 0.055 0.945 26 H 0.092 0.908 27 H 0.088 0.912 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.058 0.942 31 H 0.101 0.899 32 H 0.076 0.924 33 H 0.158 0.842 34 H 0.158 0.842 35 H 0.123 0.877 36 H 0.141 0.859 37 H 0.145 0.855 38 H 0.155 0.845 39 H 0.090 0.910 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -9.785 7.767 6.964 14.303 hybrid contribution -0.241 0.254 0.740 0.818 sum -10.027 8.021 7.703 14.974 Atomic orbital electron populations 1.22409 0.85788 1.02701 1.01206 1.61895 1.08979 1.14760 1.43454 1.22440 1.00928 0.88138 1.01012 1.20992 0.90271 0.99100 0.92005 1.19737 0.95741 0.94470 0.98135 1.21167 0.92621 0.99265 1.01502 1.21224 0.96168 0.97324 0.99150 1.21341 0.99267 0.95237 0.98517 1.18730 0.93137 0.93700 0.94934 1.19753 1.06957 0.93372 1.04569 1.21247 0.96715 0.91787 0.97165 1.21560 1.07800 0.99033 1.05192 1.23035 0.93358 0.95412 0.94112 1.68691 1.27843 0.98114 1.28767 1.18968 0.88550 0.93021 0.88324 1.20045 1.19270 0.93023 1.15621 0.88577 1.27027 0.95507 1.02307 0.94962 1.70206 1.19468 1.32536 1.14968 0.85354 0.78793 0.77176 0.79107 1.17779 1.19020 1.18553 1.21081 0.93527 0.98713 1.00021 0.94518 0.90798 0.91178 0.92202 0.91064 0.94242 0.89882 0.92403 0.84158 0.84190 0.87718 0.85945 0.85471 0.84501 0.90972 0.87326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 9.57 127.69 1.22 1.70 16 2 N -0.57 -13.77 5.01 -953.46 -4.78 -18.55 16 3 C 0.02 0.50 9.13 127.69 1.17 1.66 16 4 C 0.10 2.48 5.11 85.56 0.44 2.92 16 5 C -0.08 -2.45 4.88 -19.90 -0.10 -2.55 16 6 C -0.13 -3.59 7.96 22.35 0.18 -3.41 16 7 C -0.12 -3.85 10.03 22.23 0.22 -3.63 16 8 C -0.13 -5.06 7.56 22.54 0.17 -4.89 16 9 C 0.00 -0.19 5.03 -20.04 -0.10 -0.29 16 10 C -0.24 -12.08 5.53 -19.51 -0.11 -12.18 16 11 C -0.05 -2.04 9.68 22.66 0.22 -1.82 16 12 C -0.31 -13.94 10.10 22.50 0.23 -13.71 16 13 C 0.11 5.30 11.17 84.97 0.95 6.25 16 14 N -0.52 -29.87 7.85 -188.43 -1.48 -31.35 16 15 C 0.24 13.26 6.56 40.38 0.26 13.53 16 16 C -0.45 -24.62 7.96 23.37 0.19 -24.43 16 17 H 0.10 5.01 5.24 -2.91 -0.02 5.00 16 18 C 0.02 1.27 5.50 85.33 0.47 1.74 16 19 N -0.75 -41.09 11.46 21.86 0.25 -40.84 16 20 Si 0.98 38.83 29.56 68.60 2.03 40.85 16 21 H -0.25 -9.62 7.11 99.48 0.71 -8.91 16 22 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16 23 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 24 C -0.11 -4.32 9.20 22.54 0.21 -4.11 16 25 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.07 1.23 8.12 -2.39 -0.02 1.21 16 27 H 0.07 1.22 8.12 -2.39 -0.02 1.20 16 28 H 0.06 1.51 6.16 -2.39 -0.01 1.50 16 29 H 0.07 1.42 8.12 -2.39 -0.02 1.40 16 30 H 0.04 0.70 8.14 -2.38 -0.02 0.68 16 31 H 0.08 1.91 8.01 -2.39 -0.02 1.89 16 32 H 0.06 1.16 8.06 -2.38 -0.02 1.14 16 33 H 0.14 3.02 8.03 -2.91 -0.02 2.99 16 34 H 0.14 3.61 8.06 -2.91 -0.02 3.59 16 35 H 0.10 4.58 7.24 -2.91 -0.02 4.56 16 36 H 0.12 4.76 8.06 -2.91 -0.02 4.74 16 37 H 0.13 4.72 8.06 -2.91 -0.02 4.70 16 38 H 0.14 5.98 8.06 -2.91 -0.02 5.95 16 39 H 0.28 13.86 8.29 -92.71 -0.77 13.09 16 40 H 0.11 4.08 8.06 -2.91 -0.02 4.06 16 Total: -1.00 -65.25 332.14 2.66 -62.59 By element: Atomic # 1 Polarization: 29.50 SS G_CDS: 1.03 Total: 30.53 kcal Atomic # 6 Polarization: -48.84 SS G_CDS: 5.61 Total: -43.23 kcal Atomic # 7 Polarization: -84.74 SS G_CDS: -6.00 Total: -90.74 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 2.03 Total: 40.85 kcal Total: -65.25 2.66 -62.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236423748.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.324 kcal (2) G-P(sol) polarization free energy of solvation -65.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds