Wall clock time and date at job start Tue Mar 31 2020 05:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47183 * 2 1 4 4 N 1.46499 * 109.47170 * 119.99766 * 2 1 3 5 5 C 1.39272 * 119.99932 * 84.99921 * 4 2 1 6 6 C 1.39216 * 119.92533 * 359.72841 * 5 4 2 7 7 C 1.37660 * 120.07246 * 179.72496 * 6 5 4 8 8 C 1.39838 * 119.92240 * 0.56951 * 7 6 5 9 9 C 1.47679 * 120.06969 * 179.68422 * 8 7 6 10 10 C 1.39432 * 120.79088 * 130.02381 * 9 8 7 11 11 N 1.31622 * 120.63854 * 179.97438 * 10 9 8 12 12 C 1.32257 * 122.52420 * 0.02562 * 11 10 9 13 13 C 1.36427 * 121.53187 * 0.02562 * 12 11 10 14 14 C 1.41148 * 119.11431 * 359.66166 * 13 12 11 15 15 C 1.40844 * 121.11189 * 180.31797 * 14 13 12 16 16 H 1.08003 * 120.00207 * 154.77593 * 15 14 13 17 17 C 1.40138 * 119.99962 * 334.77860 * 15 14 13 18 18 N 1.30719 * 119.99836 * 344.72116 * 17 15 14 19 19 Si 1.86795 * 120.00171 * 164.72482 * 17 15 14 20 20 H 1.48495 * 109.47381 * 94.74250 * 19 17 15 21 21 H 1.48505 * 109.47273 * 214.74032 * 19 17 15 22 22 H 1.48502 * 109.47263 * 334.74040 * 19 17 15 23 23 C 1.39830 * 119.85759 * 359.70259 * 8 7 6 24 24 C 1.37665 * 119.92148 * 0.02562 * 23 8 7 25 25 H 1.09001 * 109.47400 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47427 * 300.00495 * 1 2 3 27 27 H 1.09004 * 109.47290 * 60.00001 * 1 2 3 28 28 H 1.08999 * 109.47425 * 239.99957 * 2 1 3 29 29 H 1.09004 * 109.47343 * 59.99453 * 3 2 1 30 30 H 1.09001 * 109.47550 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47302 * 299.99712 * 3 2 1 32 32 H 0.96995 * 120.00009 * 265.00261 * 4 2 1 33 33 H 1.07996 * 119.96077 * 359.97438 * 6 5 4 34 34 H 1.07998 * 120.03891 * 180.30002 * 7 6 5 35 35 H 1.07995 * 119.67854 * 359.97438 * 10 9 8 36 36 H 1.07999 * 119.23545 * 179.97438 * 12 11 10 37 37 H 1.07999 * 120.43516 * 179.97438 * 13 12 11 38 38 H 0.97000 * 119.99943 * 180.02562 * 18 17 15 39 39 H 1.07997 * 120.04012 * 180.02562 * 23 8 7 40 40 H 1.07993 * 119.95981 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1513 -2.0769 1.1944 6 6 1.8144 -2.8054 0.0569 7 6 1.9500 -4.1753 0.0499 8 6 2.4155 -4.8361 1.1910 9 6 2.5556 -6.3062 1.1894 10 6 3.7389 -6.9109 1.6117 11 7 3.8604 -8.2215 1.6095 12 6 2.8872 -9.0251 1.2141 13 6 1.6896 -8.5360 0.7810 14 6 1.4844 -7.1396 0.7621 15 6 0.2622 -6.5894 0.3295 16 1 -0.0460 -5.6156 0.6804 17 6 -0.5540 -7.3055 -0.5564 18 7 -0.0686 -8.3270 -1.2119 19 14 -2.3357 -6.8004 -0.8006 20 1 -2.4390 -5.9042 -1.9801 21 1 -3.1672 -8.0104 -1.0241 22 1 -2.8176 -6.0850 0.4082 23 6 2.7477 -4.1018 2.3337 24 6 2.6150 -2.7316 2.3321 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.6766 1.9564 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 2.2489 -0.1822 1.9894 33 1 1.4500 -2.2949 -0.8222 34 1 1.6930 -4.7395 -0.8344 35 1 4.5637 -6.2979 1.9438 36 1 3.0446 -10.0934 1.2338 37 1 0.9071 -9.2085 0.4618 38 1 -0.6334 -8.8225 -1.8253 39 1 3.1079 -4.6091 3.2165 40 1 2.8709 -2.1639 3.2145 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236487689.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:03 Heat of formation + Delta-G solvation = 24.319266 kcal Electronic energy + Delta-G solvation = -21261.702102 eV Core-core repulsion = 18232.398375 eV Total energy + Delta-G solvation = -3029.303727 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.67167 -39.73868 -37.45583 -36.01495 -33.83932 -32.25647 -31.78301 -31.23775 -28.59680 -28.05375 -27.43771 -24.16857 -23.68001 -23.15049 -21.82340 -21.06607 -19.46761 -18.28689 -17.48520 -16.86783 -16.71772 -16.24409 -16.05250 -15.56008 -14.95337 -14.81446 -14.55073 -14.36535 -14.23562 -14.10041 -13.89349 -13.40821 -13.31131 -13.15667 -13.02330 -12.90494 -12.76759 -12.50942 -12.23050 -11.98594 -11.89979 -11.62218 -11.52187 -11.26467 -10.83933 -9.89557 -9.81762 -9.64860 -9.45925 -8.72201 -7.95623 -6.46223 0.48799 0.73961 0.99965 1.23302 1.36080 1.48423 1.54882 2.16303 2.62973 2.77443 3.14998 3.76643 3.97721 4.03380 4.17464 4.22240 4.25712 4.38062 4.42227 4.57254 4.71415 4.73744 4.78072 4.89900 4.93649 4.99552 5.02611 5.06580 5.16639 5.24613 5.28795 5.37964 5.39912 5.44932 5.53183 5.59783 5.72305 5.95201 6.09514 6.14168 6.27507 6.54254 6.63350 6.82601 6.87413 7.02956 7.75490 8.23475 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.014673 B = 0.005627 C = 0.004255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.793581 B = 4974.945345 C = 6579.459773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.139 3.861 3 C -0.151 4.151 4 N -0.737 5.737 5 C 0.207 3.793 6 C -0.204 4.204 7 C -0.063 4.063 8 C -0.071 4.071 9 C -0.220 4.220 10 C 0.109 3.891 11 N -0.590 5.590 12 C 0.073 3.927 13 C -0.231 4.231 14 C 0.112 3.888 15 C -0.458 4.458 16 H 0.080 0.920 17 C 0.041 3.959 18 N -0.810 5.810 19 Si 0.975 3.025 20 H -0.260 1.260 21 H -0.263 1.263 22 H -0.261 1.261 23 C -0.081 4.081 24 C -0.196 4.196 25 H 0.037 0.963 26 H 0.060 0.940 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.082 0.918 32 H 0.405 0.595 33 H 0.126 0.874 34 H 0.097 0.903 35 H 0.144 0.856 36 H 0.139 0.861 37 H 0.115 0.885 38 H 0.292 0.708 39 H 0.120 0.880 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.196 16.709 1.105 16.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.034 3.966 3 C -0.208 4.208 4 N -0.368 5.368 5 C 0.103 3.897 6 C -0.227 4.227 7 C -0.082 4.082 8 C -0.074 4.074 9 C -0.225 4.225 10 C -0.047 4.047 11 N -0.305 5.305 12 C -0.076 4.076 13 C -0.254 4.254 14 C 0.104 3.896 15 C -0.488 4.488 16 H 0.098 0.902 17 C -0.177 4.177 18 N -0.436 5.436 19 Si 0.795 3.205 20 H -0.184 1.184 21 H -0.187 1.187 22 H -0.185 1.185 23 C -0.100 4.100 24 C -0.218 4.218 25 H 0.056 0.944 26 H 0.080 0.920 27 H 0.095 0.905 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.100 0.900 32 H 0.241 0.759 33 H 0.143 0.857 34 H 0.116 0.884 35 H 0.161 0.839 36 H 0.157 0.843 37 H 0.133 0.867 38 H 0.103 0.897 39 H 0.138 0.862 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -0.523 16.195 1.018 16.235 hybrid contribution -1.456 -0.075 -0.366 1.503 sum -1.979 16.120 0.653 16.254 Atomic orbital electron populations 1.22281 0.96058 1.01443 1.02781 1.20973 0.93629 0.93932 0.88113 1.21987 1.01552 0.93622 1.03663 1.44600 1.73452 1.02110 1.16665 1.17812 0.93876 0.84668 0.93308 1.20609 1.10044 0.93249 0.98756 1.20979 0.96195 0.93773 0.97267 1.18448 1.03317 0.91149 0.94477 1.19898 0.95491 0.93049 1.14085 1.22498 0.95514 0.90753 0.95951 1.67339 1.33385 1.05513 1.24222 1.22003 0.90217 0.98893 0.96509 1.21905 0.99144 0.96418 1.07922 1.18170 0.92260 0.91611 0.87533 1.19647 1.02126 1.03891 1.23121 0.90215 1.26782 1.04250 0.93467 0.93180 1.69803 1.38936 1.16322 1.18500 0.85286 0.76248 0.79212 0.79710 1.18438 1.18714 1.18453 1.21092 0.98543 0.93769 0.96624 1.20595 1.09032 0.93877 0.98325 0.94404 0.92044 0.90503 0.91393 0.91321 0.92107 0.89960 0.75936 0.85650 0.88448 0.83904 0.84350 0.86740 0.89677 0.86220 0.84114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.10 9.40 71.98 0.68 -2.42 16 2 C 0.14 2.55 2.87 44.99 0.13 2.68 16 3 C -0.15 -1.86 9.38 71.98 0.68 -1.19 16 4 N -0.74 -15.92 5.23 -318.80 -1.67 -17.58 16 5 C 0.21 6.13 6.64 38.43 0.26 6.39 16 6 C -0.20 -7.01 8.80 22.37 0.20 -6.81 16 7 C -0.06 -2.65 8.07 22.52 0.18 -2.47 16 8 C -0.07 -3.11 5.00 -20.01 -0.10 -3.21 16 9 C -0.22 -10.97 5.53 -19.49 -0.11 -11.08 16 10 C 0.11 5.24 10.71 85.01 0.91 6.15 16 11 N -0.59 -29.58 10.32 -196.15 -2.02 -31.60 16 12 C 0.07 3.63 11.08 84.21 0.93 4.56 16 13 C -0.23 -12.38 8.72 22.56 0.20 -12.19 16 14 C 0.11 6.07 5.59 -20.92 -0.12 5.95 16 15 C -0.46 -23.98 7.30 23.37 0.17 -23.81 16 16 H 0.08 4.16 6.71 -2.91 -0.02 4.14 16 17 C 0.04 1.99 5.22 85.32 0.45 2.44 16 18 N -0.81 -40.99 10.92 21.86 0.24 -40.75 16 19 Si 0.97 37.28 29.59 68.60 2.03 39.31 16 20 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 21 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 22 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 23 C -0.08 -2.99 9.53 22.52 0.21 -2.77 16 24 C -0.20 -5.94 9.87 22.37 0.22 -5.72 16 25 H 0.04 0.90 7.65 -2.39 -0.02 0.88 16 26 H 0.06 1.05 8.14 -2.38 -0.02 1.04 16 27 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.07 1.41 6.48 -2.39 -0.02 1.39 16 29 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.40 6.95 8.61 -92.71 -0.80 6.15 16 33 H 0.13 3.84 6.05 -2.91 -0.02 3.82 16 34 H 0.10 4.53 7.38 -2.91 -0.02 4.51 16 35 H 0.14 6.00 8.05 -2.91 -0.02 5.98 16 36 H 0.14 6.07 8.06 -2.91 -0.02 6.04 16 37 H 0.11 6.23 6.24 -2.91 -0.02 6.21 16 38 H 0.29 13.28 8.29 -92.71 -0.77 12.51 16 39 H 0.12 4.13 8.05 -2.91 -0.02 4.11 16 40 H 0.14 3.32 8.06 -2.91 -0.02 3.29 16 Total: -1.00 -61.27 331.43 3.71 -57.56 By element: Atomic # 1 Polarization: 36.30 SS G_CDS: 0.25 Total: 36.55 kcal Atomic # 6 Polarization: -48.37 SS G_CDS: 4.88 Total: -43.49 kcal Atomic # 7 Polarization: -86.48 SS G_CDS: -3.45 Total: -89.93 kcal Atomic # 14 Polarization: 37.28 SS G_CDS: 2.03 Total: 39.31 kcal Total: -61.27 3.71 -57.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236487689.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.876 kcal (2) G-P(sol) polarization free energy of solvation -61.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds