Wall clock time and date at job start Tue Mar 31 2020 05:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47014 * 2 1 4 4 N 1.46498 * 109.46802 * 119.99899 * 2 1 3 5 5 C 1.39233 * 119.99828 * 85.00506 * 4 2 1 6 6 C 1.39217 * 119.92260 * 179.97438 * 5 4 2 7 7 C 1.37644 * 120.06832 * 179.97438 * 6 5 4 8 8 C 1.39838 * 119.92888 * 359.97438 * 7 6 5 9 9 C 1.47626 * 120.07217 * 180.02562 * 8 7 6 10 10 N 1.32668 * 120.00068 * 316.20628 * 9 8 7 11 11 C 1.31721 * 121.70860 * 179.97438 * 10 9 8 12 12 C 1.38895 * 121.51444 * 0.02562 * 11 10 9 13 13 C 1.36867 * 119.81641 * 359.97438 * 12 11 10 14 14 C 1.41112 * 118.40682 * 0.25130 * 13 12 11 15 15 C 1.40832 * 120.72351 * 179.75029 * 14 13 12 16 16 H 1.08001 * 120.00554 * 150.49827 * 15 14 13 17 17 C 1.40034 * 119.99946 * 330.50059 * 15 14 13 18 18 N 1.30802 * 120.00258 * 163.04055 * 17 15 14 19 19 Si 1.86796 * 120.00021 * 343.04587 * 17 15 14 20 20 H 1.48501 * 109.47505 * 90.36396 * 19 17 15 21 21 H 1.48500 * 109.47361 * 210.36701 * 19 17 15 22 22 H 1.48500 * 109.47182 * 330.36595 * 19 17 15 23 23 C 1.39832 * 119.84846 * 0.27187 * 8 7 6 24 24 C 1.37647 * 119.92892 * 359.42951 * 23 8 7 25 25 H 1.09007 * 109.46875 * 59.99861 * 1 2 3 26 26 H 1.09000 * 109.47293 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46985 * 300.00093 * 1 2 3 28 28 H 1.09003 * 109.46985 * 239.99907 * 2 1 3 29 29 H 1.09003 * 109.46669 * 180.02562 * 3 2 1 30 30 H 1.08994 * 109.47122 * 299.99736 * 3 2 1 31 31 H 1.09003 * 109.47320 * 60.00112 * 3 2 1 32 32 H 0.97000 * 120.00245 * 264.99319 * 4 2 1 33 33 H 1.07991 * 119.96458 * 359.97270 * 6 5 4 34 34 H 1.08006 * 120.03449 * 180.02562 * 7 6 5 35 35 H 1.07996 * 119.23835 * 179.97438 * 11 10 9 36 36 H 1.07997 * 120.08417 * 179.97438 * 12 11 10 37 37 H 1.08002 * 120.79055 * 179.97438 * 13 12 11 38 38 H 0.96994 * 120.00278 * 180.02562 * 18 17 15 39 39 H 1.08007 * 120.03724 * 179.69965 * 23 8 7 40 40 H 1.07995 * 119.96359 * 180.29689 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1513 -2.0766 1.1943 6 6 2.6159 -2.7312 2.3317 7 6 2.7481 -4.1012 2.3333 8 6 2.4146 -4.8357 1.1910 9 6 2.5545 -6.3053 1.1895 10 7 3.6382 -6.8690 1.7072 11 6 3.7977 -8.1764 1.7239 12 6 2.8376 -9.0317 1.1989 13 6 1.6949 -8.5166 0.6491 14 6 1.5319 -7.1151 0.6297 15 6 0.3777 -6.5326 0.0712 16 1 0.0142 -5.5873 0.4464 17 6 -0.2988 -7.1791 -0.9705 18 7 -1.5252 -6.8344 -1.2673 19 14 0.5501 -8.5340 -1.9364 20 1 0.2814 -9.8445 -1.2917 21 1 0.0301 -8.5507 -3.3273 22 1 2.0137 -8.2840 -1.9581 23 6 1.9531 -4.1744 0.0486 24 6 1.8174 -2.8047 0.0557 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 2.2490 -0.1823 1.9895 33 1 2.8730 -2.1634 3.2137 34 1 3.1082 -4.6086 3.2162 35 1 4.6961 -8.5927 2.1551 36 1 2.9923 -10.1002 1.2244 37 1 0.9382 -9.1672 0.2360 38 1 -1.9939 -7.2824 -1.9886 39 1 1.6992 -4.7382 -0.8369 40 1 1.4565 -2.2938 -0.8247 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236480568.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:25 Heat of formation + Delta-G solvation = 43.655257 kcal Electronic energy + Delta-G solvation = -21344.606189 eV Core-core repulsion = 18316.140933 eV Total energy + Delta-G solvation = -3028.465256 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.23883 -38.31326 -36.21642 -34.05111 -32.38440 -31.38171 -30.29318 -30.12937 -27.42749 -27.08868 -25.38512 -22.91304 -22.12093 -21.60718 -20.46686 -19.82595 -17.54798 -17.05246 -16.33169 -15.69402 -15.34318 -14.65055 -14.52696 -14.04401 -13.63627 -13.57708 -13.41031 -12.98929 -12.72799 -12.50968 -12.37464 -12.31299 -12.20985 -12.07098 -11.83582 -11.45647 -11.32378 -10.95741 -10.92059 -10.85968 -10.28441 -10.15030 -9.93542 -9.51467 -9.49536 -8.45989 -8.18941 -8.12007 -7.83219 -7.08708 -6.65320 -4.55639 1.96619 2.23993 2.54352 2.80000 3.00816 3.12174 3.21901 3.70472 3.84983 4.45970 4.64463 4.82841 5.04787 5.18799 5.39091 5.50823 5.54798 5.61480 5.65551 5.68774 5.74677 5.85437 6.00676 6.02275 6.12306 6.23525 6.27370 6.30965 6.35157 6.45637 6.60224 6.82282 6.87309 6.92641 7.00145 7.28608 7.37329 7.46638 7.56926 7.70411 7.81567 7.90687 8.12225 8.21337 8.45611 8.61428 9.43997 9.90768 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.018037 B = 0.005309 C = 0.004309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.010533 B = 5272.970447 C = 6497.044878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.145 3.855 3 C -0.158 4.158 4 N -0.749 5.749 5 C 0.200 3.800 6 C -0.206 4.206 7 C -0.058 4.058 8 C -0.043 4.043 9 C 0.051 3.949 10 N -0.448 5.448 11 C -0.042 4.042 12 C -0.125 4.125 13 C -0.214 4.214 14 C 0.059 3.941 15 C -0.422 4.422 16 H 0.104 0.896 17 C 0.083 3.917 18 N -0.793 5.793 19 Si 0.910 3.090 20 H -0.267 1.267 21 H -0.288 1.288 22 H -0.247 1.247 23 C -0.040 4.040 24 C -0.202 4.202 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.053 0.947 28 H 0.078 0.922 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.392 0.608 33 H 0.109 0.891 34 H 0.115 0.885 35 H 0.124 0.876 36 H 0.102 0.898 37 H 0.111 0.889 38 H 0.288 0.712 39 H 0.131 0.869 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.303 9.922 0.244 10.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.039 3.961 3 C -0.216 4.216 4 N -0.380 5.380 5 C 0.099 3.901 6 C -0.228 4.228 7 C -0.078 4.078 8 C -0.046 4.046 9 C -0.090 4.090 10 N -0.155 5.155 11 C -0.200 4.200 12 C -0.145 4.145 13 C -0.239 4.239 14 C 0.054 3.946 15 C -0.450 4.450 16 H 0.122 0.878 17 C -0.138 4.138 18 N -0.416 5.416 19 Si 0.736 3.264 20 H -0.193 1.193 21 H -0.215 1.215 22 H -0.170 1.170 23 C -0.060 4.060 24 C -0.225 4.225 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.096 0.904 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.226 0.774 33 H 0.127 0.873 34 H 0.133 0.867 35 H 0.142 0.858 36 H 0.120 0.880 37 H 0.128 0.872 38 H 0.099 0.901 39 H 0.149 0.851 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 3.629 10.492 0.264 11.105 hybrid contribution -0.533 -1.167 -0.476 1.369 sum 3.096 9.325 -0.212 9.828 Atomic orbital electron populations 1.22316 0.96174 1.02946 1.01459 1.20799 0.93572 0.92446 0.89289 1.22047 1.01516 0.95703 1.02345 1.44508 1.74538 1.03511 1.15462 1.17781 0.95100 0.83063 0.94152 1.20307 1.10601 0.94637 0.97257 1.20927 0.96848 0.92497 0.97499 1.18152 1.02126 0.90733 0.93590 1.19541 0.91281 0.91659 1.06534 1.67134 1.22358 1.12919 1.13114 1.21671 1.00205 0.88905 1.09170 1.21329 0.95329 0.99003 0.98808 1.21180 0.99429 0.95256 1.08064 1.18466 0.92647 0.91416 0.92066 1.19504 1.04348 1.07404 1.13765 0.87844 1.26222 0.93731 0.96552 0.97276 1.69665 1.09452 1.37237 1.25214 0.86375 0.82062 0.80508 0.77426 1.19340 1.21527 1.17004 1.21189 0.93925 0.92762 0.98100 1.20492 1.10286 0.94181 0.97503 0.92305 0.91663 0.92749 0.90414 0.92200 0.91428 0.92439 0.77426 0.87321 0.86672 0.85822 0.88005 0.87179 0.90132 0.85128 0.86836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.92 9.41 37.16 0.35 -1.57 16 2 C 0.14 1.62 2.87 -67.93 -0.20 1.43 16 3 C -0.16 -1.34 9.38 37.16 0.35 -0.99 16 4 N -0.75 -9.70 5.23 -52.12 -0.27 -9.97 16 5 C 0.20 3.33 6.64 -83.77 -0.56 2.77 16 6 C -0.21 -3.54 9.87 -39.43 -0.39 -3.93 16 7 C -0.06 -1.16 9.65 -39.20 -0.38 -1.54 16 8 C -0.04 -0.97 5.26 -104.87 -0.55 -1.52 16 9 C 0.05 1.26 6.42 -82.26 -0.53 0.73 16 10 N -0.45 -10.74 10.15 -9.19 -0.09 -10.83 16 11 C -0.04 -0.93 11.16 -17.36 -0.19 -1.12 16 12 C -0.12 -2.71 10.03 -39.83 -0.40 -3.11 16 13 C -0.21 -5.12 7.31 -38.99 -0.29 -5.41 16 14 C 0.06 1.49 5.12 -106.41 -0.54 0.95 16 15 C -0.42 -10.86 7.21 -37.93 -0.27 -11.13 16 16 H 0.10 2.82 6.71 -52.49 -0.35 2.46 16 17 C 0.08 2.06 5.44 -17.32 -0.09 1.97 16 18 N -0.79 -19.97 13.93 55.55 0.77 -19.19 16 19 Si 0.91 19.98 24.53 -169.99 -4.17 15.81 16 20 H -0.27 -5.70 6.46 56.52 0.37 -5.33 16 21 H -0.29 -6.06 7.11 56.52 0.40 -5.66 16 22 H -0.25 -5.65 7.00 56.52 0.40 -5.25 16 23 C -0.04 -0.85 7.85 -39.20 -0.31 -1.16 16 24 C -0.20 -3.68 8.80 -39.44 -0.35 -4.03 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.89 7.67 -51.93 -0.40 0.50 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.08 0.94 6.47 -51.93 -0.34 0.60 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.39 4.35 8.61 -40.82 -0.35 4.00 16 33 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 34 H 0.12 2.25 8.06 -52.48 -0.42 1.83 16 35 H 0.12 2.34 8.06 -52.49 -0.42 1.91 16 36 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 37 H 0.11 2.57 4.54 -52.49 -0.24 2.33 16 38 H 0.29 6.57 8.29 -40.82 -0.34 6.23 16 39 H 0.13 2.89 6.75 -52.48 -0.35 2.54 16 40 H 0.11 1.86 6.06 -52.49 -0.32 1.54 16 LS Contribution 324.87 15.07 4.90 4.90 Total: -1.00 -27.63 324.87 -8.54 -36.18 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -5.33 Total: 10.79 kcal Atomic # 6 Polarization: -23.33 SS G_CDS: -4.35 Total: -27.67 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: 0.41 Total: -39.99 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -4.17 Total: 15.81 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -27.63 -8.54 -36.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236480568.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.832 kcal (2) G-P(sol) polarization free energy of solvation -27.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds