Wall clock time and date at job start Tue Mar 31 2020 05:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46952 * 2 1 4 4 N 1.46494 * 109.47373 * 120.00375 * 2 1 3 5 5 C 1.39238 * 120.00197 * 155.00006 * 4 2 1 6 6 C 1.39230 * 119.92482 * 179.97438 * 5 4 2 7 7 C 1.37645 * 120.07388 * 179.97438 * 6 5 4 8 8 C 1.39856 * 119.92446 * 0.02562 * 7 6 5 9 9 C 1.47636 * 120.07228 * 179.97438 * 8 7 6 10 10 C 1.39790 * 120.66360 * 309.98184 * 9 8 7 11 11 C 1.38311 * 118.47470 * 180.02562 * 10 9 8 12 12 C 1.39097 * 119.74406 * 0.02562 * 11 10 9 13 13 N 1.31265 * 121.36203 * 359.97438 * 12 11 10 14 14 C 1.33732 * 121.63939 * 0.02562 * 13 12 11 15 15 C 1.40723 * 119.95098 * 179.97438 * 14 13 12 16 16 H 1.07994 * 119.99734 * 171.49094 * 15 14 13 17 17 C 1.40104 * 119.99698 * 351.49567 * 15 14 13 18 18 N 1.30718 * 120.00379 * 6.05659 * 17 15 14 19 19 Si 1.86809 * 119.99844 * 186.05562 * 17 15 14 20 20 H 1.48498 * 109.47035 * 94.97920 * 19 17 15 21 21 H 1.48499 * 109.47215 * 214.98290 * 19 17 15 22 22 H 1.48498 * 109.46872 * 334.98075 * 19 17 15 23 23 C 1.39849 * 119.85214 * 0.26071 * 8 7 6 24 24 C 1.37644 * 119.92120 * 359.46419 * 23 8 7 25 25 H 1.08996 * 109.46800 * 299.99795 * 1 2 3 26 26 H 1.08995 * 109.46995 * 59.99778 * 1 2 3 27 27 H 1.08997 * 109.46598 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46800 * 240.00205 * 2 1 3 29 29 H 1.08997 * 109.46688 * 60.00556 * 3 2 1 30 30 H 1.09005 * 109.46728 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.47106 * 299.99997 * 3 2 1 32 32 H 0.97003 * 120.00037 * 334.99947 * 4 2 1 33 33 H 1.07999 * 119.96758 * 359.97438 * 6 5 4 34 34 H 1.08002 * 120.03984 * 180.02562 * 7 6 5 35 35 H 1.08004 * 120.76300 * 0.02562 * 10 9 8 36 36 H 1.07999 * 120.12636 * 180.02562 * 11 10 9 37 37 H 1.07994 * 119.31987 * 180.25972 * 12 11 10 38 38 H 0.97006 * 120.00196 * 179.97438 * 18 17 15 39 39 H 1.08001 * 120.04130 * 179.72019 * 23 8 7 40 40 H 1.08004 * 119.96433 * 180.25101 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 3.2809 -1.2780 1.1942 6 6 3.7436 -1.9335 2.3320 7 6 4.9909 -2.5157 2.3333 8 6 5.7938 -2.4477 1.1902 9 6 7.1324 -3.0705 1.1882 10 6 8.0390 -2.8152 2.2212 11 6 9.2808 -3.4223 2.1736 12 6 9.5977 -4.2631 1.1119 13 7 8.7400 -4.4971 0.1462 14 6 7.5246 -3.9394 0.1371 15 6 6.6332 -4.2146 -0.9165 16 1 5.6085 -3.8787 -0.8584 17 6 7.0752 -4.9243 -2.0407 18 7 8.2791 -5.4332 -2.0607 19 14 5.9440 -5.1435 -3.5111 20 1 6.2216 -4.0820 -4.5117 21 1 6.1808 -6.4754 -4.1237 22 1 4.5304 -5.0474 -3.0667 23 6 5.3283 -1.7833 0.0511 24 6 4.0777 -1.2082 0.0546 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3632 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1301 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.4623 -0.7388 1.9894 33 1 3.1233 -1.9854 3.2145 34 1 5.3492 -3.0244 3.2161 35 1 7.7758 -2.1590 3.0376 36 1 10.0017 -3.2440 2.9578 37 1 10.5678 -4.7369 1.0838 38 1 8.5850 -5.9249 -2.8390 39 1 5.9476 -1.7251 -0.8318 40 1 3.7159 -0.6985 -0.8261 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236489688.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:53 Heat of formation + Delta-G solvation = 49.871811 kcal Electronic energy + Delta-G solvation = -21251.293377 eV Core-core repulsion = 18223.097691 eV Total energy + Delta-G solvation = -3028.195686 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.16193 -37.99681 -36.24538 -33.64922 -32.50973 -30.62445 -30.15895 -29.94214 -27.39265 -26.91235 -25.49687 -22.78664 -22.08480 -21.37064 -20.44499 -19.71470 -17.50755 -17.01883 -15.92018 -15.53797 -15.17078 -14.60458 -14.32366 -14.18068 -13.71493 -13.48976 -13.16214 -12.81906 -12.69282 -12.46641 -12.40027 -12.19324 -11.98242 -11.88486 -11.42958 -11.31954 -11.19618 -11.03802 -11.02544 -10.75042 -10.31173 -10.20116 -9.93790 -9.48640 -9.31413 -8.22707 -8.16642 -7.65117 -7.54968 -6.63259 -6.39782 -4.46606 2.10868 2.16664 2.79811 3.08395 3.11222 3.13108 3.23568 3.66757 3.94200 4.61448 4.75291 4.77183 4.99696 5.13601 5.44164 5.52926 5.56379 5.61912 5.66491 5.79697 5.89649 5.92963 5.96312 6.14473 6.15464 6.18189 6.23845 6.29892 6.48735 6.56888 6.78557 6.86969 6.94576 7.04149 7.17499 7.40364 7.44244 7.47052 7.67816 7.83816 7.89093 8.06987 8.11648 8.28541 8.65899 8.95887 10.10979 10.29474 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.015068 B = 0.005497 C = 0.004256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.855523 B = 5092.824219 C = 6577.555642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.144 3.856 3 C -0.168 4.168 4 N -0.750 5.750 5 C 0.190 3.810 6 C -0.198 4.198 7 C -0.083 4.083 8 C -0.031 4.031 9 C -0.221 4.221 10 C -0.041 4.041 11 C -0.320 4.320 12 C 0.127 3.873 13 N -0.484 5.484 14 C 0.267 3.733 15 C -0.422 4.422 16 H 0.093 0.907 17 C 0.069 3.931 18 N -0.713 5.713 19 Si 0.901 3.099 20 H -0.268 1.268 21 H -0.276 1.276 22 H -0.259 1.259 23 C -0.059 4.059 24 C -0.198 4.198 25 H 0.056 0.944 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.078 0.922 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.392 0.608 33 H 0.107 0.893 34 H 0.112 0.888 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.117 0.883 38 H 0.273 0.727 39 H 0.125 0.875 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.305 8.409 2.344 14.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.039 3.961 3 C -0.227 4.227 4 N -0.382 5.382 5 C 0.089 3.911 6 C -0.220 4.220 7 C -0.102 4.102 8 C -0.033 4.033 9 C -0.226 4.226 10 C -0.065 4.065 11 C -0.343 4.343 12 C -0.041 4.041 13 N -0.196 5.196 14 C 0.144 3.856 15 C -0.452 4.452 16 H 0.111 0.889 17 C -0.157 4.157 18 N -0.333 5.333 19 Si 0.725 3.275 20 H -0.193 1.193 21 H -0.201 1.201 22 H -0.183 1.183 23 C -0.078 4.078 24 C -0.220 4.220 25 H 0.075 0.925 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.096 0.904 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.225 0.775 33 H 0.125 0.875 34 H 0.130 0.870 35 H 0.113 0.887 36 H 0.111 0.889 37 H 0.134 0.866 38 H 0.084 0.916 39 H 0.143 0.857 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -10.998 7.792 1.291 13.540 hybrid contribution -0.790 0.426 0.452 1.005 sum -11.788 8.218 1.743 14.475 Atomic orbital electron populations 1.22046 0.94947 1.02355 1.02297 1.20787 0.93489 0.92458 0.89404 1.22306 1.02293 0.96669 1.01459 1.44470 1.16216 1.62091 1.15405 1.17726 0.85427 0.93772 0.94167 1.20309 0.98059 1.06453 0.97173 1.20985 0.93029 0.98357 0.97832 1.18508 0.94046 0.97840 0.92941 1.19384 0.94563 1.07923 1.00701 1.20898 0.93334 0.96511 0.95737 1.21204 0.98821 1.10637 1.03676 1.22572 0.97739 0.93540 0.90241 1.68754 1.02802 1.24209 1.23808 1.18564 0.89438 0.87500 0.90144 1.19712 0.97687 1.28456 0.99356 0.88934 1.26125 0.95312 0.94145 1.00073 1.70136 1.15802 1.20027 1.27366 0.86396 0.81537 0.78486 0.81074 1.19349 1.20057 1.18265 1.21177 0.94389 0.94103 0.98087 1.20525 0.96087 1.08241 0.97193 0.92467 0.91430 0.92121 0.90411 0.92762 0.91964 0.92318 0.77468 0.87466 0.87017 0.88703 0.88901 0.86572 0.91587 0.85677 0.87027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.31 9.38 37.16 0.35 -0.96 16 2 C 0.14 1.55 2.87 -67.93 -0.20 1.35 16 3 C -0.17 -1.70 9.41 37.16 0.35 -1.35 16 4 N -0.75 -9.38 5.23 -52.11 -0.27 -9.65 16 5 C 0.19 3.05 6.64 -83.76 -0.56 2.49 16 6 C -0.20 -3.28 9.87 -39.43 -0.39 -3.67 16 7 C -0.08 -1.59 9.54 -39.19 -0.37 -1.96 16 8 C -0.03 -0.67 4.98 -104.85 -0.52 -1.19 16 9 C -0.22 -5.40 5.53 -104.08 -0.58 -5.97 16 10 C -0.04 -0.92 9.66 -38.97 -0.38 -1.30 16 11 C -0.32 -7.26 10.10 -39.24 -0.40 -7.66 16 12 C 0.13 3.11 11.17 -17.48 -0.20 2.91 16 13 N -0.48 -13.41 7.89 -10.90 -0.09 -13.49 16 14 C 0.27 7.26 6.54 -84.70 -0.55 6.70 16 15 C -0.42 -11.14 7.75 -37.94 -0.29 -11.43 16 16 H 0.09 2.35 5.63 -52.49 -0.30 2.06 16 17 C 0.07 1.76 5.49 -17.33 -0.10 1.66 16 18 N -0.71 -18.89 11.50 55.56 0.64 -18.25 16 19 Si 0.90 18.64 29.57 -169.99 -5.03 13.61 16 20 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 21 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 22 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 23 C -0.06 -1.20 7.64 -39.20 -0.30 -1.50 16 24 C -0.20 -3.46 8.81 -39.43 -0.35 -3.81 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.08 0.92 6.46 -51.93 -0.34 0.58 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.74 7.68 -51.93 -0.40 0.34 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.39 4.21 8.61 -40.82 -0.35 3.86 16 33 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 34 H 0.11 2.03 8.05 -52.49 -0.42 1.61 16 35 H 0.09 1.92 8.06 -52.48 -0.42 1.50 16 36 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 37 H 0.12 2.52 8.06 -52.49 -0.42 2.10 16 38 H 0.27 6.55 8.29 -40.82 -0.34 6.21 16 39 H 0.13 2.66 7.32 -52.49 -0.38 2.27 16 40 H 0.11 1.73 6.07 -52.48 -0.32 1.41 16 LS Contribution 331.94 15.07 5.00 5.00 Total: -1.00 -29.18 331.94 -9.66 -38.84 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -5.45 Total: 9.65 kcal Atomic # 6 Polarization: -21.23 SS G_CDS: -4.47 Total: -25.70 kcal Atomic # 7 Polarization: -41.68 SS G_CDS: 0.28 Total: -41.40 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.61 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.18 -9.66 -38.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236489688.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.709 kcal (2) G-P(sol) polarization free energy of solvation -29.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds