Wall clock time and date at job start Tue Mar 31 2020 06:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42901 * 109.47297 * 2 1 4 4 C 1.35733 * 116.99845 * 179.97438 * 3 2 1 5 5 N 1.32215 * 119.69599 * 359.72966 * 4 3 2 6 6 C 1.31966 * 121.67128 * 179.75072 * 5 4 3 7 7 C 1.38062 * 120.87390 * 0.52713 * 6 5 4 8 8 C 1.50705 * 120.34466 * 179.76638 * 7 6 5 9 9 N 1.46904 * 109.47213 * 269.97642 * 8 7 6 10 10 C 1.46900 * 111.00015 * 66.04156 * 9 8 7 11 11 C 1.53008 * 109.46937 * 62.58797 * 10 9 8 12 12 C 1.46889 * 111.00208 * 189.99974 * 9 8 7 13 13 C 1.50703 * 109.47267 * 164.73231 * 12 9 8 14 14 H 1.08004 * 119.99897 * 0.33864 * 13 12 9 15 15 C 1.37880 * 120.00216 * 180.34870 * 13 12 9 16 16 N 1.31515 * 119.99737 * 179.97438 * 15 13 12 17 17 Si 1.86795 * 119.99898 * 359.97438 * 15 13 12 18 18 H 1.48505 * 109.47198 * 89.99988 * 17 15 13 19 19 H 1.48500 * 109.47331 * 209.99918 * 17 15 13 20 20 H 1.48496 * 109.47461 * 330.00513 * 17 15 13 21 21 C 1.38793 * 119.31166 * 359.74029 * 7 6 5 22 22 C 1.38572 * 118.46022 * 0.02562 * 21 7 6 23 23 F 1.35104 * 120.46194 * 180.02562 * 22 21 7 24 24 H 1.09004 * 109.47613 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47045 * 299.99806 * 1 2 3 26 26 H 1.09003 * 109.47402 * 59.99299 * 1 2 3 27 27 H 1.09003 * 109.47402 * 120.00701 * 2 1 3 28 28 H 1.09004 * 109.46758 * 240.00561 * 2 1 3 29 29 H 1.07999 * 119.56348 * 180.26623 * 6 5 4 30 30 H 1.08996 * 109.47385 * 29.97320 * 8 7 6 31 31 H 1.09000 * 109.47359 * 149.97471 * 8 7 6 32 32 H 1.08995 * 109.47246 * 182.58621 * 10 9 8 33 33 H 1.08998 * 109.47278 * 302.59213 * 10 9 8 34 34 H 1.08992 * 109.46985 * 182.63037 * 11 10 9 35 35 H 1.09003 * 109.47103 * 302.63403 * 11 10 9 36 36 H 1.08998 * 109.46764 * 62.63448 * 11 10 9 37 37 H 1.08996 * 109.47442 * 284.72825 * 12 9 8 38 38 H 1.09000 * 109.47303 * 44.73130 * 12 9 8 39 39 H 0.97000 * 119.99620 * 179.97438 * 16 15 13 40 40 H 1.07999 * 120.76984 * 180.02562 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3520 1.5250 0.0005 5 7 4.1517 0.4722 0.0065 6 6 5.4652 0.5998 0.0023 7 6 6.0558 1.8478 0.0025 8 6 7.5570 1.9796 0.0030 9 7 8.0443 2.0231 1.3882 10 6 7.8054 0.7444 2.0707 11 6 8.5899 -0.3642 1.3658 12 6 9.4666 2.3871 1.4348 13 6 9.8372 2.7863 2.8399 14 1 9.0921 2.7659 3.6214 15 6 11.1276 3.1779 3.1277 16 7 11.4508 3.5267 4.3539 17 14 12.4165 3.2127 1.7762 18 1 12.4196 4.5496 1.1295 19 1 13.7545 2.9427 2.3610 20 1 12.1000 2.1738 0.7634 21 6 5.2525 2.9796 0.0016 22 6 3.8768 2.8131 0.0011 23 9 3.0569 3.8869 -0.0003 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5139 0.8899 28 1 1.8932 -0.5138 -0.8901 29 1 6.0864 -0.2836 0.0030 30 1 7.9971 1.1246 -0.5102 31 1 7.8413 2.8977 -0.5111 32 1 8.1337 0.8189 3.1074 33 1 6.7412 0.5106 2.0424 34 1 8.3762 -1.3204 1.8432 35 1 8.2951 -0.4076 0.3173 36 1 9.6572 -0.1542 1.4348 37 1 10.0705 1.5329 1.1286 38 1 9.6502 3.2226 0.7593 39 1 12.3586 3.8018 4.5564 40 1 5.6895 3.9673 0.0013 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236692201.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:32 Heat of formation + Delta-G solvation = -62.269915 kcal Electronic energy + Delta-G solvation = -22126.832621 eV Core-core repulsion = 18663.004880 eV Total energy + Delta-G solvation = -3463.827741 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.95610 -41.73993 -39.74610 -38.43766 -34.78074 -33.77787 -32.96828 -31.53460 -31.28971 -29.13081 -26.44324 -25.53809 -24.65660 -23.52230 -23.07396 -20.88064 -19.68707 -18.88028 -18.74431 -17.97706 -17.67974 -16.70941 -16.64280 -16.39220 -16.24417 -15.98105 -15.23650 -14.89783 -14.67264 -14.53544 -14.42360 -14.12797 -13.88557 -13.40553 -13.38132 -13.33717 -13.22053 -12.76738 -12.62561 -12.51057 -12.35606 -12.12523 -11.86801 -11.71549 -11.55346 -11.42537 -10.86084 -10.81139 -10.71674 -9.45526 -8.87235 -8.23197 -6.25632 -0.16441 0.00845 1.39046 1.40109 1.50288 1.81326 2.38458 2.43406 2.96360 3.11040 3.20947 3.38470 3.57126 3.86778 3.97476 4.07410 4.17751 4.22725 4.31177 4.39234 4.44009 4.51051 4.59134 4.69386 4.79955 4.82162 4.84021 4.93519 4.99917 5.12208 5.15976 5.19748 5.30753 5.34191 5.50046 5.61707 6.02512 6.08827 6.42128 6.56682 6.70088 6.81480 7.37497 8.93991 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.029956 B = 0.003673 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.471851 B = 7620.966542 C = 7966.486653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.060 3.940 3 O -0.317 6.317 4 C 0.283 3.717 5 N -0.518 5.518 6 C 0.140 3.860 7 C -0.126 4.126 8 C 0.093 3.907 9 N -0.541 5.541 10 C 0.058 3.942 11 C -0.184 4.184 12 C 0.168 3.832 13 C -0.509 4.509 14 H 0.031 0.969 15 C 0.004 3.996 16 N -0.954 5.954 17 Si 0.947 3.053 18 H -0.267 1.267 19 H -0.288 1.288 20 H -0.242 1.242 21 C -0.054 4.054 22 C 0.012 3.988 23 F -0.134 7.134 24 H 0.103 0.897 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.187 0.813 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.046 0.954 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.043 0.957 37 H 0.008 0.992 38 H 0.030 0.970 39 H 0.265 0.735 40 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.023 -8.946 -14.125 23.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.015 4.015 3 O -0.225 6.225 4 C 0.102 3.898 5 N -0.241 5.241 6 C -0.016 4.016 7 C -0.129 4.129 8 C -0.035 4.035 9 N -0.264 5.264 10 C -0.070 4.070 11 C -0.243 4.243 12 C 0.041 3.959 13 C -0.547 4.547 14 H 0.049 0.951 15 C -0.193 4.193 16 N -0.595 5.595 17 Si 0.770 3.230 18 H -0.192 1.192 19 H -0.214 1.214 20 H -0.166 1.166 21 C -0.080 4.080 22 C -0.010 4.010 23 F -0.113 7.113 24 H 0.122 0.878 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.204 0.796 30 H 0.086 0.914 31 H 0.108 0.892 32 H 0.064 0.936 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.062 0.938 37 H 0.025 0.975 38 H 0.048 0.952 39 H 0.073 0.927 40 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -16.807 -9.130 -13.770 23.568 hybrid contribution 1.479 0.664 -0.079 1.623 sum -15.328 -8.466 -13.850 22.326 Atomic orbital electron populations 1.21847 0.90973 1.04418 1.03257 1.22891 0.96328 0.79521 1.02721 1.86281 1.15717 1.32826 1.87695 1.19932 0.85469 0.88899 0.95458 1.67501 1.06782 1.30899 1.18942 1.22791 0.88612 0.97857 0.92352 1.20594 0.97136 0.92831 1.02329 1.21036 0.88780 1.03242 0.90413 1.62050 1.19116 1.30986 1.14276 1.21978 0.99389 0.87533 0.98107 1.22348 1.00713 0.99518 1.01681 1.20012 0.85218 0.95208 0.95439 1.21275 0.95169 1.43384 0.94900 0.95054 1.25869 1.00881 0.94691 0.97825 1.70071 1.20260 1.47612 1.21574 0.85724 0.77754 0.79886 0.79624 1.19222 1.21404 1.16550 1.21607 0.89587 1.02060 0.94786 1.17763 0.88791 0.81759 1.12658 1.91486 1.71924 1.53315 1.94546 0.87805 0.91910 0.91565 0.91635 0.91105 0.79612 0.91374 0.89218 0.93583 0.90785 0.90862 0.90654 0.93838 0.97454 0.95222 0.92659 0.81808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 10.28 71.98 0.74 -1.21 16 2 C 0.06 1.14 6.03 71.98 0.43 1.57 16 3 O -0.32 -8.32 9.99 -90.56 -0.90 -9.23 16 4 C 0.28 7.83 7.50 84.84 0.64 8.47 16 5 N -0.52 -13.26 9.22 -308.77 -2.85 -16.11 16 6 C 0.14 3.26 9.09 84.63 0.77 4.03 16 7 C -0.13 -3.19 4.90 -19.77 -0.10 -3.29 16 8 C 0.09 2.53 4.93 85.56 0.42 2.95 16 9 N -0.54 -20.01 4.65 -905.38 -4.21 -24.23 16 10 C 0.06 1.98 5.56 86.31 0.48 2.46 16 11 C -0.18 -5.12 9.14 71.98 0.66 -4.46 16 12 C 0.17 7.37 3.64 85.56 0.31 7.68 16 13 C -0.51 -28.50 9.12 25.60 0.23 -28.26 16 14 H 0.03 2.00 7.70 -2.91 -0.02 1.98 16 15 C 0.00 0.22 5.47 84.66 0.46 0.68 16 16 N -0.95 -59.39 13.96 21.45 0.30 -59.09 16 17 Si 0.95 42.47 27.46 68.60 1.88 44.36 16 18 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 19 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 20 H -0.24 -9.78 6.55 99.48 0.65 -9.13 16 21 C -0.05 -1.42 9.84 22.48 0.22 -1.20 16 22 C 0.01 0.35 7.35 22.55 0.17 0.52 16 23 F -0.13 -3.97 17.13 44.97 0.77 -3.20 16 24 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.07 1.26 8.10 -2.39 -0.02 1.24 16 28 H 0.07 1.26 8.11 -2.38 -0.02 1.24 16 29 H 0.19 3.39 7.27 -2.91 -0.02 3.37 16 30 H 0.07 1.58 5.98 -2.39 -0.01 1.56 16 31 H 0.09 2.33 7.82 -2.39 -0.02 2.31 16 32 H 0.05 1.93 7.19 -2.39 -0.02 1.91 16 33 H 0.07 2.23 5.99 -2.39 -0.01 2.22 16 34 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.07 1.66 5.61 -2.39 -0.01 1.65 16 36 H 0.04 1.42 6.34 -2.39 -0.02 1.41 16 37 H 0.01 0.33 4.96 -2.39 -0.01 0.32 16 38 H 0.03 1.27 7.23 -2.39 -0.02 1.25 16 39 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 40 H 0.16 3.95 8.06 -2.91 -0.02 3.92 16 Total: -1.00 -67.89 327.27 1.42 -66.47 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: 0.99 Total: 11.10 kcal Atomic # 6 Polarization: -15.52 SS G_CDS: 5.44 Total: -10.08 kcal Atomic # 7 Polarization: -92.66 SS G_CDS: -6.76 Total: -99.42 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: -0.90 Total: -9.23 kcal Atomic # 9 Polarization: -3.97 SS G_CDS: 0.77 Total: -3.20 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 1.88 Total: 44.36 kcal Total: -67.89 1.42 -66.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236692201.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.199 kcal (2) G-P(sol) polarization free energy of solvation -67.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds