Wall clock time and date at job start Tue Mar 31 2020 07:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46891 * 2 1 4 4 C 1.53005 * 109.46891 * 180.02562 * 3 2 1 5 5 N 1.46909 * 109.46853 * 174.86887 * 4 3 2 6 6 C 1.46901 * 110.99520 * 199.76354 * 5 4 3 7 7 C 1.50697 * 109.47204 * 66.04980 * 6 5 4 8 8 H 1.07997 * 119.99919 * 359.97438 * 7 6 5 9 9 C 1.37873 * 119.99901 * 180.02562 * 7 6 5 10 10 N 1.31520 * 120.00318 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 120.00146 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.46743 * 89.99699 * 11 9 7 13 13 H 1.48493 * 109.47311 * 209.99402 * 11 9 7 14 14 H 1.48501 * 109.46984 * 330.00140 * 11 9 7 15 15 C 1.46901 * 110.99790 * 75.81148 * 5 4 3 16 16 C 1.50707 * 109.46775 * 199.64459 * 15 5 4 17 17 C 1.33633 * 126.03541 * 84.66181 * 16 15 5 18 18 N 1.31785 * 114.50011 * 179.73975 * 17 16 15 19 19 C 1.29026 * 117.12339 * 359.97438 * 18 17 16 20 20 C 1.50692 * 124.91632 * 180.02562 * 19 18 17 21 21 C 1.52999 * 109.47298 * 90.02515 * 20 19 18 22 22 S 1.70978 * 110.16647 * 0.02562 * 19 18 17 23 23 H 1.08997 * 109.46742 * 60.00430 * 1 2 3 24 24 H 1.09000 * 109.46890 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47200 * 299.99945 * 1 2 3 26 26 H 1.08995 * 109.47200 * 240.00055 * 2 1 3 27 27 H 1.09004 * 109.47088 * 119.99769 * 2 1 3 28 28 H 1.09003 * 109.47286 * 60.00243 * 3 2 1 29 29 H 1.09004 * 109.47066 * 299.99783 * 3 2 1 30 30 H 1.08995 * 109.47356 * 54.86647 * 4 3 2 31 31 H 1.09003 * 109.46934 * 294.86460 * 4 3 2 32 32 H 1.09004 * 109.46798 * 186.04806 * 6 5 4 33 33 H 1.08998 * 109.47089 * 306.04668 * 6 5 4 34 34 H 0.96993 * 120.00104 * 180.02562 * 10 9 7 35 35 H 1.08996 * 109.47026 * 79.64612 * 15 5 4 36 36 H 1.09001 * 109.47020 * 319.64407 * 15 5 4 37 37 H 1.08001 * 122.75065 * 359.73531 * 17 16 15 38 38 H 1.09003 * 109.47303 * 210.02383 * 20 19 18 39 39 H 1.08999 * 109.47362 * 330.02723 * 20 19 18 40 40 H 1.08998 * 109.47383 * 299.99701 * 21 20 19 41 41 H 1.09003 * 109.47212 * 59.99945 * 21 20 19 42 42 H 1.09002 * 109.47542 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0596 2.8220 -0.1245 6 6 5.4517 2.8464 -0.5929 7 6 5.5172 2.3150 -2.0015 8 1 4.6150 1.9911 -2.4989 9 6 6.7290 2.2413 -2.6549 10 7 7.8279 2.6353 -2.0490 11 14 6.8104 1.5818 -4.4008 12 1 6.6421 2.7019 -5.3612 13 1 8.1269 0.9322 -4.6237 14 1 5.7266 0.5874 -4.6052 15 6 3.9186 3.5467 1.1455 16 6 3.9607 5.0304 0.8846 17 6 2.9251 5.7953 0.5266 18 7 3.2180 7.0697 0.3625 19 6 4.4429 7.4223 0.5625 20 6 4.9692 8.8277 0.4257 21 6 4.8499 9.5501 1.7691 22 16 5.3824 6.0642 1.0054 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 3.9330 0.8512 -0.8413 31 1 3.9337 1.0102 0.9316 32 1 5.8237 3.8709 -0.5734 33 1 6.0653 2.2246 0.0589 34 1 8.6803 2.5838 -2.5088 35 1 4.7352 3.2719 1.8132 36 1 2.9670 3.2860 1.6088 37 1 1.9297 5.4014 0.3835 38 1 6.0156 8.7958 0.1220 39 1 4.3886 9.3615 -0.3266 40 1 3.8036 9.5820 2.0728 41 1 5.4305 9.0163 2.5215 42 1 5.2302 10.5668 1.6701 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237827217.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:39 Heat of formation + Delta-G solvation = 20.708531 kcal Electronic energy + Delta-G solvation = -19976.412610 eV Core-core repulsion = 17082.396261 eV Total energy + Delta-G solvation = -2894.016349 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.32660 -37.28940 -34.50181 -33.77457 -32.54503 -30.35295 -28.59953 -26.98528 -25.51285 -23.73677 -22.94963 -22.39203 -20.80650 -20.20690 -18.67017 -17.65572 -16.39623 -15.50154 -14.91603 -14.81952 -14.63104 -14.30715 -14.01607 -13.91200 -13.60257 -13.36586 -13.02655 -12.46112 -12.24770 -12.15270 -12.01090 -11.78171 -11.67565 -11.48646 -11.10429 -10.94006 -10.87011 -10.73970 -10.67096 -10.66257 -10.31052 -10.04403 -9.78979 -9.24765 -9.20923 -8.74660 -8.44629 -8.29163 -7.32750 -6.03750 -4.04618 1.14031 1.78383 2.22352 3.25409 3.31368 3.37411 3.40681 4.41212 4.41765 4.84121 5.05779 5.21485 5.23568 5.26941 5.31741 5.33544 5.39223 5.43771 5.58173 5.72962 5.74960 5.79414 5.87352 5.93636 6.00478 6.04888 6.11067 6.13268 6.15060 6.27714 6.34195 6.45455 6.61144 6.70941 6.81425 7.25843 7.29253 7.77662 8.05504 8.14096 8.15874 8.49965 9.02322 9.59138 11.07068 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.010430 B = 0.006081 C = 0.004164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2683.833522 B = 4603.720720 C = 6722.386245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C -0.113 4.113 4 C 0.062 3.938 5 N -0.531 5.531 6 C 0.189 3.811 7 C -0.506 4.506 8 H 0.063 0.937 9 C 0.057 3.943 10 N -0.897 5.897 11 Si 0.896 3.104 12 H -0.280 1.280 13 H -0.287 1.287 14 H -0.273 1.273 15 C 0.126 3.874 16 C -0.184 4.184 17 C 0.036 3.964 18 N -0.475 5.475 19 C 0.026 3.974 20 C -0.044 4.044 21 C -0.144 4.144 22 S 0.134 5.866 23 H 0.053 0.947 24 H 0.048 0.952 25 H 0.050 0.950 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.050 0.950 29 H 0.068 0.932 30 H 0.089 0.911 31 H 0.019 0.981 32 H 0.036 0.964 33 H -0.010 1.010 34 H 0.261 0.739 35 H 0.037 0.963 36 H 0.082 0.918 37 H 0.170 0.830 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.059 0.941 41 H 0.056 0.944 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.062 5.206 8.460 12.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.151 4.151 4 C -0.066 4.066 5 N -0.256 5.256 6 C 0.064 3.936 7 C -0.545 4.545 8 H 0.081 0.919 9 C -0.145 4.145 10 N -0.536 5.536 11 Si 0.723 3.277 12 H -0.207 1.207 13 H -0.213 1.213 14 H -0.198 1.198 15 C -0.004 4.004 16 C -0.306 4.306 17 C -0.115 4.115 18 N -0.190 5.190 19 C -0.252 4.252 20 C -0.085 4.085 21 C -0.203 4.203 22 S 0.389 5.611 23 H 0.072 0.928 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.107 0.893 31 H 0.037 0.963 32 H 0.054 0.946 33 H 0.007 0.993 34 H 0.071 0.929 35 H 0.055 0.945 36 H 0.101 0.899 37 H 0.187 0.813 38 H 0.101 0.899 39 H 0.108 0.892 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.469 5.717 8.171 12.460 hybrid contribution -0.143 -1.147 -0.625 1.314 sum -7.612 4.571 7.546 11.653 Atomic orbital electron populations 1.21757 0.96372 1.00960 1.01584 1.21497 0.95259 0.97616 1.01840 1.21631 0.96129 0.95546 1.01838 1.22044 0.93713 0.90271 1.00599 1.62124 1.25916 1.13348 1.24171 1.19840 0.81103 0.97385 0.95290 1.21119 0.93298 1.41599 0.98437 0.91855 1.24966 0.95635 0.95719 0.98156 1.69955 0.98426 1.47869 1.37386 0.86535 0.77247 0.79103 0.84768 1.20656 1.21309 1.19834 1.20420 1.00843 0.86409 0.92773 1.25886 0.94747 1.01064 1.08892 1.21468 1.00563 0.87182 1.02263 1.66211 1.17704 1.17654 1.17415 1.26867 0.92521 1.00854 1.04938 1.20127 1.01154 0.87829 0.99414 1.21753 1.02511 0.99915 0.96104 1.84139 1.13790 0.99813 1.63373 0.92801 0.93284 0.93111 0.91899 0.92544 0.93087 0.91291 0.89286 0.96267 0.94623 0.99257 0.92939 0.94478 0.89946 0.81315 0.89883 0.89238 0.92178 0.92488 0.91786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.91 37.16 0.37 -1.28 16 2 C -0.12 -1.61 5.93 -26.73 -0.16 -1.76 16 3 C -0.11 -1.71 5.26 -26.73 -0.14 -1.85 16 4 C 0.06 1.15 4.79 -3.82 -0.02 1.13 16 5 N -0.53 -11.15 4.35 -237.50 -1.03 -12.18 16 6 C 0.19 4.84 4.55 -4.98 -0.02 4.82 16 7 C -0.51 -14.10 8.23 -34.44 -0.28 -14.38 16 8 H 0.06 1.76 7.31 -52.49 -0.38 1.37 16 9 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 10 N -0.90 -26.46 13.29 55.43 0.74 -25.72 16 11 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 14 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 15 C 0.13 2.25 5.35 -4.97 -0.03 2.22 16 16 C -0.18 -3.31 5.53 -35.92 -0.20 -3.51 16 17 C 0.04 0.63 11.25 -19.19 -0.22 0.42 16 18 N -0.48 -8.37 10.54 -11.87 -0.13 -8.50 16 19 C 0.03 0.41 6.64 -13.46 -0.09 0.32 16 20 C -0.04 -0.54 6.52 -27.89 -0.18 -0.72 16 21 C -0.14 -1.44 9.89 37.16 0.37 -1.08 16 22 S 0.13 2.31 22.21 -107.50 -2.39 -0.08 16 23 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.71 6.90 -51.93 -0.36 0.35 16 29 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.09 1.86 6.58 -51.93 -0.34 1.52 16 31 H 0.02 0.34 8.00 -51.93 -0.42 -0.07 16 32 H 0.04 0.97 6.53 -51.93 -0.34 0.63 16 33 H -0.01 -0.29 8.12 -51.93 -0.42 -0.71 16 34 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 35 H 0.04 0.67 8.00 -51.93 -0.42 0.26 16 36 H 0.08 1.26 6.56 -51.93 -0.34 0.92 16 37 H 0.17 2.62 8.06 -52.49 -0.42 2.19 16 38 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 354.47 15.07 5.34 5.34 Total: -1.00 -30.43 354.47 -10.41 -40.84 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -7.22 Total: -2.21 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: -0.70 Total: -14.16 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: -0.42 Total: -46.39 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: 2.31 SS G_CDS: -2.39 Total: -0.08 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.43 -10.41 -40.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237827217.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.548 kcal (2) G-P(sol) polarization free energy of solvation -30.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds