Wall clock time and date at job start Tue Mar 31 2020 06:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42901 * 109.47297 * 2 1 4 4 C 1.35733 * 116.99845 * 179.97438 * 3 2 1 5 5 N 1.32215 * 119.69599 * 359.72966 * 4 3 2 6 6 C 1.31966 * 121.67128 * 179.75072 * 5 4 3 7 7 C 1.38062 * 120.87390 * 0.52713 * 6 5 4 8 8 C 1.50705 * 120.34466 * 179.76638 * 7 6 5 9 9 N 1.46904 * 109.47213 * 269.97642 * 8 7 6 10 10 C 1.46900 * 111.00015 * 66.04156 * 9 8 7 11 11 C 1.53008 * 109.46937 * 62.58797 * 10 9 8 12 12 C 1.46889 * 111.00208 * 189.99974 * 9 8 7 13 13 C 1.50703 * 109.47267 * 164.73231 * 12 9 8 14 14 H 1.08004 * 119.99897 * 0.33864 * 13 12 9 15 15 C 1.37880 * 120.00216 * 180.34870 * 13 12 9 16 16 N 1.31515 * 119.99737 * 179.97438 * 15 13 12 17 17 Si 1.86795 * 119.99898 * 359.97438 * 15 13 12 18 18 H 1.48505 * 109.47198 * 89.99988 * 17 15 13 19 19 H 1.48500 * 109.47331 * 209.99918 * 17 15 13 20 20 H 1.48496 * 109.47461 * 330.00513 * 17 15 13 21 21 C 1.38793 * 119.31166 * 359.74029 * 7 6 5 22 22 C 1.38572 * 118.46022 * 0.02562 * 21 7 6 23 23 F 1.35104 * 120.46194 * 180.02562 * 22 21 7 24 24 H 1.09004 * 109.47613 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47045 * 299.99806 * 1 2 3 26 26 H 1.09003 * 109.47402 * 59.99299 * 1 2 3 27 27 H 1.09003 * 109.47402 * 120.00701 * 2 1 3 28 28 H 1.09004 * 109.46758 * 240.00561 * 2 1 3 29 29 H 1.07999 * 119.56348 * 180.26623 * 6 5 4 30 30 H 1.08996 * 109.47385 * 29.97320 * 8 7 6 31 31 H 1.09000 * 109.47359 * 149.97471 * 8 7 6 32 32 H 1.08995 * 109.47246 * 182.58621 * 10 9 8 33 33 H 1.08998 * 109.47278 * 302.59213 * 10 9 8 34 34 H 1.08992 * 109.46985 * 182.63037 * 11 10 9 35 35 H 1.09003 * 109.47103 * 302.63403 * 11 10 9 36 36 H 1.08998 * 109.46764 * 62.63448 * 11 10 9 37 37 H 1.08996 * 109.47442 * 284.72825 * 12 9 8 38 38 H 1.09000 * 109.47303 * 44.73130 * 12 9 8 39 39 H 0.97000 * 119.99620 * 179.97438 * 16 15 13 40 40 H 1.07999 * 120.76984 * 180.02562 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3520 1.5250 0.0005 5 7 4.1517 0.4722 0.0065 6 6 5.4652 0.5998 0.0023 7 6 6.0558 1.8478 0.0025 8 6 7.5570 1.9796 0.0030 9 7 8.0443 2.0231 1.3882 10 6 7.8054 0.7444 2.0707 11 6 8.5899 -0.3642 1.3658 12 6 9.4666 2.3871 1.4348 13 6 9.8372 2.7863 2.8399 14 1 9.0921 2.7659 3.6214 15 6 11.1276 3.1779 3.1277 16 7 11.4508 3.5267 4.3539 17 14 12.4165 3.2127 1.7762 18 1 12.4196 4.5496 1.1295 19 1 13.7545 2.9427 2.3610 20 1 12.1000 2.1738 0.7634 21 6 5.2525 2.9796 0.0016 22 6 3.8768 2.8131 0.0011 23 9 3.0569 3.8869 -0.0003 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5139 0.8899 28 1 1.8932 -0.5138 -0.8901 29 1 6.0864 -0.2836 0.0030 30 1 7.9971 1.1246 -0.5102 31 1 7.8413 2.8977 -0.5111 32 1 8.1337 0.8189 3.1074 33 1 6.7412 0.5106 2.0424 34 1 8.3762 -1.3204 1.8432 35 1 8.2951 -0.4076 0.3173 36 1 9.6572 -0.1542 1.4348 37 1 10.0705 1.5329 1.1286 38 1 9.6502 3.2226 0.7593 39 1 12.3586 3.8018 4.5564 40 1 5.6895 3.9673 0.0013 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236692201.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:32 Heat of formation + Delta-G solvation = -40.714556 kcal Electronic energy + Delta-G solvation = -22125.897910 eV Core-core repulsion = 18663.004880 eV Total energy + Delta-G solvation = -3462.893030 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.82912 -40.67943 -38.62648 -37.12406 -33.00835 -32.38643 -32.10461 -30.46296 -29.76880 -27.54572 -25.15237 -24.54833 -23.10868 -22.59280 -21.76555 -19.38845 -18.68994 -17.67603 -17.02358 -16.69951 -16.61885 -15.46974 -15.31754 -15.19093 -14.94064 -14.27954 -14.14236 -13.69800 -13.62324 -13.27259 -13.11708 -12.77873 -12.60541 -12.52159 -12.33618 -12.08397 -11.73116 -11.65642 -11.38684 -11.17007 -10.87639 -10.67109 -10.52774 -10.22750 -9.98524 -9.76930 -9.66262 -9.33909 -8.59599 -8.36330 -7.41671 -6.07581 -4.04809 0.90659 1.09433 2.76044 3.24996 3.32829 3.33286 3.52437 4.00366 4.24491 4.38427 4.58829 4.78307 4.78865 4.87497 4.90103 5.06121 5.16968 5.24636 5.34951 5.48779 5.52972 5.59560 5.60657 5.72369 5.78054 5.79988 5.91506 5.96002 6.18795 6.29101 6.35905 6.42942 6.70135 6.85697 6.98010 7.07509 7.55125 7.62056 7.81206 7.94822 8.61919 9.02269 9.53669 11.05704 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.029956 B = 0.003673 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.471851 B = 7620.966542 C = 7966.486653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.066 3.934 3 O -0.304 6.304 4 C 0.287 3.713 5 N -0.515 5.515 6 C 0.132 3.868 7 C -0.120 4.120 8 C 0.089 3.911 9 N -0.520 5.520 10 C 0.055 3.945 11 C -0.192 4.192 12 C 0.158 3.842 13 C -0.506 4.506 14 H 0.080 0.920 15 C 0.068 3.932 16 N -0.900 5.900 17 Si 0.873 3.127 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.268 1.268 21 C -0.055 4.055 22 C 0.030 3.970 23 F -0.127 7.127 24 H 0.078 0.922 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.164 0.836 30 H 0.046 0.954 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.056 0.944 34 H 0.053 0.947 35 H 0.046 0.954 36 H 0.066 0.934 37 H 0.000 1.000 38 H 0.022 0.978 39 H 0.263 0.737 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.800 -7.484 -11.489 20.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.009 4.009 3 O -0.211 6.211 4 C 0.107 3.893 5 N -0.238 5.238 6 C -0.024 4.024 7 C -0.122 4.122 8 C -0.040 4.040 9 N -0.243 5.243 10 C -0.073 4.073 11 C -0.251 4.251 12 C 0.032 3.968 13 C -0.545 4.545 14 H 0.098 0.902 15 C -0.133 4.133 16 N -0.539 5.539 17 Si 0.701 3.299 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.193 1.193 21 C -0.082 4.082 22 C 0.008 3.992 23 F -0.106 7.106 24 H 0.097 0.903 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.181 0.819 30 H 0.064 0.936 31 H 0.101 0.899 32 H 0.106 0.894 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.085 0.915 37 H 0.017 0.983 38 H 0.040 0.960 39 H 0.073 0.927 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -16.541 -7.653 -11.114 21.347 hybrid contribution 1.565 0.244 -0.976 1.860 sum -14.976 -7.408 -12.090 20.624 Atomic orbital electron populations 1.21819 0.93018 1.02830 1.03367 1.22618 0.94706 0.80931 1.02616 1.86278 1.16094 1.30801 1.87968 1.19760 0.84919 0.88767 0.95878 1.67417 1.06540 1.31233 1.18593 1.22428 0.88660 0.97377 0.93942 1.20686 0.97826 0.92480 1.01254 1.21022 0.88266 1.01812 0.92878 1.62244 1.21218 1.29621 1.11179 1.22071 0.98091 0.87049 1.00095 1.22438 1.02833 0.99743 1.00075 1.20275 0.82849 0.94855 0.98819 1.20996 0.96092 1.44073 0.93304 0.90185 1.24893 0.98184 0.95030 0.95228 1.69891 1.19567 1.45642 1.18804 0.86898 0.81502 0.78879 0.82666 1.20177 1.21245 1.19269 1.21459 0.89744 1.01434 0.95561 1.17615 0.88504 0.81665 1.11401 1.91511 1.71690 1.53004 1.94348 0.90274 0.91582 0.91694 0.91439 0.91594 0.81925 0.93604 0.89934 0.89447 0.92562 0.92826 0.93492 0.91459 0.98282 0.95969 0.92655 0.82560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 10.28 37.15 0.38 -0.77 16 2 C 0.07 0.68 6.03 37.15 0.22 0.90 16 3 O -0.30 -4.12 9.99 -18.91 -0.19 -4.31 16 4 C 0.29 4.15 7.50 -17.07 -0.13 4.02 16 5 N -0.52 -7.13 9.22 -13.28 -0.12 -7.25 16 6 C 0.13 1.73 9.09 -17.56 -0.16 1.57 16 7 C -0.12 -1.66 4.90 -104.48 -0.51 -2.17 16 8 C 0.09 1.34 4.93 -4.97 -0.02 1.31 16 9 N -0.52 -9.94 4.65 -237.52 -1.11 -11.04 16 10 C 0.06 0.97 5.56 -3.82 -0.02 0.95 16 11 C -0.19 -2.94 9.14 37.16 0.34 -2.60 16 12 C 0.16 3.56 3.64 -4.98 -0.02 3.54 16 13 C -0.51 -13.84 9.12 -34.44 -0.31 -14.15 16 14 H 0.08 2.42 7.70 -52.48 -0.40 2.01 16 15 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 16 N -0.90 -27.11 13.96 55.43 0.77 -26.34 16 17 Si 0.87 20.79 27.46 -169.99 -4.67 16.12 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.27 -6.06 6.55 56.52 0.37 -5.69 16 21 C -0.06 -0.77 9.84 -39.25 -0.39 -1.15 16 22 C 0.03 0.44 7.35 -39.14 -0.29 0.15 16 23 F -0.13 -1.89 17.13 2.25 0.04 -1.86 16 24 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 28 H 0.07 0.64 8.11 -51.93 -0.42 0.22 16 29 H 0.16 1.84 7.27 -52.49 -0.38 1.46 16 30 H 0.05 0.64 5.98 -51.93 -0.31 0.32 16 31 H 0.08 1.20 7.82 -51.93 -0.41 0.79 16 32 H 0.09 1.77 7.19 -51.93 -0.37 1.40 16 33 H 0.06 0.90 5.99 -51.93 -0.31 0.59 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.05 0.62 5.61 -51.93 -0.29 0.33 16 36 H 0.07 1.18 6.34 -51.93 -0.33 0.85 16 37 H 0.00 -0.01 4.96 -51.93 -0.26 -0.27 16 38 H 0.02 0.50 7.23 -51.93 -0.38 0.13 16 39 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 40 H 0.16 1.97 8.06 -52.49 -0.42 1.55 16 LS Contribution 327.27 15.07 4.93 4.93 Total: -1.00 -30.42 327.27 -6.91 -37.33 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -5.56 Total: -1.00 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: -1.00 Total: -6.58 kcal Atomic # 7 Polarization: -44.18 SS G_CDS: -0.45 Total: -44.63 kcal Atomic # 8 Polarization: -4.12 SS G_CDS: -0.19 Total: -4.31 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.04 Total: -1.86 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.67 Total: 16.12 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.42 -6.91 -37.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236692201.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.387 kcal (2) G-P(sol) polarization free energy of solvation -30.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds