Wall clock time and date at job start Tue Mar 31 2020 05:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47183 * 2 1 4 4 N 1.46499 * 109.47170 * 119.99766 * 2 1 3 5 5 C 1.39272 * 119.99932 * 84.99921 * 4 2 1 6 6 C 1.39216 * 119.92533 * 359.72841 * 5 4 2 7 7 C 1.37660 * 120.07246 * 179.72496 * 6 5 4 8 8 C 1.39838 * 119.92240 * 0.56951 * 7 6 5 9 9 C 1.47679 * 120.06969 * 179.68422 * 8 7 6 10 10 C 1.39432 * 120.79088 * 130.02381 * 9 8 7 11 11 N 1.31622 * 120.63854 * 179.97438 * 10 9 8 12 12 C 1.32257 * 122.52420 * 0.02562 * 11 10 9 13 13 C 1.36427 * 121.53187 * 0.02562 * 12 11 10 14 14 C 1.41148 * 119.11431 * 359.66166 * 13 12 11 15 15 C 1.40844 * 121.11189 * 180.31797 * 14 13 12 16 16 H 1.08003 * 120.00207 * 154.77593 * 15 14 13 17 17 C 1.40138 * 119.99962 * 334.77860 * 15 14 13 18 18 N 1.30719 * 119.99836 * 344.72116 * 17 15 14 19 19 Si 1.86795 * 120.00171 * 164.72482 * 17 15 14 20 20 H 1.48495 * 109.47381 * 94.74250 * 19 17 15 21 21 H 1.48505 * 109.47273 * 214.74032 * 19 17 15 22 22 H 1.48502 * 109.47263 * 334.74040 * 19 17 15 23 23 C 1.39830 * 119.85759 * 359.70259 * 8 7 6 24 24 C 1.37665 * 119.92148 * 0.02562 * 23 8 7 25 25 H 1.09001 * 109.47400 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47427 * 300.00495 * 1 2 3 27 27 H 1.09004 * 109.47290 * 60.00001 * 1 2 3 28 28 H 1.08999 * 109.47425 * 239.99957 * 2 1 3 29 29 H 1.09004 * 109.47343 * 59.99453 * 3 2 1 30 30 H 1.09001 * 109.47550 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47302 * 299.99712 * 3 2 1 32 32 H 0.96995 * 120.00009 * 265.00261 * 4 2 1 33 33 H 1.07996 * 119.96077 * 359.97438 * 6 5 4 34 34 H 1.07998 * 120.03891 * 180.30002 * 7 6 5 35 35 H 1.07995 * 119.67854 * 359.97438 * 10 9 8 36 36 H 1.07999 * 119.23545 * 179.97438 * 12 11 10 37 37 H 1.07999 * 120.43516 * 179.97438 * 13 12 11 38 38 H 0.97000 * 119.99943 * 180.02562 * 18 17 15 39 39 H 1.07997 * 120.04012 * 180.02562 * 23 8 7 40 40 H 1.07993 * 119.95981 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1513 -2.0769 1.1944 6 6 1.8144 -2.8054 0.0569 7 6 1.9500 -4.1753 0.0499 8 6 2.4155 -4.8361 1.1910 9 6 2.5556 -6.3062 1.1894 10 6 3.7389 -6.9109 1.6117 11 7 3.8604 -8.2215 1.6095 12 6 2.8872 -9.0251 1.2141 13 6 1.6896 -8.5360 0.7810 14 6 1.4844 -7.1396 0.7621 15 6 0.2622 -6.5894 0.3295 16 1 -0.0460 -5.6156 0.6804 17 6 -0.5540 -7.3055 -0.5564 18 7 -0.0686 -8.3270 -1.2119 19 14 -2.3357 -6.8004 -0.8006 20 1 -2.4390 -5.9042 -1.9801 21 1 -3.1672 -8.0104 -1.0241 22 1 -2.8176 -6.0850 0.4082 23 6 2.7477 -4.1018 2.3337 24 6 2.6150 -2.7316 2.3321 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.6766 1.9564 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 2.2489 -0.1822 1.9894 33 1 1.4500 -2.2949 -0.8222 34 1 1.6930 -4.7395 -0.8344 35 1 4.5637 -6.2979 1.9438 36 1 3.0446 -10.0934 1.2338 37 1 0.9071 -9.2085 0.4618 38 1 -0.6334 -8.8225 -1.8253 39 1 3.1079 -4.6091 3.2165 40 1 2.8709 -2.1639 3.2145 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236487689.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:04 Heat of formation + Delta-G solvation = 38.129184 kcal Electronic energy + Delta-G solvation = -21261.103259 eV Core-core repulsion = 18232.398375 eV Total energy + Delta-G solvation = -3028.704884 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.16934 -38.12900 -36.26997 -34.16846 -32.48376 -30.56626 -30.31562 -29.65001 -27.37579 -26.89939 -25.73391 -22.75769 -22.09887 -21.45499 -20.43107 -19.74164 -17.61817 -17.02336 -15.84704 -15.54756 -15.18386 -14.57181 -14.47802 -14.31399 -13.68765 -13.54962 -13.09593 -12.79659 -12.74011 -12.57810 -12.40183 -12.22271 -12.17371 -11.95983 -11.47425 -11.39702 -11.36164 -11.16921 -11.00838 -10.82447 -10.32683 -10.24302 -9.73491 -9.60092 -9.38855 -8.24518 -7.98964 -7.94257 -7.64856 -6.93748 -6.55274 -4.56359 2.08599 2.17862 2.76169 2.96095 3.00391 3.05838 3.25053 3.66711 3.83154 4.60848 4.64210 4.77491 4.99795 5.13671 5.45097 5.52773 5.56276 5.62214 5.67568 5.70752 5.79914 5.83773 5.96647 6.02333 6.15877 6.21902 6.26833 6.34098 6.49130 6.78699 6.87394 6.90220 6.95576 7.13260 7.14856 7.41863 7.43588 7.49033 7.66347 7.83103 7.93225 8.09588 8.12578 8.46572 8.71644 8.76596 9.66200 10.01976 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.014673 B = 0.005627 C = 0.004255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.793581 B = 4974.945345 C = 6579.459773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.145 3.855 3 C -0.158 4.158 4 N -0.750 5.750 5 C 0.191 3.809 6 C -0.200 4.200 7 C -0.051 4.051 8 C -0.034 4.034 9 C -0.220 4.220 10 C 0.121 3.879 11 N -0.579 5.579 12 C 0.078 3.922 13 C -0.209 4.209 14 C 0.143 3.857 15 C -0.440 4.440 16 H 0.086 0.914 17 C 0.078 3.922 18 N -0.782 5.782 19 Si 0.907 3.093 20 H -0.268 1.268 21 H -0.274 1.274 22 H -0.258 1.258 23 C -0.082 4.082 24 C -0.199 4.199 25 H 0.063 0.937 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.077 0.923 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.392 0.608 33 H 0.111 0.889 34 H 0.125 0.875 35 H 0.120 0.880 36 H 0.116 0.884 37 H 0.125 0.875 38 H 0.283 0.717 39 H 0.113 0.887 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.662 13.709 0.678 13.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.039 3.961 3 C -0.216 4.216 4 N -0.382 5.382 5 C 0.091 3.909 6 C -0.222 4.222 7 C -0.070 4.070 8 C -0.036 4.036 9 C -0.225 4.225 10 C -0.036 4.036 11 N -0.293 5.293 12 C -0.070 4.070 13 C -0.231 4.231 14 C 0.135 3.865 15 C -0.471 4.471 16 H 0.104 0.896 17 C -0.143 4.143 18 N -0.407 5.407 19 Si 0.731 3.269 20 H -0.193 1.193 21 H -0.199 1.199 22 H -0.182 1.182 23 C -0.101 4.101 24 C -0.221 4.221 25 H 0.082 0.918 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.095 0.905 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.225 0.775 33 H 0.129 0.871 34 H 0.143 0.857 35 H 0.137 0.863 36 H 0.134 0.866 37 H 0.143 0.857 38 H 0.095 0.905 39 H 0.131 0.869 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.008 13.146 0.585 13.159 hybrid contribution -1.669 0.692 -0.228 1.821 sum -1.677 13.838 0.357 13.944 Atomic orbital electron populations 1.22316 0.96318 1.02771 1.01474 1.20778 0.93465 0.92476 0.89333 1.22047 1.01554 0.95686 1.02334 1.44488 1.74786 1.03507 1.15412 1.17743 0.95913 0.83046 0.94236 1.20534 1.09920 0.94347 0.97389 1.21179 0.95022 0.92570 0.98247 1.18477 1.00013 0.92347 0.92785 1.19558 0.96037 0.91310 1.15619 1.22103 0.94849 0.90745 0.95937 1.67284 1.33360 1.04921 1.23755 1.21684 0.90627 0.97690 0.97004 1.21904 0.98626 0.96319 1.06274 1.17763 0.91166 0.91030 0.86579 1.19569 1.01523 1.03765 1.22237 0.89551 1.26006 1.00505 0.93714 0.94032 1.69764 1.37293 1.15521 1.18138 0.86303 0.81517 0.79238 0.79879 1.19317 1.19896 1.18202 1.21000 0.99020 0.92690 0.97394 1.20306 1.10045 0.94669 0.97109 0.91830 0.92729 0.92326 0.90473 0.92441 0.92171 0.91447 0.77463 0.87083 0.85678 0.86255 0.86624 0.85728 0.90542 0.86904 0.87442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.80 9.40 37.16 0.35 -1.46 16 2 C 0.15 1.55 2.87 -67.93 -0.20 1.36 16 3 C -0.16 -1.28 9.38 37.16 0.35 -0.93 16 4 N -0.75 -9.31 5.23 -52.12 -0.27 -9.59 16 5 C 0.19 3.04 6.64 -83.75 -0.56 2.49 16 6 C -0.20 -3.48 8.80 -39.43 -0.35 -3.83 16 7 C -0.05 -1.05 8.07 -39.19 -0.32 -1.36 16 8 C -0.03 -0.72 5.00 -104.85 -0.52 -1.24 16 9 C -0.22 -5.30 5.53 -104.04 -0.58 -5.87 16 10 C 0.12 2.86 10.71 -17.20 -0.18 2.68 16 11 N -0.58 -14.29 10.32 -13.35 -0.14 -14.43 16 12 C 0.08 1.90 11.08 -18.02 -0.20 1.70 16 13 C -0.21 -5.36 8.72 -39.13 -0.34 -5.70 16 14 C 0.14 3.69 5.59 -106.25 -0.59 3.10 16 15 C -0.44 -11.09 7.30 -37.88 -0.28 -11.37 16 16 H 0.09 2.16 6.71 -52.48 -0.35 1.81 16 17 C 0.08 1.85 5.22 -17.31 -0.09 1.76 16 18 N -0.78 -19.23 10.92 55.56 0.61 -18.62 16 19 Si 0.91 18.02 29.59 -169.99 -5.03 12.99 16 20 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 21 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 22 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 23 C -0.08 -1.54 9.53 -39.20 -0.37 -1.91 16 24 C -0.20 -3.26 9.87 -39.43 -0.39 -3.65 16 25 H 0.06 0.81 7.65 -51.93 -0.40 0.41 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.08 0.89 6.48 -51.93 -0.34 0.56 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.39 4.17 8.61 -40.82 -0.35 3.82 16 33 H 0.11 1.74 6.05 -52.49 -0.32 1.42 16 34 H 0.13 2.72 7.38 -52.49 -0.39 2.34 16 35 H 0.12 2.51 8.05 -52.49 -0.42 2.08 16 36 H 0.12 2.50 8.06 -52.49 -0.42 2.07 16 37 H 0.12 3.23 6.24 -52.49 -0.33 2.90 16 38 H 0.28 6.33 8.29 -40.82 -0.34 5.99 16 39 H 0.11 2.00 8.05 -52.49 -0.42 1.58 16 40 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 331.43 15.07 4.99 4.99 Total: -1.00 -27.53 331.43 -9.51 -37.04 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -5.41 Total: 11.85 kcal Atomic # 6 Polarization: -19.99 SS G_CDS: -4.27 Total: -24.25 kcal Atomic # 7 Polarization: -42.83 SS G_CDS: 0.20 Total: -42.63 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -5.03 Total: 12.99 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -27.53 -9.51 -37.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236487689.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.168 kcal (2) G-P(sol) polarization free energy of solvation -27.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds