Wall clock time and date at job start Tue Mar 31 2020 05:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47471 * 2 1 4 4 N 1.46499 * 109.46923 * 119.99858 * 2 1 3 5 5 C 1.39491 * 120.00201 * 85.00038 * 4 2 1 6 6 C 1.39043 * 119.95614 * 180.02562 * 5 4 2 7 7 C 1.37830 * 120.04809 * 179.97438 * 6 5 4 8 8 C 1.39438 * 119.95068 * 0.02562 * 7 6 5 9 9 C 1.48290 * 120.04445 * 179.97438 * 8 7 6 10 10 C 1.40084 * 120.82874 * 359.97438 * 9 8 7 11 11 C 1.38460 * 119.42384 * 179.97438 * 10 9 8 12 12 N 1.31502 * 121.15190 * 0.02562 * 11 10 9 13 13 C 1.33653 * 121.80314 * 359.97234 * 12 11 10 14 14 C 1.41427 * 119.78016 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00332 * 188.93958 * 14 13 12 16 16 C 1.40037 * 119.99838 * 8.93757 * 14 13 12 17 17 N 1.30742 * 120.00077 * 195.79560 * 16 14 13 18 18 Si 1.86805 * 119.99728 * 15.80356 * 16 14 13 19 19 H 1.48503 * 109.46829 * 269.99465 * 18 16 14 20 20 H 1.48499 * 109.47171 * 29.99622 * 18 16 14 21 21 H 1.48499 * 109.46808 * 149.99908 * 18 16 14 22 22 C 1.39376 * 120.82603 * 180.25518 * 9 8 7 23 23 C 1.39441 * 119.90791 * 0.24940 * 8 7 6 24 24 C 1.37828 * 119.95139 * 359.47205 * 23 8 7 25 25 H 1.08997 * 109.47636 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46980 * 300.00406 * 1 2 3 27 27 H 1.09008 * 109.47204 * 59.99896 * 1 2 3 28 28 H 1.08999 * 109.46980 * 239.99594 * 2 1 3 29 29 H 1.08997 * 109.47176 * 179.97438 * 3 2 1 30 30 H 1.09007 * 109.46755 * 299.99493 * 3 2 1 31 31 H 1.08999 * 109.47350 * 59.99821 * 3 2 1 32 32 H 0.97002 * 120.00373 * 264.99992 * 4 2 1 33 33 H 1.08004 * 119.97760 * 359.97438 * 6 5 4 34 34 H 1.07995 * 120.02162 * 180.02562 * 7 6 5 35 35 H 1.08000 * 120.28438 * 359.95631 * 10 9 8 36 36 H 1.08000 * 119.42277 * 179.97438 * 11 10 9 37 37 H 0.96997 * 119.99686 * 354.80872 * 17 16 14 38 38 H 1.07998 * 120.58364 * 0.02562 * 22 9 8 39 39 H 1.08003 * 120.02112 * 179.72390 * 23 8 7 40 40 H 1.08001 * 119.97100 * 180.25509 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1515 -2.0791 1.1944 6 6 2.6145 -2.7336 2.3304 7 6 2.7463 -4.1056 2.3309 8 6 2.4155 -4.8372 1.1909 9 6 2.5571 -6.3133 1.1890 10 6 3.0223 -6.9913 2.3231 11 6 3.1428 -8.3703 2.2895 12 7 2.8286 -9.0545 1.2113 13 6 2.3803 -8.4564 0.1033 14 6 2.0555 -9.2341 -1.0324 15 1 1.8323 -8.7508 -1.9721 16 6 2.0232 -10.6310 -0.9385 17 7 2.0319 -11.3595 -2.0241 18 14 1.9676 -11.4533 0.7379 19 1 3.3523 -11.7015 1.2136 20 1 1.2647 -10.5677 1.7006 21 1 1.2418 -12.7445 0.6320 22 6 2.2362 -7.0601 0.0568 23 6 1.9568 -4.1783 0.0508 24 6 1.8210 -2.8067 0.0565 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 3.1300 1.4424 0.0005 30 1 1.6768 1.9562 -0.8901 31 1 1.6767 1.9563 0.8899 32 1 2.2490 -0.1823 1.9895 33 1 2.8710 -2.1665 3.2131 34 1 3.1056 -4.6136 3.2137 35 1 3.2850 -6.4432 3.2158 36 1 3.5018 -8.8930 3.1637 37 1 1.9846 -10.9337 -2.8943 38 1 1.8789 -6.5740 -0.8390 39 1 1.7043 -4.7427 -0.8347 40 1 1.4618 -2.2965 -0.8250 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236489510.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:58 Heat of formation + Delta-G solvation = 31.962628 kcal Electronic energy + Delta-G solvation = -20636.115309 eV Core-core repulsion = 17607.143022 eV Total energy + Delta-G solvation = -3028.972286 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.59717 -38.41852 -36.70095 -33.84591 -32.91998 -31.02900 -30.73156 -30.14753 -27.65658 -27.17876 -25.52164 -23.11489 -22.91038 -21.16970 -20.83299 -19.94202 -18.22333 -17.54915 -16.11978 -15.85609 -15.22738 -14.95316 -14.58582 -14.06937 -13.88582 -13.75953 -13.43568 -13.22740 -13.11099 -12.81360 -12.61595 -12.44745 -12.28910 -12.21233 -12.02978 -11.70114 -11.31295 -11.16487 -10.99290 -10.75607 -10.38846 -10.12913 -9.85282 -9.69619 -9.10847 -8.70687 -8.57544 -7.94522 -7.76325 -7.22522 -6.93575 -4.72334 1.47423 1.70146 2.61685 2.90377 3.32630 3.59578 3.67984 3.99053 4.22377 4.43757 4.53459 4.70293 4.76695 4.88566 5.10433 5.16640 5.25269 5.36043 5.37520 5.46672 5.56401 5.59996 5.67083 5.71307 5.73834 5.80235 5.95492 5.99068 6.19046 6.32819 6.40203 6.52632 6.60735 6.64186 6.93522 7.00951 7.09634 7.29621 7.44056 7.47514 7.55739 7.70782 7.78578 8.12364 8.35503 8.68727 9.57119 10.02377 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.032833 B = 0.003389 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.608635 B = 8260.522923 C = 8906.600646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.143 3.857 3 C -0.159 4.159 4 N -0.747 5.747 5 C 0.208 3.792 6 C -0.198 4.198 7 C -0.061 4.061 8 C -0.085 4.085 9 C 0.025 3.975 10 C -0.307 4.307 11 C 0.147 3.853 12 N -0.573 5.573 13 C 0.252 3.748 14 C -0.481 4.481 15 H 0.080 0.920 16 C 0.049 3.951 17 N -0.804 5.804 18 Si 1.144 2.856 19 H -0.285 1.285 20 H -0.280 1.280 21 H -0.328 1.328 22 C -0.251 4.251 23 C -0.061 4.061 24 C -0.199 4.199 25 H 0.061 0.939 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.079 0.921 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.395 0.605 33 H 0.115 0.885 34 H 0.124 0.876 35 H 0.104 0.896 36 H 0.127 0.873 37 H 0.283 0.717 38 H 0.106 0.894 39 H 0.124 0.876 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.941 21.039 5.000 21.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.037 3.963 3 C -0.217 4.217 4 N -0.378 5.378 5 C 0.106 3.894 6 C -0.221 4.221 7 C -0.079 4.079 8 C -0.086 4.086 9 C 0.020 3.980 10 C -0.330 4.330 11 C -0.014 4.014 12 N -0.292 5.292 13 C 0.130 3.870 14 C -0.512 4.512 15 H 0.099 0.901 16 C -0.173 4.173 17 N -0.426 5.426 18 Si 0.977 3.023 19 H -0.212 1.212 20 H -0.207 1.207 21 H -0.261 1.261 22 C -0.273 4.273 23 C -0.080 4.080 24 C -0.221 4.221 25 H 0.080 0.920 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.096 0.904 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.229 0.771 33 H 0.133 0.867 34 H 0.142 0.858 35 H 0.122 0.878 36 H 0.144 0.856 37 H 0.094 0.906 38 H 0.124 0.876 39 H 0.142 0.858 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.912 18.779 5.348 19.547 hybrid contribution 0.014 2.808 -0.690 2.892 sum -0.899 21.587 4.658 22.102 Atomic orbital electron populations 1.22311 0.96033 1.02695 1.01824 1.20848 0.93632 0.92750 0.89030 1.22050 1.01676 0.95397 1.02587 1.44655 1.74030 1.03323 1.15752 1.17804 0.94299 0.83354 0.93977 1.20440 1.09485 0.94652 0.97499 1.21009 0.96572 0.92713 0.97641 1.18779 1.03130 0.92702 0.94028 1.18663 0.95167 0.90207 0.94005 1.21177 1.17663 0.95135 0.99068 1.22028 0.93271 0.91094 0.95027 1.66746 1.21940 1.38929 1.01542 1.18505 0.88276 0.89889 0.90369 1.20703 1.40809 0.93632 0.96088 0.90149 1.27716 0.88247 0.94964 1.06331 1.70626 1.30850 1.40923 1.00199 0.82105 0.77744 0.71163 0.71256 1.21191 1.20692 1.26105 1.21715 1.12699 0.94739 0.98151 1.21102 0.95787 0.93325 0.97778 1.20544 1.09834 0.94051 0.97650 0.91974 0.92551 0.92030 0.90351 0.92057 0.91201 0.92290 0.77084 0.86661 0.85792 0.87789 0.85588 0.90560 0.87645 0.85768 0.86413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.37 9.42 37.16 0.35 -1.02 16 2 C 0.14 1.18 2.87 -67.93 -0.20 0.98 16 3 C -0.16 -0.97 9.38 37.16 0.35 -0.63 16 4 N -0.75 -7.31 5.24 -52.15 -0.27 -7.58 16 5 C 0.21 2.70 6.64 -83.77 -0.56 2.14 16 6 C -0.20 -2.67 9.88 -39.43 -0.39 -3.06 16 7 C -0.06 -0.95 9.44 -39.28 -0.37 -1.33 16 8 C -0.08 -1.55 5.88 -104.87 -0.62 -2.17 16 9 C 0.03 0.55 5.91 -104.65 -0.62 -0.07 16 10 C -0.31 -6.44 9.51 -38.81 -0.37 -6.81 16 11 C 0.15 3.30 11.17 -17.61 -0.20 3.10 16 12 N -0.57 -14.86 5.02 -11.22 -0.06 -14.92 16 13 C 0.25 6.73 6.27 -85.03 -0.53 6.20 16 14 C -0.48 -13.32 9.51 -37.69 -0.36 -13.68 16 15 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 16 C 0.05 1.36 5.51 -17.34 -0.10 1.26 16 17 N -0.80 -22.21 13.65 55.55 0.76 -21.45 16 18 Si 1.14 28.44 25.94 -169.99 -4.41 24.03 16 19 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.28 -6.99 6.54 56.52 0.37 -6.62 16 21 H -0.33 -7.96 7.11 56.52 0.40 -7.56 16 22 C -0.25 -6.01 9.22 -38.33 -0.35 -6.37 16 23 C -0.06 -1.02 9.44 -39.28 -0.37 -1.39 16 24 C -0.20 -2.80 8.82 -39.43 -0.35 -3.15 16 25 H 0.06 0.61 7.69 -51.93 -0.40 0.21 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 28 H 0.08 0.70 6.47 -51.93 -0.34 0.37 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.39 3.21 8.61 -40.82 -0.35 2.86 16 33 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 34 H 0.12 1.81 6.27 -52.49 -0.33 1.48 16 35 H 0.10 1.86 6.31 -52.49 -0.33 1.52 16 36 H 0.13 2.39 8.06 -52.49 -0.42 1.97 16 37 H 0.28 7.47 8.73 -40.82 -0.36 7.12 16 38 H 0.11 2.37 6.32 -52.49 -0.33 2.03 16 39 H 0.12 2.06 6.28 -52.48 -0.33 1.74 16 40 H 0.12 1.44 6.08 -52.49 -0.32 1.12 16 LS Contribution 327.12 15.07 4.93 4.93 Total: -1.00 -29.92 327.12 -9.02 -38.94 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -5.29 Total: 2.04 kcal Atomic # 6 Polarization: -21.32 SS G_CDS: -4.67 Total: -25.99 kcal Atomic # 7 Polarization: -44.38 SS G_CDS: 0.43 Total: -43.95 kcal Atomic # 14 Polarization: 28.44 SS G_CDS: -4.41 Total: 24.03 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.92 -9.02 -38.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236489510.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.900 kcal (2) G-P(sol) polarization free energy of solvation -29.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds