Wall clock time and date at job start Tue Mar 31 2020 05:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47068 * 2 1 4 4 N 1.46503 * 109.47253 * 119.99745 * 2 1 3 5 5 C 1.39478 * 119.99590 * 84.99927 * 4 2 1 6 6 C 1.39052 * 119.95112 * 179.97438 * 5 4 2 7 7 C 1.37812 * 120.04742 * 179.97438 * 6 5 4 8 8 C 1.39442 * 119.95485 * 0.02562 * 7 6 5 9 9 C 1.48272 * 120.05335 * 179.97438 * 8 7 6 10 10 C 1.38964 * 119.62237 * 180.02562 * 9 8 7 11 11 C 1.40817 * 118.75682 * 179.97438 * 10 9 8 12 12 C 1.41531 * 120.98198 * 180.29503 * 11 10 9 13 13 H 1.08009 * 119.99871 * 150.07565 * 12 11 10 14 14 C 1.40040 * 120.00501 * 330.07786 * 12 11 10 15 15 N 1.30732 * 120.00549 * 162.10428 * 14 12 11 16 16 Si 1.86803 * 119.99579 * 342.10388 * 14 12 11 17 17 H 1.48504 * 109.46734 * 95.41041 * 16 14 12 18 18 H 1.48500 * 109.47148 * 215.40762 * 16 14 12 19 19 H 1.48498 * 109.47234 * 335.41085 * 16 14 12 20 20 C 1.41160 * 118.03330 * 0.02585 * 11 10 9 21 21 C 1.37710 * 119.08705 * 0.02562 * 20 11 10 22 22 N 1.31938 * 121.16311 * 359.97111 * 21 20 11 23 23 C 1.39448 * 119.90267 * 0.27582 * 8 7 6 24 24 C 1.37818 * 119.95539 * 359.42375 * 23 8 7 25 25 H 1.09001 * 109.47018 * 59.99852 * 1 2 3 26 26 H 1.08996 * 109.47036 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47216 * 299.99926 * 1 2 3 28 28 H 1.09000 * 109.47216 * 240.00074 * 2 1 3 29 29 H 1.09005 * 109.47341 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47322 * 299.99962 * 3 2 1 31 31 H 1.09000 * 109.47041 * 59.99967 * 3 2 1 32 32 H 0.96998 * 119.99900 * 265.00360 * 4 2 1 33 33 H 1.08007 * 119.97549 * 359.97438 * 6 5 4 34 34 H 1.07998 * 120.02505 * 180.02562 * 7 6 5 35 35 H 1.07998 * 120.62430 * 0.02562 * 10 9 8 36 36 H 0.96997 * 120.00221 * 180.02562 * 15 14 12 37 37 H 1.08005 * 120.45794 * 179.97438 * 20 11 10 38 38 H 1.07999 * 119.41655 * 180.02562 * 21 20 11 39 39 H 1.08003 * 120.02332 * 179.70433 * 23 8 7 40 40 H 1.07999 * 119.98079 * 180.27606 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1516 -2.0790 1.1943 6 6 2.6157 -2.7334 2.3300 7 6 2.7475 -4.1052 2.3305 8 6 2.4156 -4.8370 1.1909 9 6 2.5572 -6.3129 1.1889 10 6 2.2244 -7.0333 0.0481 11 6 2.3663 -8.4342 0.0660 12 6 2.0470 -9.2134 -1.0715 13 1 2.5693 -10.1409 -1.2546 14 6 1.0540 -8.7820 -1.9596 15 7 0.9906 -9.2858 -3.1643 16 14 -0.1803 -7.4866 -1.4229 17 1 0.2853 -6.1469 -1.8631 18 1 -1.5013 -7.7775 -2.0356 19 1 -0.3059 -7.5055 0.0567 20 6 2.8420 -9.0377 1.2501 21 6 3.1456 -8.2416 2.3320 22 7 2.9997 -6.9314 2.2779 23 6 1.9564 -4.1781 0.0510 24 6 1.8201 -2.8067 0.0567 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 3.1300 1.4426 0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 2.2490 -0.1822 1.9895 33 1 2.8730 -2.1662 3.2124 34 1 3.1077 -4.6132 3.2130 35 1 1.8644 -6.5282 -0.8360 36 1 0.3030 -8.9866 -3.7796 37 1 2.9654 -10.1092 1.3071 38 1 3.5103 -8.6977 3.2405 39 1 1.7033 -4.7425 -0.8344 40 1 1.4602 -2.2964 -0.8244 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236480919.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:34 Heat of formation + Delta-G solvation = 41.155258 kcal Electronic energy + Delta-G solvation = -21012.317246 eV Core-core repulsion = 17983.743582 eV Total energy + Delta-G solvation = -3028.573664 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.50112 -38.38986 -36.50994 -34.02561 -32.61945 -31.42507 -30.46024 -30.17855 -27.53954 -27.01056 -25.86091 -23.14665 -22.68268 -21.52868 -20.59132 -19.89167 -17.76387 -17.26449 -16.14288 -15.80322 -15.28192 -14.75079 -14.70479 -14.30971 -13.87536 -13.63868 -13.42693 -13.18351 -13.04705 -12.88347 -12.79762 -12.55207 -12.37196 -12.20533 -11.61656 -11.57697 -11.22303 -11.18531 -10.92567 -10.78019 -10.61304 -10.42305 -10.01486 -9.78763 -9.38447 -8.56283 -8.24680 -8.11862 -8.04184 -7.05113 -6.78332 -4.69630 1.56095 1.85128 2.63874 2.74908 3.06318 3.17660 3.28669 3.42046 3.91177 4.23253 4.61299 4.66524 4.84056 4.96767 5.18631 5.24718 5.31369 5.35002 5.45530 5.46546 5.53814 5.64387 5.78596 5.80437 5.89115 5.94204 6.06756 6.10237 6.38954 6.42504 6.48650 6.59431 6.66234 6.74731 6.95628 7.08304 7.15502 7.21914 7.33785 7.53209 7.68964 7.81481 7.97344 8.23423 8.47192 8.67478 9.37596 9.96518 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.018758 B = 0.004776 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.298667 B = 5861.701453 C = 7057.935960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.143 3.857 3 C -0.159 4.159 4 N -0.747 5.747 5 C 0.210 3.790 6 C -0.204 4.204 7 C -0.039 4.039 8 C -0.081 4.081 9 C 0.182 3.818 10 C -0.271 4.271 11 C 0.111 3.889 12 C -0.442 4.442 13 H 0.094 0.906 14 C 0.088 3.912 15 N -0.800 5.800 16 Si 0.906 3.094 17 H -0.265 1.265 18 H -0.287 1.287 19 H -0.244 1.244 20 C -0.261 4.261 21 C 0.110 3.890 22 N -0.568 5.568 23 C -0.063 4.063 24 C -0.202 4.202 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.079 0.921 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.395 0.605 33 H 0.115 0.885 34 H 0.133 0.867 35 H 0.109 0.891 36 H 0.287 0.713 37 H 0.108 0.892 38 H 0.127 0.873 39 H 0.123 0.877 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.909 17.260 4.579 17.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.037 3.963 3 C -0.217 4.217 4 N -0.378 5.378 5 C 0.108 3.892 6 C -0.226 4.226 7 C -0.058 4.058 8 C -0.084 4.084 9 C 0.050 3.950 10 C -0.294 4.294 11 C 0.103 3.897 12 C -0.473 4.473 13 H 0.112 0.888 14 C -0.132 4.132 15 N -0.424 5.424 16 Si 0.732 3.268 17 H -0.191 1.191 18 H -0.215 1.215 19 H -0.168 1.168 20 C -0.284 4.284 21 C -0.043 4.043 22 N -0.283 5.283 23 C -0.082 4.082 24 C -0.224 4.224 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.097 0.903 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.229 0.771 33 H 0.133 0.867 34 H 0.150 0.850 35 H 0.127 0.873 36 H 0.098 0.902 37 H 0.126 0.874 38 H 0.145 0.855 39 H 0.141 0.859 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.847 17.739 4.876 18.416 hybrid contribution -0.757 0.044 -0.522 0.920 sum -1.604 17.783 4.355 18.378 Atomic orbital electron populations 1.22313 0.96099 1.02709 1.01767 1.20849 0.93603 0.92729 0.89119 1.22049 1.01673 0.95421 1.02529 1.44644 1.74064 1.03346 1.15707 1.17818 0.94102 0.83282 0.93970 1.20486 1.09885 0.94770 0.97465 1.21045 0.94670 0.92214 0.97865 1.18555 1.03977 0.91567 0.94252 1.19171 0.94735 0.91246 0.89877 1.21883 1.13814 0.94658 0.99020 1.17879 0.88519 0.91219 0.92123 1.19500 1.17453 1.07636 1.02664 0.88761 1.26146 0.98178 0.95742 0.93152 1.69642 1.30246 1.37943 1.04553 0.86402 0.78469 0.80137 0.81826 1.19126 1.21459 1.16761 1.21935 1.12647 0.99302 0.94513 1.21942 0.95998 0.89368 0.96972 1.67367 1.22377 1.11068 1.27457 1.21147 0.95796 0.93545 0.97722 1.20485 1.10308 0.93866 0.97750 0.92067 0.91964 0.92566 0.90318 0.92052 0.91248 0.92320 0.77092 0.86659 0.84962 0.87306 0.90212 0.87387 0.85536 0.85872 0.86388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.54 9.42 37.16 0.35 -1.19 16 2 C 0.14 1.32 2.87 -67.93 -0.20 1.12 16 3 C -0.16 -1.09 9.38 37.16 0.35 -0.75 16 4 N -0.75 -8.09 5.24 -52.14 -0.27 -8.36 16 5 C 0.21 3.01 6.64 -83.78 -0.56 2.46 16 6 C -0.20 -3.04 9.88 -39.44 -0.39 -3.43 16 7 C -0.04 -0.69 9.56 -39.29 -0.38 -1.07 16 8 C -0.08 -1.66 5.88 -104.87 -0.62 -2.27 16 9 C 0.18 4.29 6.73 -83.04 -0.56 3.74 16 10 C -0.27 -6.73 6.63 -38.34 -0.25 -6.99 16 11 C 0.11 2.85 5.12 -106.56 -0.55 2.30 16 12 C -0.44 -11.91 9.63 -37.65 -0.36 -12.28 16 13 H 0.09 2.63 8.06 -52.48 -0.42 2.21 16 14 C 0.09 2.30 5.43 -17.34 -0.09 2.21 16 15 N -0.80 -20.95 13.92 55.55 0.77 -20.18 16 16 Si 0.91 20.77 24.55 -169.99 -4.17 16.60 16 17 H -0.27 -5.76 6.20 56.52 0.35 -5.41 16 18 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 19 H -0.24 -5.91 6.85 56.52 0.39 -5.52 16 20 C -0.26 -6.15 9.90 -38.67 -0.38 -6.53 16 21 C 0.11 2.43 11.15 -17.70 -0.20 2.23 16 22 N -0.57 -13.16 9.39 -9.95 -0.09 -13.26 16 23 C -0.06 -1.18 9.40 -39.28 -0.37 -1.55 16 24 C -0.20 -3.19 8.82 -39.43 -0.35 -3.54 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.68 7.69 -51.93 -0.40 0.28 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.08 0.79 6.47 -51.93 -0.34 0.46 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.39 3.57 8.61 -40.82 -0.35 3.22 16 33 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 34 H 0.13 2.35 7.52 -52.49 -0.39 1.96 16 35 H 0.11 2.64 2.97 -52.49 -0.16 2.49 16 36 H 0.29 6.79 8.29 -40.82 -0.34 6.45 16 37 H 0.11 2.34 8.06 -52.48 -0.42 1.92 16 38 H 0.13 2.32 8.06 -52.49 -0.42 1.90 16 39 H 0.12 2.40 5.64 -52.48 -0.30 2.11 16 40 H 0.12 1.63 6.08 -52.49 -0.32 1.31 16 LS Contribution 325.89 15.07 4.91 4.91 Total: -1.00 -28.70 325.89 -8.66 -37.35 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -5.26 Total: 8.48 kcal Atomic # 6 Polarization: -21.00 SS G_CDS: -4.55 Total: -25.54 kcal Atomic # 7 Polarization: -42.20 SS G_CDS: 0.41 Total: -41.79 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.17 Total: 16.60 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.70 -8.66 -37.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236480919.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.510 kcal (2) G-P(sol) polarization free energy of solvation -28.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds