Wall clock time and date at job start Tue Mar 31 2020 05:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47068 * 2 1 4 4 N 1.46503 * 109.47253 * 119.99745 * 2 1 3 5 5 C 1.39478 * 119.99590 * 84.99927 * 4 2 1 6 6 C 1.39052 * 119.95112 * 179.97438 * 5 4 2 7 7 C 1.37812 * 120.04742 * 179.97438 * 6 5 4 8 8 C 1.39442 * 119.95485 * 0.02562 * 7 6 5 9 9 C 1.48272 * 120.05335 * 179.97438 * 8 7 6 10 10 C 1.38964 * 119.62237 * 180.02562 * 9 8 7 11 11 C 1.40817 * 118.75682 * 179.97438 * 10 9 8 12 12 C 1.41531 * 120.98198 * 180.29503 * 11 10 9 13 13 H 1.08009 * 119.99871 * 150.07565 * 12 11 10 14 14 C 1.40040 * 120.00501 * 330.07786 * 12 11 10 15 15 N 1.30732 * 120.00549 * 162.10428 * 14 12 11 16 16 Si 1.86803 * 119.99579 * 342.10388 * 14 12 11 17 17 H 1.48504 * 109.46734 * 95.41041 * 16 14 12 18 18 H 1.48500 * 109.47148 * 215.40762 * 16 14 12 19 19 H 1.48498 * 109.47234 * 335.41085 * 16 14 12 20 20 C 1.41160 * 118.03330 * 0.02585 * 11 10 9 21 21 C 1.37710 * 119.08705 * 0.02562 * 20 11 10 22 22 N 1.31938 * 121.16311 * 359.97111 * 21 20 11 23 23 C 1.39448 * 119.90267 * 0.27582 * 8 7 6 24 24 C 1.37818 * 119.95539 * 359.42375 * 23 8 7 25 25 H 1.09001 * 109.47018 * 59.99852 * 1 2 3 26 26 H 1.08996 * 109.47036 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47216 * 299.99926 * 1 2 3 28 28 H 1.09000 * 109.47216 * 240.00074 * 2 1 3 29 29 H 1.09005 * 109.47341 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47322 * 299.99962 * 3 2 1 31 31 H 1.09000 * 109.47041 * 59.99967 * 3 2 1 32 32 H 0.96998 * 119.99900 * 265.00360 * 4 2 1 33 33 H 1.08007 * 119.97549 * 359.97438 * 6 5 4 34 34 H 1.07998 * 120.02505 * 180.02562 * 7 6 5 35 35 H 1.07998 * 120.62430 * 0.02562 * 10 9 8 36 36 H 0.96997 * 120.00221 * 180.02562 * 15 14 12 37 37 H 1.08005 * 120.45794 * 179.97438 * 20 11 10 38 38 H 1.07999 * 119.41655 * 180.02562 * 21 20 11 39 39 H 1.08003 * 120.02332 * 179.70433 * 23 8 7 40 40 H 1.07999 * 119.98079 * 180.27606 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1516 -2.0790 1.1943 6 6 2.6157 -2.7334 2.3300 7 6 2.7475 -4.1052 2.3305 8 6 2.4156 -4.8370 1.1909 9 6 2.5572 -6.3129 1.1889 10 6 2.2244 -7.0333 0.0481 11 6 2.3663 -8.4342 0.0660 12 6 2.0470 -9.2134 -1.0715 13 1 2.5693 -10.1409 -1.2546 14 6 1.0540 -8.7820 -1.9596 15 7 0.9906 -9.2858 -3.1643 16 14 -0.1803 -7.4866 -1.4229 17 1 0.2853 -6.1469 -1.8631 18 1 -1.5013 -7.7775 -2.0356 19 1 -0.3059 -7.5055 0.0567 20 6 2.8420 -9.0377 1.2501 21 6 3.1456 -8.2416 2.3320 22 7 2.9997 -6.9314 2.2779 23 6 1.9564 -4.1781 0.0510 24 6 1.8201 -2.8067 0.0567 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 3.1300 1.4426 0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 2.2490 -0.1822 1.9895 33 1 2.8730 -2.1662 3.2124 34 1 3.1077 -4.6132 3.2130 35 1 1.8644 -6.5282 -0.8360 36 1 0.3030 -8.9866 -3.7796 37 1 2.9654 -10.1092 1.3071 38 1 3.5103 -8.6977 3.2405 39 1 1.7033 -4.7425 -0.8344 40 1 1.4602 -2.2964 -0.8244 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236480919.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:34 Heat of formation + Delta-G solvation = 24.869971 kcal Electronic energy + Delta-G solvation = -21013.023429 eV Core-core repulsion = 17983.743582 eV Total energy + Delta-G solvation = -3029.279847 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.91642 -39.92916 -37.57592 -35.94871 -33.83693 -33.28607 -31.78159 -31.59380 -28.60335 -27.99031 -27.72438 -24.67986 -23.98525 -23.11796 -21.87916 -21.20380 -19.54477 -18.54855 -17.73849 -17.06181 -16.79012 -16.39640 -16.12975 -15.57107 -15.14752 -15.00869 -14.82887 -14.70619 -14.61590 -14.36291 -14.03030 -13.60747 -13.41622 -13.22608 -13.02335 -12.84621 -12.71837 -12.58365 -12.32377 -12.29784 -11.97401 -11.77620 -11.64913 -11.29930 -11.14171 -10.15289 -9.94817 -9.86710 -9.64632 -9.01679 -8.08058 -6.72798 0.02165 0.55548 0.75114 1.08400 1.19778 1.37343 1.41820 2.04223 2.49592 2.56831 3.00400 3.58714 3.61667 3.90089 3.98889 4.09461 4.18962 4.21214 4.36785 4.43631 4.54479 4.64079 4.69572 4.73186 4.76510 4.81021 4.89606 4.96055 5.04031 5.10145 5.15241 5.20989 5.28153 5.32573 5.37420 5.38873 5.52215 5.71737 5.87992 5.89893 6.07820 6.25278 6.44044 6.52865 6.67707 6.90318 7.54431 8.05732 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.018758 B = 0.004776 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.298667 B = 5861.701453 C = 7057.935960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.136 3.864 3 C -0.152 4.152 4 N -0.732 5.732 5 C 0.228 3.772 6 C -0.199 4.199 7 C -0.039 4.039 8 C -0.125 4.125 9 C 0.182 3.818 10 C -0.291 4.291 11 C 0.095 3.905 12 C -0.477 4.477 13 H 0.068 0.932 14 C 0.060 3.940 15 N -0.832 5.832 16 Si 0.952 3.048 17 H -0.250 1.250 18 H -0.268 1.268 19 H -0.267 1.267 20 C -0.278 4.278 21 C 0.115 3.885 22 N -0.569 5.569 23 C -0.072 4.072 24 C -0.205 4.205 25 H 0.077 0.923 26 H 0.040 0.960 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.060 0.940 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.408 0.592 33 H 0.149 0.851 34 H 0.130 0.870 35 H 0.108 0.892 36 H 0.298 0.702 37 H 0.120 0.880 38 H 0.169 0.831 39 H 0.107 0.893 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.234 21.087 6.033 21.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.031 3.969 3 C -0.210 4.210 4 N -0.361 5.361 5 C 0.123 3.877 6 C -0.221 4.221 7 C -0.058 4.058 8 C -0.128 4.128 9 C 0.049 3.951 10 C -0.314 4.314 11 C 0.087 3.913 12 C -0.508 4.508 13 H 0.086 0.914 14 C -0.157 4.157 15 N -0.457 5.457 16 Si 0.776 3.224 17 H -0.175 1.175 18 H -0.194 1.194 19 H -0.191 1.191 20 C -0.300 4.300 21 C -0.038 4.038 22 N -0.284 5.284 23 C -0.092 4.092 24 C -0.228 4.228 25 H 0.096 0.904 26 H 0.059 0.941 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.101 0.899 31 H 0.088 0.912 32 H 0.245 0.755 33 H 0.167 0.833 34 H 0.148 0.852 35 H 0.126 0.874 36 H 0.109 0.891 37 H 0.138 0.862 38 H 0.186 0.814 39 H 0.125 0.875 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.174 21.606 6.316 22.540 hybrid contribution -0.581 -0.932 -0.849 1.388 sum -1.755 20.673 5.467 21.456 Atomic orbital electron populations 1.22284 0.95690 1.01669 1.02971 1.21053 0.93876 0.94005 0.87991 1.22000 1.01598 0.93611 1.03778 1.44782 1.72450 1.01980 1.16926 1.17895 0.91890 0.84839 0.93053 1.20746 1.08860 0.93739 0.98769 1.21071 0.94505 0.93466 0.96807 1.18552 1.07897 0.90077 0.96252 1.19687 0.93064 0.93154 0.89232 1.21962 1.15124 0.94376 0.99898 1.18105 0.88794 0.91884 0.92533 1.19497 1.19159 1.07546 1.04552 0.91420 1.26671 0.98927 0.97140 0.92992 1.69644 1.31470 1.39368 1.05235 0.85695 0.77567 0.79116 0.80024 1.17493 1.19394 1.19126 1.22180 1.13012 1.00313 0.94494 1.22569 0.94414 0.89020 0.97841 1.67520 1.22087 1.11514 1.27265 1.21100 0.96446 0.94829 0.96817 1.20634 1.10199 0.92761 0.99161 0.90421 0.94065 0.91938 0.91022 0.92107 0.89910 0.91235 0.75542 0.83295 0.85202 0.87432 0.89089 0.86201 0.81400 0.87491 0.84546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.47 9.42 71.98 0.68 -1.79 16 2 C 0.14 2.01 2.87 44.99 0.13 2.14 16 3 C -0.15 -1.47 9.38 71.98 0.68 -0.79 16 4 N -0.73 -12.92 5.24 -318.87 -1.67 -14.59 16 5 C 0.23 5.83 6.64 38.32 0.25 6.08 16 6 C -0.20 -5.30 9.88 22.36 0.22 -5.08 16 7 C -0.04 -1.34 9.56 22.46 0.21 -1.12 16 8 C -0.12 -5.09 5.88 -20.03 -0.12 -5.21 16 9 C 0.18 8.63 6.73 41.84 0.28 8.91 16 10 C -0.29 -14.89 6.63 23.07 0.15 -14.74 16 11 C 0.09 5.06 5.12 -21.12 -0.11 4.95 16 12 C -0.48 -27.10 9.63 23.52 0.23 -26.88 16 13 H 0.07 4.06 8.06 -2.91 -0.02 4.03 16 14 C 0.06 3.25 5.43 85.29 0.46 3.72 16 15 N -0.83 -45.02 13.92 21.84 0.30 -44.72 16 16 Si 0.95 43.78 24.55 68.60 1.68 45.47 16 17 H -0.25 -10.73 6.20 99.48 0.62 -10.11 16 18 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 19 H -0.27 -13.14 6.85 99.48 0.68 -12.46 16 20 C -0.28 -13.29 9.90 22.86 0.23 -13.06 16 21 C 0.11 4.97 11.15 84.55 0.94 5.91 16 22 N -0.57 -26.11 9.39 -185.40 -1.74 -27.85 16 23 C -0.07 -2.71 9.40 22.46 0.21 -2.50 16 24 C -0.21 -6.10 8.82 22.37 0.20 -5.90 16 25 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.04 0.79 7.69 -2.39 -0.02 0.77 16 27 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.07 1.21 6.47 -2.39 -0.02 1.19 16 29 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 30 H 0.08 0.62 8.14 -2.39 -0.02 0.61 16 31 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.41 5.43 8.61 -92.71 -0.80 4.63 16 33 H 0.15 2.95 8.06 -2.91 -0.02 2.92 16 34 H 0.13 4.43 7.52 -2.91 -0.02 4.40 16 35 H 0.11 5.41 2.97 -2.91 -0.01 5.40 16 36 H 0.30 14.39 8.29 -92.71 -0.77 13.62 16 37 H 0.12 5.30 8.06 -2.91 -0.02 5.27 16 38 H 0.17 5.75 8.06 -2.91 -0.02 5.73 16 39 H 0.11 4.26 5.64 -2.91 -0.02 4.24 16 40 H 0.14 3.47 6.08 -2.91 -0.02 3.45 16 Total: -1.00 -64.47 325.89 3.37 -61.10 By element: Atomic # 1 Polarization: 25.80 SS G_CDS: 0.15 Total: 25.95 kcal Atomic # 6 Polarization: -50.01 SS G_CDS: 4.65 Total: -45.36 kcal Atomic # 7 Polarization: -84.05 SS G_CDS: -3.11 Total: -87.15 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 1.68 Total: 45.47 kcal Total: -64.47 3.37 -61.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236480919.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.966 kcal (2) G-P(sol) polarization free energy of solvation -64.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds