Wall clock time and date at job start Tue Mar 31 2020 05:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46952 * 2 1 4 4 N 1.46494 * 109.47373 * 120.00375 * 2 1 3 5 5 C 1.39238 * 120.00197 * 155.00006 * 4 2 1 6 6 C 1.39230 * 119.92482 * 179.97438 * 5 4 2 7 7 C 1.37645 * 120.07388 * 179.97438 * 6 5 4 8 8 C 1.39856 * 119.92446 * 0.02562 * 7 6 5 9 9 C 1.47636 * 120.07228 * 179.97438 * 8 7 6 10 10 C 1.39790 * 120.66360 * 309.98184 * 9 8 7 11 11 C 1.38311 * 118.47470 * 180.02562 * 10 9 8 12 12 C 1.39097 * 119.74406 * 0.02562 * 11 10 9 13 13 N 1.31265 * 121.36203 * 359.97438 * 12 11 10 14 14 C 1.33732 * 121.63939 * 0.02562 * 13 12 11 15 15 C 1.40723 * 119.95098 * 179.97438 * 14 13 12 16 16 H 1.07994 * 119.99734 * 171.49094 * 15 14 13 17 17 C 1.40104 * 119.99698 * 351.49567 * 15 14 13 18 18 N 1.30718 * 120.00379 * 6.05659 * 17 15 14 19 19 Si 1.86809 * 119.99844 * 186.05562 * 17 15 14 20 20 H 1.48498 * 109.47035 * 94.97920 * 19 17 15 21 21 H 1.48499 * 109.47215 * 214.98290 * 19 17 15 22 22 H 1.48498 * 109.46872 * 334.98075 * 19 17 15 23 23 C 1.39849 * 119.85214 * 0.26071 * 8 7 6 24 24 C 1.37644 * 119.92120 * 359.46419 * 23 8 7 25 25 H 1.08996 * 109.46800 * 299.99795 * 1 2 3 26 26 H 1.08995 * 109.46995 * 59.99778 * 1 2 3 27 27 H 1.08997 * 109.46598 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46800 * 240.00205 * 2 1 3 29 29 H 1.08997 * 109.46688 * 60.00556 * 3 2 1 30 30 H 1.09005 * 109.46728 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.47106 * 299.99997 * 3 2 1 32 32 H 0.97003 * 120.00037 * 334.99947 * 4 2 1 33 33 H 1.07999 * 119.96758 * 359.97438 * 6 5 4 34 34 H 1.08002 * 120.03984 * 180.02562 * 7 6 5 35 35 H 1.08004 * 120.76300 * 0.02562 * 10 9 8 36 36 H 1.07999 * 120.12636 * 180.02562 * 11 10 9 37 37 H 1.07994 * 119.31987 * 180.25972 * 12 11 10 38 38 H 0.97006 * 120.00196 * 179.97438 * 18 17 15 39 39 H 1.08001 * 120.04130 * 179.72019 * 23 8 7 40 40 H 1.08004 * 119.96433 * 180.25101 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 3.2809 -1.2780 1.1942 6 6 3.7436 -1.9335 2.3320 7 6 4.9909 -2.5157 2.3333 8 6 5.7938 -2.4477 1.1902 9 6 7.1324 -3.0705 1.1882 10 6 8.0390 -2.8152 2.2212 11 6 9.2808 -3.4223 2.1736 12 6 9.5977 -4.2631 1.1119 13 7 8.7400 -4.4971 0.1462 14 6 7.5246 -3.9394 0.1371 15 6 6.6332 -4.2146 -0.9165 16 1 5.6085 -3.8787 -0.8584 17 6 7.0752 -4.9243 -2.0407 18 7 8.2791 -5.4332 -2.0607 19 14 5.9440 -5.1435 -3.5111 20 1 6.2216 -4.0820 -4.5117 21 1 6.1808 -6.4754 -4.1237 22 1 4.5304 -5.0474 -3.0667 23 6 5.3283 -1.7833 0.0511 24 6 4.0777 -1.2082 0.0546 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3632 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1301 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.4623 -0.7388 1.9894 33 1 3.1233 -1.9854 3.2145 34 1 5.3492 -3.0244 3.2161 35 1 7.7758 -2.1590 3.0376 36 1 10.0017 -3.2440 2.9578 37 1 10.5678 -4.7369 1.0838 38 1 8.5850 -5.9249 -2.8390 39 1 5.9476 -1.7251 -0.8318 40 1 3.7159 -0.6985 -0.8261 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236489688.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:53 Heat of formation + Delta-G solvation = 34.637439 kcal Electronic energy + Delta-G solvation = -21251.953989 eV Core-core repulsion = 18223.097691 eV Total energy + Delta-G solvation = -3028.856298 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.63303 -39.63048 -37.43896 -35.52343 -33.85882 -32.33143 -31.62150 -31.53217 -28.58018 -28.01715 -27.26444 -24.19904 -23.64055 -23.06966 -21.84592 -21.03553 -19.36662 -18.29606 -17.55324 -16.87040 -16.66781 -16.08228 -15.98267 -15.55282 -14.90157 -14.86802 -14.50679 -14.35760 -13.99566 -13.95274 -13.88228 -13.39962 -13.25421 -13.00273 -12.92541 -12.82560 -12.67336 -12.53159 -12.27408 -11.97228 -11.90313 -11.67146 -11.48757 -11.21249 -10.83426 -9.99325 -9.66656 -9.46559 -9.44055 -8.31793 -7.95786 -6.39436 0.52866 0.72743 1.02791 1.36856 1.37745 1.51600 1.52781 2.21745 2.62912 2.85896 3.15965 3.95055 3.99042 4.17291 4.21335 4.23578 4.26047 4.39039 4.40788 4.58557 4.70350 4.72974 4.78691 4.82285 4.92221 4.94413 4.99740 5.04238 5.16849 5.23307 5.27530 5.36457 5.39773 5.43796 5.53440 5.69874 5.76856 5.90562 6.10832 6.15655 6.26060 6.36240 6.61372 6.76893 7.02188 7.04646 8.21676 8.45412 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.015068 B = 0.005497 C = 0.004256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.855523 B = 5092.824219 C = 6577.555642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.137 3.863 3 C -0.164 4.164 4 N -0.737 5.737 5 C 0.205 3.795 6 C -0.196 4.196 7 C -0.084 4.084 8 C -0.070 4.070 9 C -0.223 4.223 10 C -0.053 4.053 11 C -0.311 4.311 12 C 0.101 3.899 13 N -0.523 5.523 14 C 0.233 3.767 15 C -0.449 4.449 16 H 0.092 0.908 17 C 0.025 3.975 18 N -0.755 5.755 19 Si 0.975 3.025 20 H -0.261 1.261 21 H -0.267 1.267 22 H -0.256 1.256 23 C -0.070 4.070 24 C -0.203 4.203 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.040 0.960 31 H 0.076 0.924 32 H 0.404 0.596 33 H 0.140 0.860 34 H 0.117 0.883 35 H 0.122 0.878 36 H 0.126 0.874 37 H 0.135 0.865 38 H 0.278 0.722 39 H 0.102 0.898 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.123 9.866 3.041 17.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.032 3.968 3 C -0.223 4.223 4 N -0.368 5.368 5 C 0.102 3.898 6 C -0.218 4.218 7 C -0.103 4.103 8 C -0.073 4.073 9 C -0.228 4.228 10 C -0.077 4.077 11 C -0.333 4.333 12 C -0.065 4.065 13 N -0.235 5.235 14 C 0.109 3.891 15 C -0.480 4.480 16 H 0.110 0.890 17 C -0.196 4.196 18 N -0.377 5.377 19 Si 0.795 3.205 20 H -0.185 1.185 21 H -0.191 1.191 22 H -0.180 1.180 23 C -0.089 4.089 24 C -0.225 4.225 25 H 0.088 0.912 26 H 0.101 0.899 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.059 0.941 31 H 0.095 0.905 32 H 0.240 0.760 33 H 0.158 0.842 34 H 0.135 0.865 35 H 0.140 0.860 36 H 0.144 0.856 37 H 0.153 0.847 38 H 0.089 0.911 39 H 0.120 0.880 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -13.833 9.275 2.019 16.776 hybrid contribution -0.001 0.116 0.376 0.393 sum -13.833 9.391 2.395 16.890 Atomic orbital electron populations 1.21993 0.92569 1.02639 1.03714 1.20990 0.95339 0.92413 0.88054 1.22257 1.00859 0.96380 1.02798 1.44588 1.14779 1.60813 1.16659 1.17805 0.86348 0.92389 0.93275 1.20588 0.97368 1.05432 0.98435 1.21069 0.93780 0.98432 0.97010 1.18500 0.93823 1.00253 0.94700 1.19751 0.96243 1.06739 1.00018 1.21265 0.93161 0.96932 0.96316 1.21551 0.99335 1.08972 1.03488 1.22994 0.98328 0.94579 0.90572 1.68674 1.03711 1.25699 1.25461 1.19019 0.89822 0.88641 0.91617 1.19903 0.97790 1.29898 1.00406 0.88994 1.26989 0.96755 0.93311 1.02591 1.70232 1.17667 1.21254 1.28547 0.85304 0.79211 0.78779 0.77219 1.18533 1.19126 1.17974 1.21033 0.95471 0.95288 0.97079 1.20628 0.95201 1.08124 0.98559 0.91211 0.89909 0.92405 0.91573 0.91978 0.94095 0.90513 0.75975 0.84210 0.86485 0.85982 0.85644 0.84716 0.91117 0.87972 0.85414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.38 71.98 0.68 -1.26 16 2 C 0.14 2.52 2.87 45.00 0.13 2.65 16 3 C -0.16 -2.84 9.41 71.98 0.68 -2.16 16 4 N -0.74 -16.02 5.23 -318.79 -1.67 -17.69 16 5 C 0.21 6.13 6.64 38.44 0.26 6.38 16 6 C -0.20 -6.02 9.87 22.37 0.22 -5.80 16 7 C -0.08 -3.14 9.54 22.52 0.21 -2.92 16 8 C -0.07 -3.09 4.98 -20.01 -0.10 -3.19 16 9 C -0.22 -11.22 5.53 -19.51 -0.11 -11.33 16 10 C -0.05 -2.40 9.66 22.66 0.22 -2.18 16 11 C -0.31 -14.00 10.10 22.49 0.23 -13.77 16 12 C 0.10 5.06 11.17 84.98 0.95 6.01 16 13 N -0.52 -30.25 7.89 -188.39 -1.49 -31.74 16 14 C 0.23 13.27 6.54 40.37 0.26 13.53 16 15 C -0.45 -24.86 7.75 23.33 0.18 -24.68 16 16 H 0.09 4.90 5.63 -2.91 -0.02 4.89 16 17 C 0.03 1.33 5.49 85.31 0.47 1.80 16 18 N -0.75 -41.79 11.50 21.85 0.25 -41.54 16 19 Si 0.97 39.29 29.57 68.60 2.03 41.32 16 20 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 21 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 22 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 23 C -0.07 -2.92 7.64 22.52 0.17 -2.74 16 24 C -0.20 -6.94 8.81 22.37 0.20 -6.74 16 25 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.06 0.79 8.14 -2.39 -0.02 0.78 16 28 H 0.07 1.40 6.46 -2.39 -0.02 1.39 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.04 0.89 7.68 -2.38 -0.02 0.87 16 31 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.40 7.02 8.61 -92.71 -0.80 6.23 16 33 H 0.14 3.36 8.06 -2.91 -0.02 3.34 16 34 H 0.12 4.13 8.05 -2.91 -0.02 4.11 16 35 H 0.12 4.79 8.06 -2.91 -0.02 4.77 16 36 H 0.13 4.73 8.06 -2.91 -0.02 4.71 16 37 H 0.14 5.98 8.06 -2.91 -0.02 5.96 16 38 H 0.28 13.91 8.29 -92.70 -0.77 13.14 16 39 H 0.10 4.62 7.32 -2.91 -0.02 4.60 16 40 H 0.13 3.85 6.07 -2.91 -0.02 3.83 16 Total: -1.00 -66.18 331.94 4.02 -62.16 By element: Atomic # 1 Polarization: 33.66 SS G_CDS: 0.25 Total: 33.91 kcal Atomic # 6 Polarization: -51.06 SS G_CDS: 4.64 Total: -46.42 kcal Atomic # 7 Polarization: -88.06 SS G_CDS: -2.90 Total: -90.97 kcal Atomic # 14 Polarization: 39.29 SS G_CDS: 2.03 Total: 41.32 kcal Total: -66.18 4.02 -62.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236489688.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.797 kcal (2) G-P(sol) polarization free energy of solvation -66.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds