Wall clock time and date at job start Tue Mar 31 2020 05:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47108 * 2 1 4 4 N 1.46504 * 109.46932 * 120.00098 * 2 1 3 5 5 C 1.39401 * 119.99793 * 155.00173 * 4 2 1 6 6 C 1.39084 * 119.95058 * 179.97438 * 5 4 2 7 7 C 1.37786 * 120.05048 * 180.02562 * 6 5 4 8 8 C 1.39502 * 119.95307 * 359.97438 * 7 6 5 9 9 C 1.48182 * 120.05319 * 180.02562 * 8 7 6 10 10 C 1.39985 * 119.61616 * 179.97438 * 9 8 7 11 11 C 1.38655 * 119.46123 * 180.02562 * 10 9 8 12 12 C 1.38320 * 118.70005 * 0.28634 * 11 10 9 13 13 C 1.40686 * 119.19771 * 359.45235 * 12 11 10 14 14 C 1.41355 * 119.76203 * 180.27540 * 13 12 11 15 15 H 1.07991 * 120.00362 * 0.27566 * 14 13 12 16 16 C 1.40006 * 119.99824 * 180.27302 * 14 13 12 17 17 N 1.30759 * 120.00150 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00279 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.46902 * 60.00043 * 18 16 14 20 20 H 1.48503 * 109.47385 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47077 * 300.00541 * 18 16 14 22 22 N 1.32274 * 119.61206 * 0.02562 * 9 8 7 23 23 C 1.39505 * 119.89662 * 0.27893 * 8 7 6 24 24 C 1.37784 * 119.94876 * 359.44099 * 23 8 7 25 25 H 1.09004 * 109.47014 * 300.00261 * 1 2 3 26 26 H 1.09001 * 109.46959 * 59.99578 * 1 2 3 27 27 H 1.08998 * 109.47533 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46966 * 240.00445 * 2 1 3 29 29 H 1.08998 * 109.47286 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47032 * 300.00008 * 3 2 1 31 31 H 1.08998 * 109.46976 * 59.99832 * 3 2 1 32 32 H 0.96998 * 119.99862 * 334.99296 * 4 2 1 33 33 H 1.07999 * 119.97545 * 359.97438 * 6 5 4 34 34 H 1.08007 * 120.02535 * 180.02562 * 7 6 5 35 35 H 1.08004 * 120.26637 * 0.04918 * 10 9 8 36 36 H 1.08002 * 120.64646 * 180.02562 * 11 10 9 37 37 H 1.07992 * 120.40092 * 179.72382 * 12 11 10 38 38 H 0.96994 * 120.00074 * 180.02562 * 17 16 14 39 39 H 1.08005 * 120.02230 * 179.70417 * 23 8 7 40 40 H 1.08003 * 119.97493 * 180.25445 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 3.2822 -1.2787 1.1943 6 6 3.7450 -1.9337 2.3307 7 6 4.9942 -2.5152 2.3313 8 6 5.7947 -2.4471 1.1908 9 6 7.1382 -3.0722 1.1889 10 6 7.9336 -2.9988 0.0393 11 6 9.1900 -3.5853 0.0408 12 6 9.6188 -4.2343 1.1846 13 6 8.7759 -4.2696 2.3104 14 6 9.2044 -4.9246 3.4875 15 1 10.1775 -5.3917 3.5219 16 6 8.3673 -4.9677 4.6089 17 7 7.1889 -4.4025 4.5673 18 14 8.9338 -5.8325 6.1647 19 1 10.1731 -5.1866 6.6668 20 1 7.8718 -5.7377 7.1985 21 1 9.2065 -7.2612 5.8655 22 7 7.5715 -3.6938 2.2731 23 6 5.3305 -1.7851 0.0540 24 6 4.0784 -1.2100 0.0560 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4426 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.4622 -0.7386 1.9895 33 1 3.1251 -1.9858 3.2135 34 1 5.3530 -3.0240 3.2138 35 1 7.5717 -2.4892 -0.8415 36 1 9.8198 -3.5399 -0.8354 37 1 10.5905 -4.7045 1.2144 38 1 6.6091 -4.4320 5.3443 39 1 5.9506 -1.7270 -0.8285 40 1 3.7170 -0.7009 -0.8253 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236481630.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:39 Heat of formation + Delta-G solvation = 50.898620 kcal Electronic energy + Delta-G solvation = -20908.833516 eV Core-core repulsion = 17880.682356 eV Total energy + Delta-G solvation = -3028.151160 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.21815 -38.00121 -36.31515 -33.63981 -32.32527 -30.76970 -30.08077 -29.97175 -27.55084 -27.12440 -25.41068 -22.75542 -22.46535 -21.28478 -20.30996 -19.76375 -17.45843 -17.14587 -15.77826 -15.72419 -14.79818 -14.72466 -14.45688 -14.17538 -13.65382 -13.38132 -13.22414 -12.89958 -12.74554 -12.53596 -12.45194 -12.26456 -12.11094 -11.97037 -11.46503 -11.18132 -11.06699 -11.06000 -10.84555 -10.69679 -10.44698 -10.20638 -9.85200 -9.80654 -9.27703 -8.31045 -8.19026 -7.73536 -7.53385 -6.58072 -6.37301 -4.47968 1.84721 2.12745 2.89478 3.10240 3.12663 3.18369 3.28104 3.58088 3.97363 4.50337 4.70181 4.90041 4.95496 5.05987 5.38364 5.41768 5.48442 5.56893 5.61092 5.67612 5.72766 5.88983 6.01046 6.01518 6.11294 6.14168 6.24584 6.35493 6.55122 6.67651 6.76304 6.83966 6.88741 7.01558 7.17756 7.42728 7.43287 7.55152 7.67773 7.75828 7.81871 7.99852 8.11614 8.27432 8.71535 8.97233 10.13364 10.35011 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.021855 B = 0.004038 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.864883 B = 6931.690560 C = 8067.848231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.144 3.856 3 C -0.169 4.169 4 N -0.749 5.749 5 C 0.206 3.794 6 C -0.207 4.207 7 C -0.031 4.031 8 C -0.076 4.076 9 C 0.187 3.813 10 C -0.306 4.306 11 C -0.059 4.059 12 C -0.279 4.279 13 C 0.259 3.741 14 C -0.434 4.434 15 H 0.082 0.918 16 C 0.072 3.928 17 N -0.719 5.719 18 Si 0.907 3.093 19 H -0.266 1.266 20 H -0.278 1.278 21 H -0.266 1.266 22 N -0.472 5.472 23 C -0.064 4.064 24 C -0.210 4.210 25 H 0.057 0.943 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.077 0.923 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.394 0.606 33 H 0.112 0.888 34 H 0.153 0.847 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.272 0.728 39 H 0.120 0.880 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.295 7.383 -5.147 14.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.039 3.961 3 C -0.228 4.228 4 N -0.380 5.380 5 C 0.104 3.896 6 C -0.229 4.229 7 C -0.051 4.051 8 C -0.079 4.079 9 C 0.043 3.957 10 C -0.329 4.329 11 C -0.083 4.083 12 C -0.301 4.301 13 C 0.133 3.867 14 C -0.465 4.465 15 H 0.100 0.900 16 C -0.153 4.153 17 N -0.341 5.341 18 Si 0.731 3.269 19 H -0.190 1.190 20 H -0.203 1.203 21 H -0.190 1.190 22 N -0.185 5.185 23 C -0.084 4.084 24 C -0.232 4.232 25 H 0.076 0.924 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.095 0.905 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.228 0.772 33 H 0.130 0.870 34 H 0.170 0.830 35 H 0.114 0.886 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.083 0.917 39 H 0.137 0.863 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -12.012 7.433 -4.429 14.804 hybrid contribution 0.637 -0.295 0.142 0.717 sum -11.374 7.137 -4.287 14.096 Atomic orbital electron populations 1.22051 0.94836 1.02400 1.02407 1.20802 0.93589 0.92485 0.89259 1.22310 1.02290 0.96617 1.01591 1.44601 1.16162 1.61698 1.15542 1.17832 0.85151 0.92443 0.94125 1.20557 0.98527 1.06543 0.97292 1.21509 0.91111 0.93549 0.98886 1.18627 0.94069 1.01180 0.94020 1.19766 0.91829 0.93756 0.90361 1.21215 0.97949 1.14108 0.99607 1.20771 0.95038 0.96000 0.96536 1.21758 1.01732 1.10620 0.96039 1.18513 0.87188 0.89285 0.91708 1.19530 1.02056 1.29684 0.95273 0.89991 1.26012 0.94455 0.94667 1.00151 1.70074 1.06205 1.29025 1.28765 0.86405 0.79316 0.80508 0.80646 1.19045 1.20264 1.19048 1.68760 1.14989 1.11451 1.23304 1.21007 0.94521 0.95316 0.97562 1.20392 0.96021 1.09267 0.97522 0.92358 0.91393 0.92094 0.90468 0.91958 0.92270 0.92637 0.77207 0.86980 0.82967 0.88600 0.88689 0.88463 0.91717 0.86256 0.86870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 9.38 37.16 0.35 -0.84 16 2 C 0.14 1.42 2.87 -67.93 -0.20 1.22 16 3 C -0.17 -1.59 9.42 37.16 0.35 -1.24 16 4 N -0.75 -8.99 5.24 -52.14 -0.27 -9.26 16 5 C 0.21 3.22 6.64 -83.79 -0.56 2.67 16 6 C -0.21 -3.62 9.88 -39.43 -0.39 -4.01 16 7 C -0.03 -0.66 9.56 -39.28 -0.38 -1.04 16 8 C -0.08 -1.68 5.88 -104.87 -0.62 -2.30 16 9 C 0.19 4.71 6.73 -82.94 -0.56 4.15 16 10 C -0.31 -7.13 9.47 -38.77 -0.37 -7.50 16 11 C -0.06 -1.37 10.15 -39.40 -0.40 -1.77 16 12 C -0.28 -7.02 9.83 -38.63 -0.38 -7.40 16 13 C 0.26 7.20 6.55 -85.01 -0.56 6.64 16 14 C -0.43 -11.69 9.14 -37.73 -0.34 -12.03 16 15 H 0.08 2.07 7.85 -52.49 -0.41 1.65 16 16 C 0.07 1.82 5.50 -17.35 -0.10 1.73 16 17 N -0.72 -18.75 11.10 55.55 0.62 -18.13 16 18 Si 0.91 18.64 29.56 -169.99 -5.02 13.61 16 19 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 20 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 21 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 22 N -0.47 -13.09 6.91 -7.68 -0.05 -13.14 16 23 C -0.06 -1.19 9.41 -39.28 -0.37 -1.56 16 24 C -0.21 -3.37 8.82 -39.43 -0.35 -3.72 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.08 0.80 6.47 -51.93 -0.34 0.47 16 29 H 0.06 0.69 7.69 -51.93 -0.40 0.29 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.39 4.15 8.61 -40.82 -0.35 3.80 16 33 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 34 H 0.15 3.58 7.16 -52.48 -0.38 3.20 16 35 H 0.10 1.96 6.17 -52.48 -0.32 1.63 16 36 H 0.09 1.87 8.06 -52.49 -0.42 1.44 16 37 H 0.10 2.26 8.06 -52.49 -0.42 1.83 16 38 H 0.27 6.44 8.29 -40.82 -0.34 6.10 16 39 H 0.12 2.04 6.16 -52.48 -0.32 1.72 16 40 H 0.11 1.54 6.08 -52.48 -0.32 1.22 16 LS Contribution 332.70 15.07 5.01 5.01 Total: -1.00 -29.35 332.70 -9.93 -39.28 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -5.36 Total: 9.63 kcal Atomic # 6 Polarization: -22.15 SS G_CDS: -4.85 Total: -27.00 kcal Atomic # 7 Polarization: -40.83 SS G_CDS: 0.29 Total: -40.54 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.02 Total: 13.61 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.35 -9.93 -39.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236481630.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.180 kcal (2) G-P(sol) polarization free energy of solvation -29.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds