Wall clock time and date at job start Tue Mar 31 2020 06:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46899 * 110.99877 * 2 1 4 4 C 1.50700 * 109.47256 * 66.04842 * 3 2 1 5 5 H 1.08005 * 119.99873 * 0.02562 * 4 3 2 6 6 C 1.37874 * 120.00433 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99674 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 120.00318 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.46604 * 90.00628 * 8 6 4 10 10 H 1.48502 * 109.47312 * 210.00306 * 8 6 4 11 11 H 1.48498 * 109.47062 * 330.00844 * 8 6 4 12 12 C 1.46903 * 110.99732 * 236.04810 * 2 1 3 13 13 C 1.50700 * 109.46757 * 293.95082 * 12 2 1 14 14 C 1.38296 * 119.55065 * 95.00695 * 13 12 2 15 15 C 1.38741 * 119.36496 * 179.97438 * 14 13 12 16 16 C 1.38437 * 118.51147 * 359.97438 * 15 14 13 17 17 C 1.39301 * 119.06985 * 0.02562 * 16 15 14 18 18 C 1.48347 * 119.72397 * 179.97438 * 17 16 15 19 19 C 1.39365 * 120.11926 * 179.97438 * 18 17 16 20 20 C 1.38011 * 119.87682 * 179.97438 * 19 18 17 21 21 C 1.38323 * 120.12022 * 359.97438 * 20 19 18 22 22 C 1.38324 * 120.24924 * 0.04483 * 21 20 19 23 23 C 1.38011 * 120.12395 * 359.95455 * 22 21 20 24 24 N 1.31731 * 119.55592 * 275.27222 * 13 12 2 25 25 H 1.09002 * 109.47185 * 183.95128 * 1 2 3 26 26 H 1.08997 * 109.47266 * 303.95559 * 1 2 3 27 27 H 1.09002 * 109.47094 * 63.95492 * 1 2 3 28 28 H 1.09010 * 109.46676 * 186.04393 * 3 2 1 29 29 H 1.08998 * 109.47424 * 306.04472 * 3 2 1 30 30 H 0.96996 * 120.00120 * 179.97438 * 7 6 4 31 31 H 1.08999 * 109.46917 * 173.95719 * 12 2 1 32 32 H 1.08997 * 109.47279 * 53.95364 * 12 2 1 33 33 H 1.08003 * 120.31560 * 0.02562 * 14 13 12 34 34 H 1.08005 * 120.74214 * 179.97438 * 15 14 13 35 35 H 1.08001 * 120.46877 * 180.02562 * 16 15 14 36 36 H 1.08001 * 120.05856 * 359.69659 * 19 18 17 37 37 H 1.08000 * 119.93763 * 180.02562 * 20 19 18 38 38 H 1.07999 * 119.87774 * 180.02562 * 21 20 19 39 39 H 1.08010 * 119.93932 * 179.97438 * 22 21 20 40 40 H 1.08001 * 120.05982 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0471 1.2985 5 1 1.0747 1.5112 2.0489 6 6 2.0276 3.3491 1.5290 7 7 2.7128 4.0016 0.6154 8 14 1.5827 4.1869 3.1382 9 1 2.6589 3.9499 4.1336 10 1 1.4312 5.6466 2.9110 11 1 0.3044 3.6301 3.6492 12 6 1.9954 -0.7660 -1.1377 13 6 1.6369 -2.2204 -0.9728 14 6 0.5008 -2.7165 -1.5858 15 6 0.1746 -4.0562 -1.4320 16 6 1.0053 -4.8547 -0.6645 17 6 2.1338 -4.2884 -0.0759 18 6 3.0336 -5.1305 0.7499 19 6 4.1651 -4.5726 1.3421 20 6 4.9985 -5.3605 2.1098 21 6 4.7122 -6.7014 2.2923 22 6 3.5908 -7.2605 1.7064 23 6 2.7504 -6.4820 0.9368 24 7 2.4070 -3.0008 -0.2426 25 1 -0.3634 -1.0252 0.0708 26 1 -0.3633 0.5740 0.8524 27 1 -0.3633 0.4512 -0.9233 28 1 3.0798 1.3443 -0.1082 29 1 1.5611 1.9274 -0.8309 30 1 2.9873 4.9176 0.7774 31 1 3.0797 -0.6611 -1.1757 32 1 1.5611 -0.3872 -2.0628 33 1 -0.1261 -2.0675 -2.1793 34 1 -0.7076 -4.4670 -1.9004 35 1 0.7817 -5.9019 -0.5241 36 1 4.3917 -3.5266 1.1969 37 1 5.8754 -4.9291 2.5696 38 1 5.3669 -7.3143 2.8941 39 1 3.3722 -8.3082 1.8519 40 1 1.8748 -6.9195 0.4802 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237541732.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:28 Heat of formation + Delta-G solvation = 46.197853 kcal Electronic energy + Delta-G solvation = -20741.159742 eV Core-core repulsion = 17712.804742 eV Total energy + Delta-G solvation = -3028.355001 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.44471 -39.70332 -38.15030 -34.88677 -33.81258 -33.50875 -31.77361 -30.81181 -29.15003 -28.34491 -26.00608 -25.04227 -23.94108 -22.73040 -22.23215 -21.62981 -18.64688 -18.28679 -17.42889 -16.94268 -16.85928 -16.64191 -16.17368 -15.78127 -15.45443 -15.28045 -14.84025 -14.74724 -14.34041 -14.16105 -13.95404 -13.64556 -13.51155 -13.33934 -12.91187 -12.80702 -12.65040 -12.54758 -12.31974 -12.13996 -11.90957 -11.89070 -11.37331 -10.90697 -10.64360 -10.47741 -10.30648 -9.84014 -9.17421 -9.01481 -8.22257 -6.32583 -0.35706 0.32908 0.51795 0.88714 1.39178 1.41465 1.52340 2.38557 2.64633 3.05016 3.09870 3.15025 3.46938 3.64094 3.86980 4.04044 4.10989 4.17343 4.19408 4.30815 4.39222 4.44815 4.53211 4.58671 4.66656 4.69856 4.73210 4.81310 5.00840 5.02601 5.13212 5.13744 5.19643 5.24358 5.27713 5.53079 5.61090 5.61705 5.68117 5.80586 6.01197 6.09184 6.28444 6.55516 6.82268 7.13289 7.36748 8.88913 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.017409 B = 0.003854 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.968860 B = 7264.333940 C = 8353.987803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.545 5.545 3 C 0.210 3.790 4 C -0.525 4.525 5 H 0.059 0.941 6 C 0.003 3.997 7 N -0.933 5.933 8 Si 0.970 3.030 9 H -0.275 1.275 10 H -0.278 1.278 11 H -0.264 1.264 12 C 0.103 3.897 13 C 0.134 3.866 14 C -0.172 4.172 15 C -0.064 4.064 16 C -0.165 4.165 17 C 0.143 3.857 18 C -0.069 4.069 19 C -0.108 4.108 20 C -0.136 4.136 21 C -0.112 4.112 22 C -0.123 4.123 23 C -0.102 4.102 24 N -0.498 5.498 25 H 0.068 0.932 26 H 0.056 0.944 27 H 0.023 0.977 28 H 0.001 0.999 29 H -0.029 1.029 30 H 0.265 0.735 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.149 0.851 34 H 0.178 0.822 35 H 0.170 0.830 36 H 0.106 0.894 37 H 0.134 0.866 38 H 0.151 0.849 39 H 0.159 0.841 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.244 -24.835 -2.249 25.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.269 5.269 3 C 0.084 3.916 4 C -0.563 4.563 5 H 0.077 0.923 6 C -0.195 4.195 7 N -0.574 5.574 8 Si 0.795 3.205 9 H -0.200 1.200 10 H -0.203 1.203 11 H -0.189 1.189 12 C -0.025 4.025 13 C -0.005 4.005 14 C -0.192 4.192 15 C -0.089 4.089 16 C -0.184 4.184 17 C 0.006 3.994 18 C -0.070 4.070 19 C -0.127 4.127 20 C -0.153 4.153 21 C -0.130 4.130 22 C -0.140 4.140 23 C -0.121 4.121 24 N -0.208 5.208 25 H 0.087 0.913 26 H 0.075 0.925 27 H 0.041 0.959 28 H 0.019 0.981 29 H -0.012 1.012 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.167 0.833 34 H 0.195 0.805 35 H 0.188 0.812 36 H 0.124 0.876 37 H 0.152 0.848 38 H 0.169 0.831 39 H 0.177 0.823 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -2.275 -24.507 -1.476 24.656 hybrid contribution -0.639 1.457 -0.522 1.674 sum -2.914 -23.050 -1.998 23.319 Atomic orbital electron populations 1.22207 0.87302 1.00744 1.00242 1.61942 1.08441 1.15386 1.41156 1.19384 0.93574 0.83202 0.95402 1.21422 1.35079 0.97525 1.02267 0.92270 1.25907 0.94925 0.97931 1.00765 1.70081 1.39220 1.11958 1.36119 0.85370 0.78915 0.77380 0.78871 1.20040 1.20343 1.18863 1.20899 1.00198 0.88710 0.92693 1.21010 0.92032 0.94746 0.92687 1.22247 0.97336 0.97754 1.01858 1.21928 0.99467 0.92238 0.95290 1.22403 0.94557 1.02858 0.98602 1.20189 0.94137 0.89390 0.95643 1.18766 0.95221 0.93926 0.99038 1.21386 0.94583 1.00032 0.96715 1.21380 0.99997 0.94999 0.98970 1.21637 0.97785 0.94600 0.98966 1.21481 0.94368 1.01279 0.96903 1.21508 1.00643 0.91366 0.98583 1.67320 1.32751 1.05337 1.15400 0.91345 0.92539 0.95898 0.98118 1.01158 0.92574 0.91741 0.92716 0.83310 0.80493 0.81246 0.87624 0.84812 0.83120 0.82303 0.82959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.75 9.02 127.69 1.15 2.90 16 2 N -0.54 -25.59 4.74 -931.63 -4.42 -30.01 16 3 C 0.21 11.81 4.72 85.56 0.40 12.21 16 4 C -0.52 -31.08 8.46 25.60 0.22 -30.87 16 5 H 0.06 3.48 7.13 -2.91 -0.02 3.46 16 6 C 0.00 0.16 5.46 84.65 0.46 0.63 16 7 N -0.93 -57.49 13.29 21.45 0.28 -57.21 16 8 Si 0.97 45.59 29.54 68.60 2.03 47.62 16 9 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 10 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 11 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 12 C 0.10 4.14 5.28 85.56 0.45 4.59 16 13 C 0.13 4.67 5.64 42.59 0.24 4.91 16 14 C -0.17 -4.48 8.35 22.40 0.19 -4.29 16 15 C -0.06 -1.27 10.16 22.44 0.23 -1.04 16 16 C -0.16 -3.53 9.46 22.57 0.21 -3.32 16 17 C 0.14 4.26 6.73 41.96 0.28 4.54 16 18 C -0.07 -1.87 5.88 -20.05 -0.12 -1.99 16 19 C -0.11 -3.20 9.58 22.49 0.22 -2.98 16 20 C -0.14 -3.11 10.03 22.24 0.22 -2.88 16 21 C -0.11 -1.92 10.04 22.31 0.22 -1.70 16 22 C -0.12 -1.90 10.03 22.24 0.22 -1.68 16 23 C -0.10 -1.93 9.42 22.48 0.21 -1.72 16 24 N -0.50 -18.42 9.34 -173.02 -1.62 -20.03 16 25 H 0.07 2.41 6.40 -2.39 -0.02 2.39 16 26 H 0.06 2.48 6.76 -2.39 -0.02 2.46 16 27 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.00 0.04 7.93 -2.38 -0.02 0.02 16 29 H -0.03 -1.72 8.12 -2.39 -0.02 -1.74 16 30 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 31 H 0.06 2.78 7.93 -2.39 -0.02 2.76 16 32 H 0.05 1.98 8.02 -2.39 -0.02 1.96 16 33 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 34 H 0.18 1.93 8.06 -2.91 -0.02 1.91 16 35 H 0.17 2.23 6.19 -2.91 -0.02 2.21 16 36 H 0.11 3.70 7.54 -2.91 -0.02 3.68 16 37 H 0.13 2.63 8.06 -2.91 -0.02 2.61 16 38 H 0.15 1.65 8.06 -2.91 -0.02 1.62 16 39 H 0.16 1.32 8.06 -2.91 -0.02 1.29 16 40 H 0.15 1.87 6.18 -2.91 -0.02 1.86 16 Total: -1.00 -74.33 335.43 2.12 -72.21 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: 1.03 Total: 10.10 kcal Atomic # 6 Polarization: -27.50 SS G_CDS: 4.82 Total: -22.68 kcal Atomic # 7 Polarization: -101.50 SS G_CDS: -5.75 Total: -107.25 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -74.33 2.12 -72.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237541732.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.412 kcal (2) G-P(sol) polarization free energy of solvation -74.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds