Wall clock time and date at job start Tue Mar 31 2020 06:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46902 * 111.00112 * 2 1 4 4 C 1.46898 * 110.99833 * 123.95209 * 2 1 3 5 5 C 1.50705 * 109.46923 * 66.04340 * 4 2 1 6 6 C 1.38340 * 119.94323 * 269.97784 * 5 4 2 7 7 C 1.38298 * 120.24674 * 179.97438 * 6 5 4 8 8 C 1.38039 * 120.12429 * 359.76703 * 7 6 5 9 9 C 1.39327 * 119.87127 * 0.52646 * 8 7 6 10 10 C 1.48390 * 120.11888 * 179.72286 * 9 8 7 11 11 C 1.40034 * 120.81862 * 179.72959 * 10 9 8 12 12 C 1.38515 * 119.42168 * 180.02562 * 11 10 9 13 13 N 1.31476 * 121.14208 * 359.97438 * 12 11 10 14 14 C 1.33642 * 121.79729 * 0.02562 * 13 12 11 15 15 C 1.41427 * 119.78042 * 179.97438 * 14 13 12 16 16 H 1.07995 * 120.00204 * 180.02562 * 15 14 13 17 17 C 1.40033 * 119.99728 * 359.97438 * 15 14 13 18 18 N 1.30738 * 120.00040 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99965 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46924 * 60.00603 * 19 17 15 21 21 H 1.48503 * 109.47115 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47232 * 300.00350 * 19 17 15 23 23 C 1.39305 * 120.82236 * 359.75058 * 10 9 8 24 24 C 1.37996 * 119.93486 * 90.00176 * 5 4 2 25 25 H 1.09003 * 109.47146 * 296.05005 * 1 2 3 26 26 H 1.09000 * 109.47363 * 56.04301 * 1 2 3 27 27 H 1.09000 * 109.47435 * 176.04624 * 1 2 3 28 28 H 1.08995 * 109.46879 * 183.95590 * 3 2 1 29 29 H 1.09000 * 109.46935 * 303.95141 * 3 2 1 30 30 H 1.08999 * 109.46750 * 63.95299 * 3 2 1 31 31 H 1.08996 * 109.47252 * 306.04974 * 4 2 1 32 32 H 1.09003 * 109.46988 * 186.04276 * 4 2 1 33 33 H 1.08000 * 119.87601 * 359.97438 * 6 5 4 34 34 H 1.08003 * 119.94010 * 180.02562 * 7 6 5 35 35 H 1.07996 * 120.06885 * 180.28164 * 8 7 6 36 36 H 1.08001 * 120.29314 * 359.97438 * 11 10 9 37 37 H 1.08000 * 119.42281 * 179.72121 * 12 11 10 38 38 H 0.97001 * 119.99817 * 180.02562 * 18 17 15 39 39 H 1.08004 * 120.58340 * 359.95717 * 23 10 9 40 40 H 1.08000 * 120.06310 * 359.97144 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 1.6368 -2.2204 0.9729 6 6 0.4499 -2.7024 1.4953 7 6 0.1144 -4.0359 1.3473 8 6 0.9608 -4.8925 0.6727 9 6 2.1602 -4.4138 0.1498 10 6 3.0770 -5.3313 -0.5711 11 6 4.2835 -4.8646 -1.1073 12 6 5.1174 -5.7461 -1.7752 13 7 4.7960 -7.0134 -1.9140 14 6 3.6568 -7.5090 -1.4212 15 6 3.3534 -8.8793 -1.5957 16 1 2.4337 -9.2834 -1.1994 17 6 4.2451 -9.7117 -2.2834 18 7 5.3582 -9.2224 -2.7636 19 14 3.8447 -11.5218 -2.5133 20 1 2.5735 -11.6554 -3.2694 21 1 4.9410 -12.1792 -3.2691 22 1 3.7009 -12.1696 -1.1848 23 6 2.7586 -6.6779 -0.7315 24 6 2.4932 -3.0691 0.3016 25 1 -0.3633 0.4513 0.9233 26 1 -0.3634 0.5740 -0.8524 27 1 -0.3634 -1.0252 -0.0709 28 1 3.0828 1.3432 -0.0709 29 1 1.5899 1.9163 -0.8525 30 1 1.7044 1.8723 0.9233 31 1 1.5610 -0.3872 2.0628 32 1 3.0797 -0.6611 1.1756 33 1 -0.2170 -2.0349 2.0206 34 1 -0.8137 -4.4068 1.7568 35 1 0.6957 -5.9327 0.5537 36 1 4.5611 -3.8262 -1.0017 37 1 6.0458 -5.3853 -2.1927 38 1 5.9757 -9.7990 -3.2403 39 1 1.8375 -7.0761 -0.3321 40 1 3.4195 -2.6917 -0.1059 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236426120.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:03 Heat of formation + Delta-G solvation = 60.404366 kcal Electronic energy + Delta-G solvation = -20746.453693 eV Core-core repulsion = 17718.714733 eV Total energy + Delta-G solvation = -3027.738960 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.48332 -38.04588 -36.88336 -33.73331 -32.38769 -31.41990 -29.98820 -28.67763 -27.66159 -26.77760 -25.64324 -22.98251 -22.74956 -21.64898 -20.52021 -19.88479 -17.36882 -16.41696 -15.69210 -15.56088 -15.44539 -15.14869 -14.58948 -14.40804 -14.17988 -13.60438 -13.52085 -12.85044 -12.69531 -12.59410 -12.36887 -12.20353 -12.09823 -11.95454 -11.77481 -11.63382 -11.27990 -11.17375 -11.02378 -10.73645 -10.54413 -10.27830 -9.79209 -9.54756 -9.06532 -8.60516 -8.38083 -7.66094 -7.57163 -7.43594 -6.40044 -4.53001 1.40304 1.69837 2.77136 3.05667 3.08432 3.10534 3.21044 3.89212 3.94574 4.36599 4.79088 4.81032 4.94195 5.06482 5.17818 5.23093 5.28628 5.36424 5.45514 5.52663 5.61974 5.68573 5.78470 5.84181 5.88583 5.92619 6.06489 6.23025 6.27550 6.55553 6.66483 6.70731 6.77638 6.81608 6.88011 6.94180 7.01300 7.16671 7.28364 7.35047 7.54419 7.73809 8.00958 8.21651 8.65167 8.90885 10.11282 10.32056 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.031667 B = 0.003435 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.992657 B = 8150.113887 C = 8788.479817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.542 5.542 3 C 0.025 3.975 4 C 0.097 3.903 5 C -0.086 4.086 6 C -0.129 4.129 7 C -0.122 4.122 8 C -0.112 4.112 9 C -0.017 4.017 10 C -0.003 4.003 11 C -0.302 4.302 12 C 0.124 3.876 13 N -0.483 5.483 14 C 0.255 3.745 15 C -0.433 4.433 16 H 0.083 0.917 17 C 0.069 3.931 18 N -0.716 5.716 19 Si 0.907 3.093 20 H -0.265 1.265 21 H -0.277 1.277 22 H -0.265 1.265 23 C -0.253 4.253 24 C -0.090 4.090 25 H 0.022 0.978 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.023 0.977 31 H 0.040 0.960 32 H 0.082 0.918 33 H 0.111 0.889 34 H 0.117 0.883 35 H 0.125 0.875 36 H 0.097 0.903 37 H 0.119 0.881 38 H 0.273 0.727 39 H 0.102 0.898 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.111 13.431 6.212 16.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.265 5.265 3 C -0.123 4.123 4 C -0.030 4.030 5 C -0.086 4.086 6 C -0.148 4.148 7 C -0.140 4.140 8 C -0.131 4.131 9 C -0.017 4.017 10 C -0.009 4.009 11 C -0.325 4.325 12 C -0.041 4.041 13 N -0.196 5.196 14 C 0.130 3.870 15 C -0.464 4.464 16 H 0.101 0.899 17 C -0.156 4.156 18 N -0.337 5.337 19 Si 0.731 3.269 20 H -0.189 1.189 21 H -0.202 1.202 22 H -0.189 1.189 23 C -0.276 4.276 24 C -0.109 4.109 25 H 0.041 0.959 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.041 0.959 31 H 0.058 0.942 32 H 0.100 0.900 33 H 0.129 0.871 34 H 0.135 0.865 35 H 0.143 0.857 36 H 0.115 0.885 37 H 0.137 0.863 38 H 0.084 0.916 39 H 0.120 0.880 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.196 12.559 5.210 14.942 hybrid contribution -1.027 0.245 1.062 1.497 sum -7.223 12.804 6.272 15.983 Atomic orbital electron populations 1.22466 0.87336 1.02973 0.99914 1.61957 1.08203 1.13304 1.43051 1.22390 1.00931 0.88748 1.00272 1.21033 1.00358 0.90352 0.91215 1.19511 0.95210 0.94400 0.99491 1.20891 0.96577 0.95591 1.01702 1.20962 0.99534 0.93540 0.99974 1.21341 0.93897 1.00114 0.97714 1.19082 0.93775 0.92991 0.95901 1.18596 0.93369 0.92612 0.96294 1.21351 0.98655 0.99492 1.13017 1.22460 0.97066 0.90583 0.94026 1.68710 1.17995 1.11413 1.21442 1.18540 0.87160 0.93349 0.87945 1.19581 1.04745 0.92086 1.30030 0.89901 1.26061 0.94451 1.00720 0.94381 1.70124 1.06198 1.36117 1.21293 0.86396 0.79130 0.81945 0.79392 1.18927 1.20207 1.18929 1.21860 1.02368 0.93263 1.10086 1.21098 0.99579 0.92417 0.97792 0.95948 0.91625 0.90563 0.91247 0.91355 0.95887 0.94231 0.89984 0.87111 0.86468 0.85673 0.88453 0.86299 0.91552 0.87985 0.85766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.14 60.07 0.55 0.77 16 2 N -0.54 -6.33 5.01 -252.72 -1.27 -7.59 16 3 C 0.02 0.22 9.57 60.07 0.57 0.80 16 4 C 0.10 1.15 5.11 -4.97 -0.03 1.13 16 5 C -0.09 -1.23 4.88 -104.67 -0.51 -1.74 16 6 C -0.13 -1.72 7.96 -39.52 -0.31 -2.04 16 7 C -0.12 -1.74 10.03 -39.63 -0.40 -2.13 16 8 C -0.11 -1.93 9.45 -39.25 -0.37 -2.30 16 9 C -0.02 -0.34 5.88 -104.89 -0.62 -0.95 16 10 C 0.00 -0.06 5.91 -104.65 -0.62 -0.68 16 11 C -0.30 -6.84 9.52 -38.81 -0.37 -7.21 16 12 C 0.12 3.03 11.17 -17.60 -0.20 2.83 16 13 N -0.48 -13.46 7.85 -11.20 -0.09 -13.55 16 14 C 0.25 7.01 6.55 -85.02 -0.56 6.46 16 15 C -0.43 -11.63 9.14 -37.70 -0.34 -11.98 16 16 H 0.08 2.06 7.85 -52.49 -0.41 1.65 16 17 C 0.07 1.77 5.50 -17.34 -0.10 1.67 16 18 N -0.72 -19.21 11.46 55.55 0.64 -18.58 16 19 Si 0.91 18.62 29.56 -169.99 -5.02 13.60 16 20 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 21 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 22 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 23 C -0.25 -6.23 9.22 -38.34 -0.35 -6.59 16 24 C -0.09 -1.53 9.10 -39.25 -0.36 -1.89 16 25 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 26 H 0.06 0.61 8.12 -51.93 -0.42 0.19 16 27 H 0.08 0.88 6.17 -51.93 -0.32 0.56 16 28 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 29 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 30 H 0.02 0.19 8.14 -51.93 -0.42 -0.24 16 31 H 0.04 0.42 8.06 -51.93 -0.42 0.00 16 32 H 0.08 0.92 8.01 -51.93 -0.42 0.51 16 33 H 0.11 1.21 8.03 -52.49 -0.42 0.79 16 34 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 35 H 0.13 2.11 6.29 -52.49 -0.33 1.78 16 36 H 0.10 1.94 6.32 -52.49 -0.33 1.61 16 37 H 0.12 2.58 8.06 -52.49 -0.42 2.16 16 38 H 0.27 6.65 8.29 -40.82 -0.34 6.31 16 39 H 0.10 2.31 6.33 -52.48 -0.33 1.97 16 40 H 0.12 2.07 6.29 -52.49 -0.33 1.74 16 LS Contribution 331.70 15.07 5.00 5.00 Total: -1.00 -29.78 331.70 -10.15 -39.93 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -5.40 Total: 5.03 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: -4.00 Total: -23.83 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: -0.72 Total: -39.72 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.02 Total: 13.60 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.78 -10.15 -39.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236426120.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.336 kcal (2) G-P(sol) polarization free energy of solvation -29.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds