Wall clock time and date at job start Tue Mar 31 2020 05:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53003 * 109.47522 * 2 1 4 4 N 1.46902 * 109.47228 * 177.79942 * 3 2 1 5 5 C 1.46906 * 111.00039 * 58.72276 * 4 3 2 6 6 C 1.50695 * 109.47132 * 66.04608 * 5 4 3 7 7 H 1.08000 * 120.00199 * 359.97438 * 6 5 4 8 8 C 1.37875 * 119.99901 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00289 * 359.97438 * 8 6 5 10 10 Si 1.86808 * 119.99739 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47108 * 59.99783 * 10 8 6 12 12 H 1.48507 * 109.46745 * 179.97438 * 10 8 6 13 13 H 1.48493 * 109.46966 * 299.99264 * 10 8 6 14 14 C 1.46898 * 110.99761 * 294.76874 * 4 3 2 15 15 C 1.50689 * 109.47204 * 291.01418 * 14 4 3 16 16 C 1.38497 * 120.40285 * 103.36335 * 15 14 4 17 17 C 1.39133 * 118.41039 * 179.97438 * 16 15 14 18 18 O 1.35962 * 120.44903 * 180.02562 * 17 16 15 19 19 C 1.42897 * 117.00327 * 179.97438 * 18 17 16 20 20 C 1.38641 * 119.11380 * 0.02562 * 17 16 15 21 21 N 1.31894 * 120.71137 * 359.97438 * 20 17 16 22 22 C 1.32022 * 121.74745 * 0.02562 * 21 20 17 23 23 F 1.35108 * 119.59048 * 180.02562 * 22 21 20 24 24 H 1.08993 * 109.47835 * 180.02562 * 1 2 3 25 25 H 1.09009 * 109.46906 * 300.00221 * 1 2 3 26 26 H 1.09005 * 109.47402 * 59.99651 * 1 2 3 27 27 H 1.09004 * 109.47266 * 240.00077 * 2 1 3 28 28 H 1.09005 * 109.47402 * 120.00349 * 2 1 3 29 29 H 1.08994 * 109.46915 * 57.79932 * 3 2 1 30 30 H 1.09001 * 109.46865 * 297.79502 * 3 2 1 31 31 H 1.08996 * 109.46994 * 186.04439 * 5 4 3 32 32 H 1.09000 * 109.46622 * 306.04727 * 5 4 3 33 33 H 0.96998 * 119.99947 * 179.97438 * 9 8 6 34 34 H 1.09011 * 109.46915 * 171.01485 * 14 4 3 35 35 H 1.08998 * 109.47507 * 51.01958 * 14 4 3 36 36 H 1.08003 * 120.79809 * 0.02562 * 16 15 14 37 37 H 1.09000 * 109.47021 * 180.02562 * 19 18 17 38 38 H 1.09003 * 109.47276 * 300.00490 * 19 18 17 39 39 H 1.09002 * 109.46880 * 60.00550 * 19 18 17 40 40 H 1.07995 * 119.64511 * 179.72042 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5081 1.4428 0.0532 5 6 4.0764 0.7159 -1.0899 6 6 3.7637 1.4586 -2.3633 7 1 3.1988 2.3784 -2.3271 8 6 4.1978 0.9634 -3.5746 9 7 4.8852 -0.1569 -3.6187 10 14 3.8107 1.8845 -5.1530 11 1 4.4012 3.2455 -5.0894 12 1 4.3851 1.1496 -6.3085 13 1 2.3385 1.9907 -5.3157 14 6 3.9889 0.8843 1.3239 15 6 3.6522 1.8301 2.4477 16 6 2.5944 1.5583 3.2994 17 6 2.3205 2.4596 4.3233 18 8 1.2923 2.2334 5.1836 19 6 1.0773 3.2064 6.2078 20 6 3.1102 3.5915 4.4548 21 7 4.1093 3.8160 3.6236 22 6 4.3967 2.9819 2.6414 23 9 5.4306 3.2546 1.8155 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6449 1.9676 0.8696 30 1 1.7093 1.9448 -0.9091 31 1 5.1571 0.6386 -0.9704 32 1 3.6436 -0.2834 -1.1365 33 1 5.1902 -0.5055 -4.4710 34 1 5.0693 0.7479 1.2752 35 1 3.5090 -0.0779 1.5027 36 1 1.9969 0.6676 3.1724 37 1 0.2294 2.9051 6.8230 38 1 1.9689 3.2818 6.8304 39 1 0.8698 4.1743 5.7516 40 1 2.9024 4.2991 5.2437 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238121285.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:51 Heat of formation + Delta-G solvation = -40.926468 kcal Electronic energy + Delta-G solvation = -22610.698195 eV Core-core repulsion = 19147.795976 eV Total energy + Delta-G solvation = -3462.902220 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.52162 -40.69544 -38.38912 -37.34096 -33.32985 -32.78960 -31.71777 -30.26689 -27.88144 -27.16351 -26.26517 -24.10718 -23.55718 -22.15418 -21.84825 -19.39214 -18.04561 -17.70498 -17.46679 -16.27444 -16.18455 -15.56716 -15.04864 -14.89634 -14.73752 -14.34953 -14.18940 -13.68487 -13.55698 -13.30111 -12.93969 -12.87566 -12.74552 -12.29089 -12.03895 -11.60660 -11.55591 -11.34722 -11.14476 -10.97946 -10.90949 -10.70961 -10.52858 -9.97575 -9.77535 -9.60488 -9.58864 -9.19176 -8.41287 -8.30677 -7.22459 -6.01012 -4.01582 0.94568 1.12613 2.93269 3.35393 3.39362 3.42760 3.55356 3.78335 4.41665 4.44464 4.58019 4.74049 4.85254 4.87889 4.97174 5.16783 5.26961 5.32762 5.37085 5.49061 5.53620 5.74628 5.80944 5.85174 5.99157 6.06049 6.11291 6.31697 6.37044 6.46623 6.52289 6.72093 6.91348 7.00785 7.28455 7.37811 7.63790 7.79534 8.07190 8.17068 8.52580 9.04922 9.62188 11.09770 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.021535 B = 0.004652 C = 0.004149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.876193 B = 6018.032116 C = 6747.777303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.163 4.163 3 C 0.065 3.935 4 N -0.527 5.527 5 C 0.191 3.809 6 C -0.504 4.504 7 H 0.062 0.938 8 C 0.057 3.943 9 N -0.899 5.899 10 Si 0.896 3.104 11 H -0.276 1.276 12 H -0.288 1.288 13 H -0.278 1.278 14 C 0.088 3.912 15 C -0.093 4.093 16 C -0.079 4.079 17 C 0.061 3.939 18 O -0.310 6.310 19 C 0.024 3.976 20 C 0.043 3.957 21 N -0.484 5.484 22 C 0.296 3.704 23 F -0.099 7.099 24 H 0.046 0.954 25 H 0.045 0.955 26 H 0.054 0.946 27 H 0.079 0.921 28 H 0.050 0.950 29 H 0.049 0.951 30 H 0.082 0.918 31 H 0.030 0.970 32 H 0.002 0.998 33 H 0.261 0.739 34 H 0.087 0.913 35 H 0.048 0.952 36 H 0.149 0.851 37 H 0.102 0.898 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.686 2.960 18.045 19.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.202 4.202 3 C -0.063 4.063 4 N -0.250 5.250 5 C 0.066 3.934 6 C -0.542 4.542 7 H 0.080 0.920 8 C -0.144 4.144 9 N -0.539 5.539 10 Si 0.724 3.276 11 H -0.202 1.202 12 H -0.214 1.214 13 H -0.203 1.203 14 C -0.041 4.041 15 C -0.097 4.097 16 C -0.106 4.106 17 C 0.014 3.986 18 O -0.222 6.222 19 C -0.071 4.071 20 C -0.115 4.115 21 N -0.199 5.199 22 C 0.141 3.859 23 F -0.078 7.078 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.098 0.902 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.100 0.900 31 H 0.048 0.952 32 H 0.020 0.980 33 H 0.071 0.929 34 H 0.105 0.895 35 H 0.066 0.934 36 H 0.166 0.834 37 H 0.120 0.880 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -7.007 3.916 17.942 19.655 hybrid contribution -0.667 -0.773 -0.960 1.401 sum -7.673 3.143 16.981 18.898 Atomic orbital electron populations 1.21653 0.96441 1.00742 1.01227 1.22166 0.95547 1.00184 1.02283 1.22069 0.88204 0.94589 1.01462 1.62398 1.06732 1.54972 1.00910 1.19814 0.94963 0.92175 0.86411 1.21069 1.34493 1.08432 0.90238 0.92016 1.24945 0.95298 0.95087 0.99106 1.69938 1.37619 1.20369 1.25952 0.86590 0.78514 0.79939 0.82555 1.20168 1.21404 1.20338 1.21002 1.01444 0.93171 0.88471 1.20661 0.94885 0.96298 0.97869 1.20740 0.97155 0.99950 0.92711 1.19929 0.90271 0.95886 0.92562 1.86095 1.47040 1.48060 1.40994 1.23116 1.02427 0.92166 0.89435 1.22477 0.92721 0.96697 0.99575 1.66851 1.17926 1.31035 1.04079 1.17809 0.87816 0.91284 0.89000 1.91669 1.54491 1.93500 1.68153 0.93525 0.93560 0.92726 0.90217 0.93144 0.93268 0.90012 0.95206 0.98028 0.92907 0.89521 0.93357 0.83363 0.87964 0.92437 0.92361 0.81971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.91 37.15 0.37 -1.68 16 2 C -0.16 -2.79 5.26 -26.73 -0.14 -2.93 16 3 C 0.07 1.23 4.99 -3.82 -0.02 1.21 16 4 N -0.53 -11.07 4.67 -237.52 -1.11 -12.18 16 5 C 0.19 4.80 4.45 -4.98 -0.02 4.78 16 6 C -0.50 -13.93 8.53 -34.44 -0.29 -14.22 16 7 H 0.06 1.71 7.10 -52.49 -0.37 1.34 16 8 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 9 N -0.90 -26.39 13.29 55.43 0.74 -25.66 16 10 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 14 C 0.09 1.54 4.68 -4.98 -0.02 1.52 16 15 C -0.09 -1.48 4.61 -104.43 -0.48 -1.96 16 16 C -0.08 -1.06 8.99 -39.15 -0.35 -1.42 16 17 C 0.06 0.75 6.71 -39.10 -0.26 0.49 16 18 O -0.31 -3.26 10.51 -19.62 -0.21 -3.47 16 19 C 0.02 0.15 9.82 101.05 0.99 1.14 16 20 C 0.04 0.54 10.22 -17.38 -0.18 0.36 16 21 N -0.48 -7.69 10.37 -13.48 -0.14 -7.83 16 22 C 0.30 5.10 8.36 -17.37 -0.15 4.96 16 23 F -0.10 -1.92 16.75 2.25 0.04 -1.88 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.08 1.62 6.37 -51.93 -0.33 1.29 16 28 H 0.05 0.80 6.26 -51.93 -0.33 0.47 16 29 H 0.05 0.85 6.64 -51.93 -0.34 0.50 16 30 H 0.08 1.71 6.89 -51.93 -0.36 1.35 16 31 H 0.03 0.82 7.89 -51.93 -0.41 0.41 16 32 H 0.00 0.05 6.01 -51.93 -0.31 -0.26 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.09 1.56 7.78 -51.92 -0.40 1.16 16 35 H 0.05 0.78 5.91 -51.93 -0.31 0.48 16 36 H 0.15 1.78 8.05 -52.48 -0.42 1.36 16 37 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.29 7.68 -51.93 -0.40 -0.11 16 39 H 0.06 0.32 7.67 -51.93 -0.40 -0.08 16 40 H 0.16 1.44 6.31 -52.49 -0.33 1.11 16 LS Contribution 329.88 15.07 4.97 4.97 Total: -1.00 -30.94 329.88 -6.93 -37.87 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: -5.54 Total: -2.25 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: -0.65 Total: -6.25 kcal Atomic # 7 Polarization: -45.15 SS G_CDS: -0.51 Total: -45.67 kcal Atomic # 8 Polarization: -3.26 SS G_CDS: -0.21 Total: -3.47 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.04 Total: -1.88 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.94 -6.93 -37.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238121285.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.057 kcal (2) G-P(sol) polarization free energy of solvation -30.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds