Wall clock time and date at job start Tue Mar 31 2020 05:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53005 * 109.46695 * 2 1 4 4 C 1.53000 * 109.47033 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47466 * 179.97438 * 4 3 2 6 6 C 1.36936 * 120.00039 * 270.00098 * 5 4 3 7 7 H 1.08007 * 119.99961 * 13.69975 * 6 5 4 8 8 C 1.38804 * 119.99982 * 193.70044 * 6 5 4 9 9 N 1.31618 * 120.00168 * 315.25771 * 8 6 5 10 10 Si 1.86803 * 120.00111 * 135.25939 * 8 6 5 11 11 H 1.48499 * 109.47361 * 89.99805 * 10 8 6 12 12 H 1.48501 * 109.47160 * 209.99985 * 10 8 6 13 13 H 1.48498 * 109.47052 * 329.99946 * 10 8 6 14 14 C 1.46499 * 119.99871 * 89.99485 * 5 4 3 15 15 C 1.50697 * 109.46785 * 97.01389 * 14 5 4 16 16 C 1.38504 * 120.39974 * 102.28914 * 15 14 5 17 17 C 1.39138 * 118.40724 * 180.02562 * 16 15 14 18 18 O 1.35963 * 120.44281 * 180.02562 * 17 16 15 19 19 C 1.42899 * 116.99597 * 179.97438 * 18 17 16 20 20 C 1.38629 * 119.11265 * 359.97438 * 17 16 15 21 21 N 1.31897 * 120.71835 * 359.97438 * 20 17 16 22 22 C 1.32022 * 121.74413 * 0.02562 * 21 20 17 23 23 F 1.35099 * 119.59169 * 180.02562 * 22 21 20 24 24 H 1.09004 * 109.47063 * 299.99838 * 1 2 3 25 25 H 1.08994 * 109.47439 * 60.00148 * 1 2 3 26 26 H 1.09005 * 109.46870 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47355 * 240.00350 * 2 1 3 28 28 H 1.08997 * 109.47545 * 119.99322 * 2 1 3 29 29 H 1.08992 * 109.47352 * 59.99850 * 3 2 1 30 30 H 1.09005 * 109.46750 * 299.99721 * 3 2 1 31 31 H 1.09000 * 109.47126 * 59.99403 * 4 3 2 32 32 H 1.09003 * 109.46776 * 299.99872 * 4 3 2 33 33 H 0.97000 * 119.99984 * 180.02562 * 9 8 6 34 34 H 1.08997 * 109.46945 * 337.01754 * 14 5 4 35 35 H 1.08999 * 109.47134 * 217.01564 * 14 5 4 36 36 H 1.08001 * 120.79614 * 0.04467 * 16 15 14 37 37 H 1.08997 * 109.47182 * 300.00000 * 19 18 17 38 38 H 1.08998 * 109.47305 * 60.00381 * 19 18 17 39 39 H 1.09007 * 109.46626 * 179.97438 * 19 18 17 40 40 H 1.08006 * 119.64194 * 179.72231 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4427 -0.0006 5 7 4.0583 2.8239 -0.0013 6 6 4.2860 3.4691 -1.1874 7 1 3.9044 3.0552 -2.1092 8 6 5.0073 4.6549 -1.2052 9 7 4.7566 5.5910 -0.3146 10 14 6.3337 4.9222 -2.4931 11 1 5.7359 5.5575 -3.6949 12 1 7.3902 5.8068 -1.9394 13 1 6.9294 3.6149 -2.8689 14 6 4.3029 3.5149 1.2672 15 6 5.7663 3.4233 1.6149 16 6 6.6046 4.5067 1.4098 17 6 7.9487 4.3764 1.7450 18 8 8.8081 5.4138 1.5614 19 6 10.1717 5.1998 1.9312 20 6 8.3996 3.1752 2.2698 21 7 7.5702 2.1658 2.4516 22 6 6.2894 2.2552 2.1445 23 9 5.4785 1.1942 2.3493 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8935 -0.5137 0.8900 29 1 1.6766 1.9564 0.8899 30 1 1.6766 1.9563 -0.8901 31 1 3.9330 0.9289 -0.8908 32 1 3.9337 0.9287 0.8892 33 1 5.2604 6.4199 -0.3273 34 1 3.7123 3.0477 2.0552 35 1 4.0170 4.5623 1.1713 36 1 6.2239 5.4305 0.9997 37 1 10.2267 4.9583 2.9926 38 1 10.5807 4.3740 1.3490 39 1 10.7480 6.1037 1.7335 40 1 9.4421 3.0632 2.5288 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238122749.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:13 Heat of formation + Delta-G solvation = -19.638337 kcal Electronic energy + Delta-G solvation = -23108.738277 eV Core-core repulsion = 19646.759180 eV Total energy + Delta-G solvation = -3461.979097 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -48.26501 -40.06086 -37.70438 -36.43815 -34.37458 -31.96745 -31.54314 -29.86003 -27.96072 -27.32278 -25.77807 -23.98057 -22.93549 -21.90525 -20.79328 -19.96845 -17.74638 -17.31291 -17.15170 -16.47548 -15.72658 -15.19974 -14.92508 -14.80694 -14.32610 -13.95841 -13.80930 -13.53524 -13.16878 -12.94931 -12.69788 -12.49801 -12.28953 -12.09322 -12.01696 -11.73885 -11.31888 -11.11457 -10.89680 -10.82412 -10.67950 -10.51283 -10.42735 -10.14315 -9.93746 -9.75769 -9.13398 -8.95470 -8.22903 -7.77929 -6.99905 -6.07247 -3.15028 1.57162 1.81132 3.34594 3.48029 3.49018 3.55229 4.14299 4.28229 4.46179 4.96556 5.02498 5.11770 5.21649 5.25972 5.38904 5.40832 5.51415 5.55735 5.59231 5.66889 5.96111 5.99841 6.08835 6.16237 6.29283 6.35484 6.36922 6.47400 6.58618 6.62924 6.73163 6.93879 7.04816 7.06062 7.19535 7.51331 7.62443 7.78548 8.14665 8.20259 9.01891 9.73471 10.20131 10.93866 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.016573 B = 0.006719 C = 0.005194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.139025 B = 4166.305852 C = 5389.931878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.137 4.137 4 C 0.143 3.857 5 N -0.584 5.584 6 C -0.262 4.262 7 H 0.083 0.917 8 C 0.022 3.978 9 N -0.863 5.863 10 Si 0.847 3.153 11 H -0.288 1.288 12 H -0.282 1.282 13 H -0.283 1.283 14 C 0.170 3.830 15 C -0.090 4.090 16 C -0.066 4.066 17 C 0.050 3.950 18 O -0.310 6.310 19 C 0.025 3.975 20 C 0.024 3.976 21 N -0.495 5.495 22 C 0.261 3.739 23 F -0.118 7.118 24 H 0.050 0.950 25 H 0.051 0.949 26 H 0.045 0.955 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.046 0.954 32 H 0.050 0.950 33 H 0.258 0.742 34 H 0.037 0.963 35 H 0.130 0.870 36 H 0.178 0.822 37 H 0.054 0.946 38 H 0.053 0.947 39 H 0.097 0.903 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.960 -3.072 5.264 6.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.177 4.177 4 C 0.016 3.984 5 N -0.302 5.302 6 C -0.389 4.389 7 H 0.100 0.900 8 C -0.177 4.177 9 N -0.508 5.508 10 Si 0.674 3.326 11 H -0.215 1.215 12 H -0.208 1.208 13 H -0.209 1.209 14 C 0.043 3.957 15 C -0.096 4.096 16 C -0.093 4.093 17 C 0.003 3.997 18 O -0.222 6.222 19 C -0.070 4.070 20 C -0.133 4.133 21 N -0.210 5.210 22 C 0.106 3.894 23 F -0.098 7.098 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.055 0.945 35 H 0.147 0.853 36 H 0.195 0.805 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.116 0.884 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 3.235 -3.526 5.532 7.315 hybrid contribution 0.805 0.431 -0.984 1.343 sum 4.039 -3.095 4.548 6.825 Atomic orbital electron populations 1.21764 0.96692 1.00597 1.01587 1.21501 0.95096 0.98237 1.01284 1.22224 0.99132 0.94622 1.01760 1.21000 0.91477 0.85975 0.99910 1.44123 1.75211 1.08988 1.01923 1.19085 1.28505 1.05662 0.85674 0.89954 1.24508 1.00485 0.95587 0.97123 1.70176 1.37906 1.04201 1.38528 0.87095 0.85232 0.77801 0.82432 1.21527 1.20776 1.20891 1.20302 0.86021 1.02873 0.86484 1.21704 1.02671 0.90436 0.94830 1.21869 0.88434 1.02639 0.96349 1.20236 0.91770 0.88383 0.99312 1.86122 1.18872 1.36035 1.81167 1.23026 0.80924 1.03157 0.99888 1.22246 0.98963 0.88465 1.03646 1.66654 1.03284 1.32102 1.18930 1.18015 0.85850 0.84432 1.01102 1.91493 1.70035 1.55356 1.92898 0.93058 0.92998 0.93566 0.92566 0.92583 0.92860 0.92233 0.93555 0.93121 0.93020 0.94489 0.85323 0.80505 0.92781 0.92851 0.88414 0.82850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.91 37.16 0.37 -1.53 16 2 C -0.12 -1.79 5.93 -26.72 -0.16 -1.95 16 3 C -0.14 -2.44 5.54 -26.73 -0.15 -2.59 16 4 C 0.14 2.90 5.64 -4.04 -0.02 2.88 16 5 N -0.58 -13.75 2.53 -174.61 -0.44 -14.19 16 6 C -0.26 -6.80 9.53 -15.06 -0.14 -6.95 16 7 H 0.08 2.15 8.06 -52.48 -0.42 1.73 16 8 C 0.02 0.56 3.91 -17.43 -0.07 0.49 16 9 N -0.86 -21.99 8.21 55.49 0.46 -21.53 16 10 Si 0.85 20.72 29.69 -169.99 -5.05 15.67 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 14 C 0.17 3.85 5.03 -5.20 -0.03 3.83 16 15 C -0.09 -1.99 5.19 -104.42 -0.54 -2.54 16 16 C -0.07 -1.45 8.52 -39.15 -0.33 -1.78 16 17 C 0.05 0.98 6.71 -39.10 -0.26 0.71 16 18 O -0.31 -5.41 10.51 -19.62 -0.21 -5.62 16 19 C 0.03 0.30 9.82 101.05 0.99 1.29 16 20 C 0.02 0.43 10.22 -17.38 -0.18 0.26 16 21 N -0.49 -10.15 10.37 -13.48 -0.14 -10.29 16 22 C 0.26 5.63 8.36 -17.37 -0.15 5.48 16 23 F -0.12 -2.48 14.60 2.25 0.03 -2.44 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.05 0.95 8.04 -51.93 -0.42 0.54 16 32 H 0.05 1.01 5.83 -51.93 -0.30 0.71 16 33 H 0.26 6.38 7.74 -40.82 -0.32 6.06 16 34 H 0.04 0.78 7.89 -51.93 -0.41 0.37 16 35 H 0.13 3.16 5.43 -51.93 -0.28 2.88 16 36 H 0.18 4.10 4.91 -52.49 -0.26 3.84 16 37 H 0.05 0.54 7.68 -51.93 -0.40 0.14 16 38 H 0.05 0.58 7.67 -51.93 -0.40 0.18 16 39 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.15 2.19 6.31 -52.48 -0.33 1.85 16 LS Contribution 326.25 15.07 4.92 4.92 Total: -1.00 -27.72 326.25 -6.81 -34.53 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -5.72 Total: 1.34 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: -0.67 Total: -2.39 kcal Atomic # 7 Polarization: -45.88 SS G_CDS: -0.13 Total: -46.00 kcal Atomic # 8 Polarization: -5.41 SS G_CDS: -0.21 Total: -5.62 kcal Atomic # 9 Polarization: -2.48 SS G_CDS: 0.03 Total: -2.44 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.05 Total: 15.67 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -27.72 -6.81 -34.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238122749.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.890 kcal (2) G-P(sol) polarization free energy of solvation -27.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds