Wall clock time and date at job start Tue Mar 31 2020 06:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.46906 * 110.99813 * 2 1 4 4 C 1.46898 * 110.99939 * 123.95415 * 2 1 3 5 5 C 1.50700 * 109.47306 * 66.04974 * 4 2 1 6 6 C 1.38425 * 119.92409 * 89.99522 * 5 4 2 7 7 C 1.38379 * 120.30349 * 180.02562 * 6 5 4 8 8 C 1.37944 * 120.15202 * 359.97438 * 7 6 5 9 9 C 1.39649 * 119.84574 * 0.02562 * 8 7 6 10 10 C 1.47846 * 120.15280 * 179.97438 * 9 8 7 11 11 C 1.39307 * 120.78415 * 129.99839 * 10 9 8 12 12 N 1.31674 * 120.66169 * 179.72383 * 11 10 9 13 13 C 1.32211 * 122.50411 * 0.27793 * 12 11 10 14 14 C 1.36489 * 121.50395 * 0.02562 * 13 12 11 15 15 C 1.41109 * 119.10878 * 359.97438 * 14 13 12 16 16 C 1.40941 * 121.10972 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99983 * 154.55700 * 16 15 14 18 18 C 1.40183 * 119.99576 * 334.55974 * 16 15 14 19 19 N 1.30679 * 119.99784 * 344.38151 * 18 16 15 20 20 Si 1.86800 * 119.99467 * 164.38372 * 18 16 15 21 21 H 1.48501 * 109.47151 * 90.00026 * 20 18 16 22 22 H 1.48501 * 109.46644 * 209.99461 * 20 18 16 23 23 H 1.48499 * 109.47486 * 329.99446 * 20 18 16 24 24 C 1.37902 * 119.92205 * 270.23808 * 5 4 2 25 25 H 1.09000 * 109.47220 * 296.04565 * 1 2 3 26 26 H 1.09004 * 109.47229 * 56.04604 * 1 2 3 27 27 H 1.09004 * 109.47322 * 176.04286 * 1 2 3 28 28 H 1.09007 * 109.46914 * 183.94972 * 3 2 1 29 29 H 1.08999 * 109.47394 * 303.95563 * 3 2 1 30 30 H 1.09002 * 109.47052 * 63.95901 * 3 2 1 31 31 H 1.08998 * 109.47233 * 306.04630 * 4 2 1 32 32 H 1.09005 * 109.46815 * 186.04678 * 4 2 1 33 33 H 1.07995 * 119.84710 * 0.02562 * 6 5 4 34 34 H 1.07997 * 119.92812 * 179.97438 * 7 6 5 35 35 H 1.08002 * 120.07983 * 179.97438 * 8 7 6 36 36 H 1.07994 * 119.66582 * 0.02562 * 11 10 9 37 37 H 1.08004 * 119.24609 * 180.02562 * 13 12 11 38 38 H 1.07999 * 120.44455 * 180.02562 * 14 13 12 39 39 H 0.97000 * 119.99436 * 180.02562 * 19 18 16 40 40 H 1.07995 * 120.07498 * 0.02562 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.9953 -0.7660 1.1376 5 6 1.6369 -2.2204 0.9728 6 6 2.4962 -3.0714 0.2993 7 6 2.1747 -4.4082 0.1430 8 6 0.9943 -4.9018 0.6587 9 6 0.1227 -4.0489 1.3392 10 6 -1.1444 -4.5706 1.8942 11 6 -1.5023 -4.3157 3.2161 12 7 -2.6340 -4.7770 3.7063 13 6 -3.4773 -5.4991 2.9883 14 6 -3.2188 -5.8108 1.6849 15 6 -2.0238 -5.3498 1.0928 16 6 -1.7149 -5.6463 -0.2500 17 1 -1.0604 -4.9949 -0.8101 18 6 -2.2573 -6.7867 -0.8586 19 7 -2.7888 -7.7285 -0.1250 20 14 -2.2201 -6.9600 -2.7182 21 1 -0.9661 -7.6426 -3.1267 22 1 -3.3879 -7.7617 -3.1639 23 1 -2.2768 -5.6136 -3.3421 24 6 0.4513 -2.6995 1.4890 25 1 -0.3634 0.4512 0.9233 26 1 -0.3634 0.5740 -0.8525 27 1 -0.3634 -1.0252 -0.0709 28 1 3.0827 1.3433 -0.0708 29 1 1.5897 1.9164 -0.8524 30 1 1.7043 1.8724 0.9234 31 1 1.5610 -0.3873 2.0628 32 1 3.0797 -0.6611 1.1756 33 1 3.4218 -2.6902 -0.1060 34 1 2.8494 -5.0666 -0.3839 35 1 0.7443 -5.9453 0.5356 36 1 -0.8473 -3.7298 3.8437 37 1 -4.3914 -5.8505 3.4437 38 1 -3.9200 -6.4016 1.1141 39 1 -3.1638 -8.5178 -0.5461 40 1 -0.2202 -2.0335 2.0105 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236424479.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:18 Heat of formation + Delta-G solvation = 47.234560 kcal Electronic energy + Delta-G solvation = -21499.093527 eV Core-core repulsion = 18470.783481 eV Total energy + Delta-G solvation = -3028.310046 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.23231 -38.11464 -36.65040 -34.25420 -32.22524 -30.99089 -30.28330 -28.36878 -27.44859 -26.41282 -25.99939 -22.76412 -22.27832 -21.46690 -20.86121 -19.48749 -17.66590 -16.00053 -15.65757 -15.35452 -15.34689 -15.06897 -14.61116 -14.44802 -14.13756 -13.90713 -13.17300 -12.75013 -12.46307 -12.35694 -12.30506 -12.24944 -12.03070 -11.72750 -11.55721 -11.51242 -11.42210 -11.28203 -11.05215 -10.69217 -10.39319 -10.35657 -9.78252 -9.51937 -8.52782 -8.40166 -8.09838 -8.00294 -7.88971 -7.33660 -6.92928 -4.66071 1.87218 2.01288 2.70917 2.84456 2.97423 3.02477 3.19420 3.78411 4.04996 4.55290 4.59835 5.04358 5.16056 5.27268 5.37859 5.52783 5.55690 5.61571 5.65302 5.73447 5.76642 5.77505 5.79078 5.95136 6.16540 6.20907 6.23601 6.28778 6.65083 6.73233 6.80538 6.84431 6.99564 7.04001 7.07727 7.15094 7.19004 7.32379 7.35903 7.51979 7.67686 7.83276 8.02686 8.37134 8.62307 8.66487 9.56721 9.93844 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.014828 B = 0.005705 C = 0.004824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.835659 B = 4907.103042 C = 5803.330100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.541 5.541 3 C 0.025 3.975 4 C 0.099 3.901 5 C -0.088 4.088 6 C -0.123 4.123 7 C -0.127 4.127 8 C -0.097 4.097 9 C 0.023 3.977 10 C -0.235 4.235 11 C 0.128 3.872 12 N -0.579 5.579 13 C 0.081 3.919 14 C -0.208 4.208 15 C 0.146 3.854 16 C -0.439 4.439 17 H 0.087 0.913 18 C 0.078 3.922 19 N -0.779 5.779 20 Si 0.908 3.092 21 H -0.266 1.266 22 H -0.274 1.274 23 H -0.258 1.258 24 C -0.121 4.121 25 H 0.023 0.977 26 H 0.063 0.937 27 H 0.081 0.919 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.022 0.978 31 H 0.038 0.962 32 H 0.077 0.923 33 H 0.109 0.891 34 H 0.112 0.888 35 H 0.126 0.874 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.125 0.875 39 H 0.285 0.715 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.910 8.714 -2.143 11.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.265 5.265 3 C -0.124 4.124 4 C -0.028 4.028 5 C -0.089 4.089 6 C -0.141 4.141 7 C -0.146 4.146 8 C -0.115 4.115 9 C 0.022 3.978 10 C -0.240 4.240 11 C -0.030 4.030 12 N -0.293 5.293 13 C -0.067 4.067 14 C -0.231 4.231 15 C 0.138 3.862 16 C -0.470 4.470 17 H 0.106 0.894 18 C -0.143 4.143 19 N -0.403 5.403 20 Si 0.732 3.268 21 H -0.191 1.191 22 H -0.199 1.199 23 H -0.181 1.181 24 C -0.140 4.140 25 H 0.042 0.958 26 H 0.082 0.918 27 H 0.099 0.901 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.041 0.959 31 H 0.057 0.943 32 H 0.095 0.905 33 H 0.127 0.873 34 H 0.130 0.870 35 H 0.144 0.856 36 H 0.137 0.863 37 H 0.135 0.865 38 H 0.143 0.857 39 H 0.096 0.904 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 6.676 8.422 -1.699 10.881 hybrid contribution -0.157 -0.071 -1.050 1.064 sum 6.519 8.350 -2.749 10.945 Atomic orbital electron populations 1.22486 0.86966 1.03530 0.99855 1.61997 1.08487 1.12920 1.43103 1.22381 1.00540 0.89178 1.00260 1.21010 0.99701 0.90822 0.91276 1.19397 0.95377 0.94008 1.00104 1.20764 0.99483 0.93465 1.00420 1.20988 0.97344 0.95307 1.00914 1.21433 0.92778 1.00492 0.96829 1.18642 0.92832 0.91756 0.94571 1.19551 0.96369 1.12710 0.95395 1.22068 0.92908 0.96072 0.91952 1.67312 1.05640 1.17127 1.39269 1.21719 0.97188 0.95640 0.92117 1.21901 0.98900 1.06188 0.96066 1.17733 0.89151 0.86911 0.92435 1.19626 1.24685 1.06749 0.95894 0.89449 1.26031 0.92449 0.94811 1.01003 1.69741 1.26694 1.05717 1.38139 0.86285 0.78922 0.79803 0.81807 1.19098 1.19884 1.18120 1.21113 0.96171 0.94993 1.01719 0.95836 0.91788 0.90053 0.91573 0.91522 0.95930 0.94345 0.90482 0.87273 0.86992 0.85568 0.86257 0.86476 0.85704 0.90364 0.87194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.12 60.06 0.55 0.82 16 2 N -0.54 -7.23 5.01 -252.72 -1.27 -8.49 16 3 C 0.02 0.25 9.57 60.07 0.57 0.83 16 4 C 0.10 1.33 5.11 -4.98 -0.03 1.30 16 5 C -0.09 -1.43 4.89 -104.68 -0.51 -1.94 16 6 C -0.12 -1.96 9.70 -39.46 -0.38 -2.34 16 7 C -0.13 -2.18 10.03 -39.64 -0.40 -2.58 16 8 C -0.10 -1.94 8.06 -39.16 -0.32 -2.25 16 9 C 0.02 0.48 5.00 -104.90 -0.52 -0.05 16 10 C -0.23 -5.52 5.54 -104.04 -0.58 -6.10 16 11 C 0.13 2.95 10.72 -17.22 -0.18 2.77 16 12 N -0.58 -14.00 10.32 -13.36 -0.14 -14.14 16 13 C 0.08 1.93 11.09 -18.02 -0.20 1.73 16 14 C -0.21 -5.23 8.72 -39.12 -0.34 -5.57 16 15 C 0.15 3.69 5.59 -106.26 -0.59 3.09 16 16 C -0.44 -10.85 7.29 -37.83 -0.28 -11.12 16 17 H 0.09 2.14 6.68 -52.49 -0.35 1.79 16 18 C 0.08 1.83 5.21 -17.31 -0.09 1.73 16 19 N -0.78 -18.78 10.95 55.56 0.61 -18.17 16 20 Si 0.91 17.74 29.59 -169.99 -5.03 12.71 16 21 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 22 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 23 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 24 C -0.12 -2.21 7.45 -39.16 -0.29 -2.50 16 25 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.06 0.78 8.12 -51.93 -0.42 0.36 16 27 H 0.08 1.30 6.15 -51.93 -0.32 0.98 16 28 H 0.07 0.61 8.12 -51.92 -0.42 0.19 16 29 H 0.07 0.63 8.12 -51.93 -0.42 0.21 16 30 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.04 0.50 8.06 -51.93 -0.42 0.08 16 32 H 0.08 0.91 8.01 -51.93 -0.42 0.50 16 33 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 34 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 35 H 0.13 2.70 7.34 -52.49 -0.39 2.31 16 36 H 0.12 2.45 8.05 -52.49 -0.42 2.03 16 37 H 0.12 2.47 8.06 -52.48 -0.42 2.04 16 38 H 0.13 3.16 6.27 -52.49 -0.33 2.84 16 39 H 0.29 6.24 8.29 -40.82 -0.34 5.91 16 40 H 0.11 1.95 8.01 -52.49 -0.42 1.53 16 LS Contribution 331.95 15.07 5.00 5.00 Total: -1.00 -26.77 331.95 -9.99 -36.76 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -5.57 Total: 8.51 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: -3.59 Total: -22.18 kcal Atomic # 7 Polarization: -40.00 SS G_CDS: -0.80 Total: -40.80 kcal Atomic # 14 Polarization: 17.74 SS G_CDS: -5.03 Total: 12.71 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -26.77 -9.99 -36.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236424479.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.992 kcal (2) G-P(sol) polarization free energy of solvation -26.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds