Wall clock time and date at job start Tue Mar 31 2020 05:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46907 * 2 1 4 4 N 1.46496 * 109.47024 * 119.99876 * 2 1 3 5 5 C 1.39278 * 119.99966 * 85.00443 * 4 2 1 6 6 C 1.39206 * 119.93334 * 180.02562 * 5 4 2 7 7 C 1.37671 * 120.07273 * 179.97438 * 6 5 4 8 8 C 1.39782 * 119.92600 * 359.97438 * 7 6 5 9 9 C 1.47799 * 120.06642 * 179.97438 * 8 7 6 10 10 C 1.40369 * 120.35377 * 180.25090 * 9 8 7 11 11 C 1.36599 * 118.60426 * 180.24429 * 10 9 8 12 12 C 1.40927 * 119.26448 * 359.75615 * 11 10 9 13 13 C 1.40907 * 119.67270 * 179.97438 * 12 11 10 14 14 H 1.08003 * 120.00191 * 0.02562 * 13 12 11 15 15 C 1.40058 * 120.00059 * 180.02562 * 13 12 11 16 16 N 1.30740 * 119.99911 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00209 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47165 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.46958 * 120.00279 * 17 15 13 20 20 H 1.48497 * 109.47377 * 240.00222 * 17 15 13 21 21 N 1.33805 * 120.65018 * 359.97438 * 12 11 10 22 22 C 1.31166 * 121.51165 * 359.97438 * 21 12 11 23 23 C 1.39782 * 119.86544 * 0.25419 * 8 7 6 24 24 C 1.37671 * 119.92880 * 359.47025 * 23 8 7 25 25 H 1.09000 * 109.47385 * 300.00146 * 1 2 3 26 26 H 1.09009 * 109.47088 * 60.00055 * 1 2 3 27 27 H 1.09000 * 109.47229 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47259 * 240.00393 * 2 1 3 29 29 H 1.09001 * 109.47182 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47619 * 300.00078 * 3 2 1 31 31 H 1.08995 * 109.47541 * 60.00069 * 3 2 1 32 32 H 0.97000 * 120.00011 * 264.99952 * 4 2 1 33 33 H 1.07998 * 119.96219 * 359.97233 * 6 5 4 34 34 H 1.07993 * 120.03844 * 180.02562 * 7 6 5 35 35 H 1.07994 * 120.69706 * 359.97438 * 10 9 8 36 36 H 1.08002 * 120.37286 * 179.77035 * 11 10 9 37 37 H 0.96998 * 120.00472 * 179.97438 * 16 15 13 38 38 H 1.08002 * 119.66091 * 179.97438 * 22 21 12 39 39 H 1.08007 * 120.03538 * 179.72388 * 23 8 7 40 40 H 1.07997 * 119.96227 * 180.25203 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1514 -2.0770 1.1943 6 6 2.6150 -2.7318 2.3319 7 6 2.7472 -4.1022 2.3334 8 6 2.4147 -4.8361 1.1911 9 6 2.5559 -6.3073 1.1891 10 6 2.2288 -7.0497 0.0436 11 6 2.3681 -8.4080 0.0829 12 6 2.8379 -9.0186 1.2629 13 6 2.9843 -10.4191 1.3130 14 1 2.7372 -11.0192 0.4497 15 6 3.4501 -11.0332 2.4825 16 7 3.7496 -10.3068 3.5275 17 14 3.6435 -12.8899 2.5492 18 1 3.2413 -13.4766 1.2457 19 1 5.0618 -13.2301 2.8281 20 1 2.7817 -13.4390 3.6267 21 7 3.1463 -8.2814 2.3362 22 6 3.0242 -6.9755 2.3290 23 6 1.9540 -4.1752 0.0488 24 6 1.8186 -2.8052 0.0555 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 2.2490 -0.1822 1.9894 33 1 2.8713 -2.1642 3.2142 34 1 3.1065 -4.6096 3.2163 35 1 1.8704 -6.5578 -0.8484 36 1 2.1211 -9.0075 -0.7809 37 1 4.0719 -10.7320 4.3375 38 1 3.2814 -6.4098 3.2123 39 1 1.7006 -4.7391 -0.8368 40 1 1.4589 -2.2944 -0.8254 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236485406.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:48 Heat of formation + Delta-G solvation = 33.138300 kcal Electronic energy + Delta-G solvation = -20478.642651 eV Core-core repulsion = 17449.721346 eV Total energy + Delta-G solvation = -3028.921305 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.66093 -39.71756 -37.53257 -35.57217 -33.68117 -32.62698 -31.80413 -31.43977 -29.11538 -28.04475 -26.67732 -24.62176 -23.72893 -22.90827 -21.87646 -21.04139 -19.45433 -18.44642 -17.49348 -16.98891 -16.74119 -16.16009 -15.89545 -15.41387 -14.88477 -14.74013 -14.62084 -14.41528 -14.25203 -14.02600 -13.74462 -13.47264 -13.28759 -13.02360 -12.93429 -12.87169 -12.65961 -12.51867 -12.30174 -11.96813 -11.88202 -11.72613 -11.51108 -11.41279 -10.92231 -10.15942 -9.74366 -9.53952 -9.48980 -8.32642 -7.99898 -6.40887 0.30291 0.67376 1.10936 1.33110 1.40366 1.56617 1.63428 2.21391 2.62152 2.78511 3.23918 3.94254 3.98916 4.03992 4.12339 4.19368 4.24551 4.33478 4.41481 4.45107 4.62584 4.68806 4.78232 4.80429 4.89660 4.93989 4.98080 5.00889 5.13594 5.17461 5.24684 5.31342 5.39578 5.45679 5.48035 5.56679 5.65160 5.87703 6.06228 6.11970 6.16727 6.30523 6.60329 6.69516 6.94163 6.99311 8.16662 8.40899 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.052907 B = 0.002903 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.099992 B = 9643.856858 C =10031.423765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.139 3.861 3 C -0.153 4.153 4 N -0.739 5.739 5 C 0.197 3.803 6 C -0.190 4.190 7 C -0.099 4.099 8 C -0.069 4.069 9 C -0.244 4.244 10 C -0.049 4.049 11 C -0.286 4.286 12 C 0.215 3.785 13 C -0.456 4.456 14 H 0.092 0.908 15 C 0.019 3.981 16 N -0.751 5.751 17 Si 0.992 3.008 18 H -0.252 1.252 19 H -0.265 1.265 20 H -0.265 1.265 21 N -0.520 5.520 22 C 0.118 3.882 23 C -0.096 4.096 24 C -0.192 4.192 25 H 0.057 0.943 26 H 0.077 0.923 27 H 0.042 0.958 28 H 0.072 0.928 29 H 0.058 0.942 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.403 0.597 33 H 0.136 0.864 34 H 0.116 0.884 35 H 0.129 0.871 36 H 0.112 0.888 37 H 0.281 0.719 38 H 0.133 0.867 39 H 0.121 0.879 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.437 18.273 -4.618 19.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.034 3.966 3 C -0.210 4.210 4 N -0.370 5.370 5 C 0.093 3.907 6 C -0.212 4.212 7 C -0.117 4.117 8 C -0.071 4.071 9 C -0.249 4.249 10 C -0.072 4.072 11 C -0.308 4.308 12 C 0.091 3.909 13 C -0.486 4.486 14 H 0.110 0.890 15 C -0.203 4.203 16 N -0.372 5.372 17 Si 0.811 3.189 18 H -0.175 1.175 19 H -0.190 1.190 20 H -0.190 1.190 21 N -0.233 5.233 22 C -0.047 4.047 23 C -0.115 4.115 24 C -0.214 4.214 25 H 0.076 0.924 26 H 0.096 0.904 27 H 0.061 0.939 28 H 0.090 0.910 29 H 0.077 0.923 30 H 0.102 0.898 31 H 0.084 0.916 32 H 0.238 0.762 33 H 0.154 0.846 34 H 0.134 0.866 35 H 0.147 0.853 36 H 0.130 0.870 37 H 0.091 0.909 38 H 0.151 0.849 39 H 0.139 0.861 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.131 17.885 -3.861 18.563 hybrid contribution -0.095 -0.414 -0.195 0.468 sum -3.226 17.471 -4.057 18.224 Atomic orbital electron populations 1.22273 0.95810 1.01648 1.02716 1.20991 0.93772 0.93757 0.88089 1.22000 1.01473 0.93935 1.03624 1.44639 1.73488 1.02175 1.16703 1.17839 0.94581 0.84734 0.93510 1.20610 1.08284 0.93860 0.98468 1.21040 0.99406 0.93902 0.97384 1.18627 1.02485 0.91090 0.94938 1.19400 1.15712 0.93085 0.96742 1.20992 0.95874 0.93291 0.97064 1.21619 1.13691 0.95596 0.99925 1.19113 0.89267 0.94667 0.87828 1.20045 1.37325 0.91340 0.99920 0.88957 1.27115 0.93017 1.05886 0.94313 1.70247 1.25621 1.39079 1.02272 0.85023 0.78899 0.75129 0.79831 1.17512 1.19002 1.19001 1.68708 1.20968 1.05241 1.28394 1.23086 0.93867 0.91525 0.96253 1.21057 0.98892 0.94264 0.97289 1.20666 1.08978 0.93348 0.98439 0.92381 0.90412 0.93926 0.90966 0.92314 0.89840 0.91560 0.76156 0.84641 0.86612 0.85337 0.86966 0.90858 0.84938 0.86105 0.84768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.42 9.41 71.98 0.68 -1.74 16 2 C 0.14 2.09 2.87 44.99 0.13 2.21 16 3 C -0.15 -1.56 9.38 71.98 0.68 -0.88 16 4 N -0.74 -13.97 5.23 -318.81 -1.67 -15.64 16 5 C 0.20 5.17 6.64 38.42 0.26 5.42 16 6 C -0.19 -5.43 9.87 22.37 0.22 -5.21 16 7 C -0.10 -3.46 9.43 22.51 0.21 -3.24 16 8 C -0.07 -2.69 5.88 -20.00 -0.12 -2.81 16 9 C -0.24 -11.37 5.92 -19.76 -0.12 -11.49 16 10 C -0.05 -2.23 9.46 22.41 0.21 -2.02 16 11 C -0.29 -14.50 9.76 22.55 0.22 -14.28 16 12 C 0.22 12.35 6.55 40.15 0.26 12.61 16 13 C -0.46 -25.18 9.11 23.37 0.21 -24.97 16 14 H 0.09 4.72 7.85 -2.91 -0.02 4.70 16 15 C 0.02 0.97 5.50 85.30 0.47 1.44 16 16 N -0.75 -41.33 11.44 21.84 0.25 -41.08 16 17 Si 0.99 38.33 29.56 68.60 2.03 40.35 16 18 H -0.25 -9.29 7.11 99.48 0.71 -8.58 16 19 H -0.27 -9.85 7.11 99.48 0.71 -9.15 16 20 H -0.27 -9.85 7.11 99.48 0.71 -9.15 16 21 N -0.52 -30.33 7.83 -188.18 -1.47 -31.80 16 22 C 0.12 6.08 10.60 85.26 0.90 6.99 16 23 C -0.10 -3.24 9.43 22.51 0.21 -3.03 16 24 C -0.19 -5.40 8.81 22.37 0.20 -5.20 16 25 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 27 H 0.04 0.79 7.67 -2.39 -0.02 0.77 16 28 H 0.07 1.18 6.47 -2.39 -0.02 1.17 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 31 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.40 6.25 8.61 -92.71 -0.80 5.45 16 33 H 0.14 3.13 8.06 -2.91 -0.02 3.11 16 34 H 0.12 4.02 6.21 -2.91 -0.02 4.01 16 35 H 0.13 4.94 6.29 -2.91 -0.02 4.92 16 36 H 0.11 5.18 8.06 -2.91 -0.02 5.16 16 37 H 0.28 13.84 8.29 -92.71 -0.77 13.07 16 38 H 0.13 6.19 6.20 -2.91 -0.02 6.17 16 39 H 0.12 3.82 6.24 -2.91 -0.02 3.80 16 40 H 0.13 3.12 6.07 -2.91 -0.02 3.10 16 Total: -1.00 -66.39 330.73 4.02 -62.36 By element: Atomic # 1 Polarization: 31.73 SS G_CDS: 0.26 Total: 31.99 kcal Atomic # 6 Polarization: -50.82 SS G_CDS: 4.63 Total: -46.20 kcal Atomic # 7 Polarization: -85.62 SS G_CDS: -2.89 Total: -88.52 kcal Atomic # 14 Polarization: 38.33 SS G_CDS: 2.03 Total: 40.35 kcal Total: -66.39 4.02 -62.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236485406.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.502 kcal (2) G-P(sol) polarization free energy of solvation -66.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds