Wall clock time and date at job start Tue Mar 31 2020 06:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46899 * 110.99877 * 2 1 4 4 C 1.50700 * 109.47256 * 66.04842 * 3 2 1 5 5 H 1.08005 * 119.99873 * 0.02562 * 4 3 2 6 6 C 1.37874 * 120.00433 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99674 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 120.00318 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.46604 * 90.00628 * 8 6 4 10 10 H 1.48502 * 109.47312 * 210.00306 * 8 6 4 11 11 H 1.48498 * 109.47062 * 330.00844 * 8 6 4 12 12 C 1.46903 * 110.99732 * 236.04810 * 2 1 3 13 13 C 1.50700 * 109.46757 * 293.95082 * 12 2 1 14 14 C 1.38296 * 119.55065 * 95.00695 * 13 12 2 15 15 C 1.38741 * 119.36496 * 179.97438 * 14 13 12 16 16 C 1.38437 * 118.51147 * 359.97438 * 15 14 13 17 17 C 1.39301 * 119.06985 * 0.02562 * 16 15 14 18 18 C 1.48347 * 119.72397 * 179.97438 * 17 16 15 19 19 C 1.39365 * 120.11926 * 179.97438 * 18 17 16 20 20 C 1.38011 * 119.87682 * 179.97438 * 19 18 17 21 21 C 1.38323 * 120.12022 * 359.97438 * 20 19 18 22 22 C 1.38324 * 120.24924 * 0.04483 * 21 20 19 23 23 C 1.38011 * 120.12395 * 359.95455 * 22 21 20 24 24 N 1.31731 * 119.55592 * 275.27222 * 13 12 2 25 25 H 1.09002 * 109.47185 * 183.95128 * 1 2 3 26 26 H 1.08997 * 109.47266 * 303.95559 * 1 2 3 27 27 H 1.09002 * 109.47094 * 63.95492 * 1 2 3 28 28 H 1.09010 * 109.46676 * 186.04393 * 3 2 1 29 29 H 1.08998 * 109.47424 * 306.04472 * 3 2 1 30 30 H 0.96996 * 120.00120 * 179.97438 * 7 6 4 31 31 H 1.08999 * 109.46917 * 173.95719 * 12 2 1 32 32 H 1.08997 * 109.47279 * 53.95364 * 12 2 1 33 33 H 1.08003 * 120.31560 * 0.02562 * 14 13 12 34 34 H 1.08005 * 120.74214 * 179.97438 * 15 14 13 35 35 H 1.08001 * 120.46877 * 180.02562 * 16 15 14 36 36 H 1.08001 * 120.05856 * 359.69659 * 19 18 17 37 37 H 1.08000 * 119.93763 * 180.02562 * 20 19 18 38 38 H 1.07999 * 119.87774 * 180.02562 * 21 20 19 39 39 H 1.08010 * 119.93932 * 179.97438 * 22 21 20 40 40 H 1.08001 * 120.05982 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0471 1.2985 5 1 1.0747 1.5112 2.0489 6 6 2.0276 3.3491 1.5290 7 7 2.7128 4.0016 0.6154 8 14 1.5827 4.1869 3.1382 9 1 2.6589 3.9499 4.1336 10 1 1.4312 5.6466 2.9110 11 1 0.3044 3.6301 3.6492 12 6 1.9954 -0.7660 -1.1377 13 6 1.6369 -2.2204 -0.9728 14 6 0.5008 -2.7165 -1.5858 15 6 0.1746 -4.0562 -1.4320 16 6 1.0053 -4.8547 -0.6645 17 6 2.1338 -4.2884 -0.0759 18 6 3.0336 -5.1305 0.7499 19 6 4.1651 -4.5726 1.3421 20 6 4.9985 -5.3605 2.1098 21 6 4.7122 -6.7014 2.2923 22 6 3.5908 -7.2605 1.7064 23 6 2.7504 -6.4820 0.9368 24 7 2.4070 -3.0008 -0.2426 25 1 -0.3634 -1.0252 0.0708 26 1 -0.3633 0.5740 0.8524 27 1 -0.3633 0.4512 -0.9233 28 1 3.0798 1.3443 -0.1082 29 1 1.5611 1.9274 -0.8309 30 1 2.9873 4.9176 0.7774 31 1 3.0797 -0.6611 -1.1757 32 1 1.5611 -0.3872 -2.0628 33 1 -0.1261 -2.0675 -2.1793 34 1 -0.7076 -4.4670 -1.9004 35 1 0.7817 -5.9019 -0.5241 36 1 4.3917 -3.5266 1.1969 37 1 5.8754 -4.9291 2.5696 38 1 5.3669 -7.3143 2.8941 39 1 3.3722 -8.3082 1.8519 40 1 1.8748 -6.9195 0.4802 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237541732.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:28 Heat of formation + Delta-G solvation = 65.593065 kcal Electronic energy + Delta-G solvation = -20740.318703 eV Core-core repulsion = 17712.804742 eV Total energy + Delta-G solvation = -3027.513961 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.37933 -38.77497 -36.47500 -33.11437 -32.67012 -32.13828 -30.90633 -29.64757 -27.28173 -26.82824 -24.33057 -24.03293 -22.74878 -21.51559 -21.10259 -20.12758 -17.49181 -16.39480 -16.32806 -15.92692 -15.70604 -15.02888 -14.59168 -14.39093 -14.25755 -13.89019 -13.60707 -13.54451 -13.37763 -13.10616 -12.55939 -12.40411 -11.93051 -11.78202 -11.39170 -11.27109 -11.09571 -11.03706 -10.88994 -10.63548 -10.48159 -9.92852 -9.88606 -9.44398 -9.28566 -9.10860 -8.98906 -8.41728 -8.16923 -7.24308 -6.00880 -4.01813 0.60341 1.36760 1.38089 1.82542 3.34291 3.39888 3.43681 3.62072 4.09218 4.18327 4.45686 4.59636 4.82617 4.88657 4.92488 4.99636 5.14291 5.17051 5.25140 5.35606 5.38392 5.55556 5.56012 5.67897 5.86562 5.89482 5.97320 6.10207 6.19342 6.21057 6.23957 6.32832 6.38313 6.46979 6.60503 6.73845 6.81756 6.92661 7.28511 7.32615 7.80692 8.07843 8.18784 8.23397 8.54544 9.05415 9.62077 11.10091 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.017409 B = 0.003854 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.968860 B = 7264.333940 C = 8353.987803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.530 5.530 3 C 0.194 3.806 4 C -0.505 4.505 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.099 3.901 13 C 0.163 3.837 14 C -0.170 4.170 15 C -0.075 4.075 16 C -0.175 4.175 17 C 0.164 3.836 18 C -0.044 4.044 19 C -0.076 4.076 20 C -0.126 4.126 21 C -0.115 4.115 22 C -0.128 4.128 23 C -0.105 4.105 24 N -0.456 5.456 25 H 0.043 0.957 26 H 0.076 0.924 27 H 0.012 0.988 28 H 0.032 0.968 29 H -0.008 1.008 30 H 0.261 0.739 31 H 0.087 0.913 32 H 0.041 0.959 33 H 0.132 0.868 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.140 0.860 37 H 0.125 0.875 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.286 -21.562 -2.895 21.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.254 5.254 3 C 0.069 3.931 4 C -0.544 4.544 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.199 1.199 12 C -0.030 4.030 13 C 0.023 3.977 14 C -0.191 4.191 15 C -0.100 4.100 16 C -0.195 4.195 17 C 0.028 3.972 18 C -0.044 4.044 19 C -0.095 4.095 20 C -0.144 4.144 21 C -0.133 4.133 22 C -0.146 4.146 23 C -0.124 4.124 24 N -0.165 5.165 25 H 0.062 0.938 26 H 0.094 0.906 27 H 0.030 0.970 28 H 0.050 0.950 29 H 0.010 0.990 30 H 0.071 0.929 31 H 0.106 0.894 32 H 0.059 0.941 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.150 0.850 36 H 0.158 0.842 37 H 0.143 0.857 38 H 0.139 0.861 39 H 0.140 0.860 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.310 -21.216 -2.111 21.323 hybrid contribution -1.306 0.588 -0.300 1.463 sum -1.616 -20.628 -2.411 20.831 Atomic orbital electron populations 1.22282 0.88966 0.99485 1.00646 1.62086 1.06849 1.17778 1.38727 1.19763 0.95562 0.80978 0.96765 1.21145 1.34787 0.96848 1.01622 0.91882 1.24977 0.95318 0.97314 0.96980 1.69958 1.38448 1.11478 1.34011 0.86493 0.78880 0.78360 0.83647 1.20596 1.21334 1.19892 1.20986 1.01604 0.86967 0.93434 1.21322 0.90013 0.96090 0.90250 1.22076 0.98518 0.96147 1.02317 1.21434 0.98641 0.93539 0.96430 1.21966 0.96201 1.01052 1.00303 1.19759 0.92582 0.90077 0.94809 1.18559 0.95173 0.92492 0.98222 1.21475 0.92710 1.00990 0.94295 1.21198 0.99970 0.93982 0.99202 1.21245 0.97277 0.95384 0.99408 1.21005 0.95369 0.99719 0.98509 1.21185 0.99597 0.92795 0.98781 1.67468 1.31363 1.03506 1.14146 0.93837 0.90577 0.96950 0.94967 0.98978 0.92934 0.89439 0.94082 0.84989 0.84952 0.85044 0.84248 0.85704 0.86141 0.85959 0.85798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 9.02 60.07 0.54 1.24 16 2 N -0.53 -11.84 4.74 -245.82 -1.17 -13.01 16 3 C 0.19 5.12 4.72 -4.98 -0.02 5.10 16 4 C -0.51 -14.42 8.46 -34.44 -0.29 -14.71 16 5 H 0.06 1.80 7.13 -52.48 -0.37 1.42 16 6 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 7 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 8 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 9 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 12 C 0.10 1.86 5.28 -4.97 -0.03 1.84 16 13 C 0.16 2.77 5.64 -82.61 -0.47 2.30 16 14 C -0.17 -2.36 8.35 -39.37 -0.33 -2.69 16 15 C -0.07 -0.88 10.16 -39.32 -0.40 -1.28 16 16 C -0.18 -2.15 9.46 -39.11 -0.37 -2.52 16 17 C 0.16 2.47 6.73 -82.94 -0.56 1.91 16 18 C -0.04 -0.60 5.88 -104.90 -0.62 -1.21 16 19 C -0.08 -1.05 9.58 -39.25 -0.38 -1.43 16 20 C -0.13 -1.43 10.03 -39.63 -0.40 -1.83 16 21 C -0.11 -1.13 10.04 -39.52 -0.40 -1.53 16 22 C -0.13 -1.23 10.03 -39.63 -0.40 -1.62 16 23 C -0.10 -1.14 9.42 -39.25 -0.37 -1.51 16 24 N -0.46 -8.03 9.34 -6.04 -0.06 -8.09 16 25 H 0.04 0.78 6.40 -51.93 -0.33 0.44 16 26 H 0.08 1.64 6.76 -51.93 -0.35 1.29 16 27 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.03 0.91 7.93 -51.92 -0.41 0.49 16 29 H -0.01 -0.21 8.12 -51.93 -0.42 -0.63 16 30 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.09 1.70 7.93 -51.93 -0.41 1.28 16 32 H 0.04 0.71 8.02 -51.93 -0.42 0.29 16 33 H 0.13 1.60 8.06 -52.48 -0.42 1.18 16 34 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 35 H 0.13 1.20 6.19 -52.49 -0.32 0.88 16 36 H 0.14 2.12 7.54 -52.49 -0.40 1.73 16 37 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 38 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 39 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 40 H 0.12 1.05 6.18 -52.49 -0.32 0.73 16 LS Contribution 335.43 15.07 5.05 5.05 Total: -1.00 -32.05 335.43 -10.46 -42.51 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -5.44 Total: -0.77 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: -4.57 Total: -16.45 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: -0.49 Total: -47.25 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.05 -10.46 -42.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237541732.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.104 kcal (2) G-P(sol) polarization free energy of solvation -32.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds