Wall clock time and date at job start Tue Mar 31 2020 05:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47355 * 2 1 4 4 C 1.52998 * 109.47355 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.47293 * 180.02562 * 4 3 2 6 6 C 1.36940 * 120.00400 * 89.99591 * 5 4 3 7 7 H 1.07997 * 119.99460 * 24.20351 * 6 5 4 8 8 C 1.38811 * 119.99987 * 203.92818 * 6 5 4 9 9 N 1.31630 * 119.99649 * 212.23688 * 8 6 5 10 10 Si 1.86797 * 120.00329 * 32.23527 * 8 6 5 11 11 H 1.48499 * 109.46947 * 357.53580 * 10 8 6 12 12 H 1.48500 * 109.46982 * 117.53661 * 10 8 6 13 13 H 1.48496 * 109.47006 * 237.53523 * 10 8 6 14 14 C 1.46502 * 120.00050 * 270.00049 * 5 4 3 15 15 C 1.50701 * 109.46969 * 275.56773 * 14 5 4 16 16 C 1.38140 * 120.36359 * 94.44277 * 15 14 5 17 17 N 1.31930 * 120.90819 * 180.02562 * 16 15 14 18 18 C 1.31981 * 121.74483 * 359.97438 * 17 16 15 19 19 F 1.35096 * 119.68346 * 180.02562 * 18 17 16 20 20 C 1.39017 * 120.62970 * 0.02562 * 18 17 16 21 21 O 1.35960 * 120.47980 * 179.97438 * 20 18 17 22 22 C 1.42908 * 116.99827 * 183.23799 * 21 20 18 23 23 C 1.38661 * 120.35867 * 274.16499 * 15 14 5 24 24 H 1.09004 * 109.46718 * 59.99544 * 1 2 3 25 25 H 1.08997 * 109.47228 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47206 * 300.00303 * 1 2 3 27 27 H 1.09001 * 109.47231 * 240.00485 * 2 1 3 28 28 H 1.08993 * 109.47405 * 120.00365 * 2 1 3 29 29 H 1.09001 * 109.46555 * 60.00071 * 3 2 1 30 30 H 1.08993 * 109.47162 * 300.00514 * 3 2 1 31 31 H 1.08997 * 109.47527 * 60.00085 * 4 3 2 32 32 H 1.09003 * 109.46996 * 299.99990 * 4 3 2 33 33 H 0.96997 * 119.99665 * 0.02562 * 9 8 6 34 34 H 1.08999 * 109.46948 * 35.56639 * 14 5 4 35 35 H 1.09001 * 109.47704 * 155.56583 * 14 5 4 36 36 H 1.07994 * 119.54534 * 0.02562 * 16 15 14 37 37 H 1.09000 * 109.46804 * 302.24866 * 22 21 20 38 38 H 1.08997 * 109.46759 * 62.24488 * 22 21 20 39 39 H 1.08996 * 109.46757 * 182.24506 * 22 21 20 40 40 H 1.07995 * 120.80386 * 359.97200 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0584 2.8236 0.0013 6 6 4.2861 3.4689 1.1874 7 1 4.4909 2.8989 2.0815 8 6 4.2593 4.8558 1.2394 9 7 5.0378 5.4979 2.0846 10 14 3.1186 5.8110 0.1099 11 1 2.3976 4.8657 -0.7800 12 1 2.1366 6.5702 0.9250 13 1 3.9147 6.7563 -0.7133 14 6 4.3031 3.5147 -1.2672 15 6 5.6805 3.1676 -1.7706 16 6 5.8553 2.1335 -2.6696 17 7 7.0563 1.8202 -3.1170 18 6 8.1344 2.4753 -2.7294 19 9 9.3440 2.1195 -3.2145 20 6 8.0372 3.5280 -1.8266 21 8 9.1499 4.2005 -1.4289 22 6 8.9736 5.2222 -0.4455 23 6 6.7855 3.8866 -1.3409 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9564 -0.8899 31 1 3.9338 0.9286 -0.8891 32 1 3.9330 0.9288 0.8909 33 1 5.6304 5.0019 2.6708 34 1 3.5591 3.2029 -2.0002 35 1 4.2330 4.5915 -1.1138 36 1 4.9971 1.5737 -3.0110 37 1 8.2626 5.9619 -0.8135 38 1 8.5931 4.7789 0.4747 39 1 9.9306 5.7050 -0.2476 40 1 6.6766 4.7030 -0.6423 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238449952.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:18 Heat of formation + Delta-G solvation = -29.809423 kcal Electronic energy + Delta-G solvation = -22748.106744 eV Core-core repulsion = 19285.686596 eV Total energy + Delta-G solvation = -3462.420148 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.54175 -40.22529 -38.08816 -36.70044 -34.42576 -32.30855 -31.52234 -30.38350 -28.37231 -27.35313 -25.76058 -24.02703 -22.92713 -22.13282 -21.07807 -20.04512 -18.09188 -17.57457 -17.37791 -16.95669 -16.15112 -15.34472 -14.95037 -14.80441 -14.58668 -14.49371 -14.31427 -13.73976 -13.48238 -13.14418 -12.95097 -12.73044 -12.38788 -12.27312 -12.18392 -11.80506 -11.49570 -11.25027 -11.16476 -10.84078 -10.78628 -10.62609 -10.45772 -10.04373 -9.91313 -9.63013 -9.42649 -9.04681 -8.57429 -8.01808 -7.27793 -6.54239 -3.41782 1.29082 1.47225 3.24419 3.27387 3.41500 3.49469 3.89365 4.01130 4.39175 4.79131 4.85787 4.97842 5.12117 5.27472 5.32408 5.37739 5.42696 5.44402 5.47944 5.48680 5.74795 5.79537 5.92378 6.03257 6.05434 6.14465 6.17766 6.21737 6.22773 6.29818 6.40041 6.51516 6.62755 6.71388 6.78533 6.95464 7.38643 7.87211 7.94722 8.23575 8.84220 9.43904 9.99221 10.86384 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.014075 B = 0.006611 C = 0.004957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.804684 B = 4234.614537 C = 5646.924129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C -0.139 4.139 4 C 0.150 3.850 5 N -0.592 5.592 6 C -0.354 4.354 7 H 0.068 0.932 8 C -0.006 4.006 9 N -0.899 5.899 10 Si 1.038 2.962 11 H -0.279 1.279 12 H -0.298 1.298 13 H -0.291 1.291 14 C 0.187 3.813 15 C -0.104 4.104 16 C 0.090 3.910 17 N -0.481 5.481 18 C 0.254 3.746 19 F -0.117 7.117 20 C 0.058 3.942 21 O -0.311 6.311 22 C 0.025 3.975 23 C -0.117 4.117 24 H 0.050 0.950 25 H 0.046 0.954 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.039 0.961 32 H 0.048 0.952 33 H 0.267 0.733 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.162 0.838 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.100 0.900 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.698 -4.119 -6.563 7.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.179 4.179 4 C 0.024 3.976 5 N -0.311 5.311 6 C -0.482 4.482 7 H 0.086 0.914 8 C -0.210 4.210 9 N -0.536 5.536 10 Si 0.869 3.131 11 H -0.205 1.205 12 H -0.227 1.227 13 H -0.219 1.219 14 C 0.060 3.940 15 C -0.110 4.110 16 C -0.068 4.068 17 N -0.195 5.195 18 C 0.099 3.901 19 F -0.096 7.096 20 C 0.009 3.991 21 O -0.223 6.223 22 C -0.070 4.070 23 C -0.144 4.144 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.179 0.821 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.119 0.881 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -0.832 -3.300 -7.559 8.290 hybrid contribution 0.454 -0.773 1.237 1.527 sum -0.379 -4.073 -6.322 7.531 Atomic orbital electron populations 1.21765 0.96585 1.00716 1.01659 1.21500 0.95244 0.98057 1.01283 1.22198 0.98827 0.94854 1.02037 1.20904 0.91486 0.86073 0.99178 1.44176 1.74072 1.11460 1.01417 1.20088 1.48917 0.91194 0.88034 0.91401 1.25999 0.99426 0.93847 1.01697 1.70900 1.20449 1.38098 1.24114 0.84152 0.77768 0.75300 0.75898 1.20501 1.22651 1.21861 1.20135 0.88712 0.96799 0.88314 1.22016 0.99903 0.95075 0.93961 1.22208 0.92464 0.96326 0.95763 1.66975 0.98591 1.27971 1.26006 1.17274 0.81777 0.93964 0.97057 1.91564 1.39669 1.91452 1.86899 1.19789 0.87830 0.94131 0.97349 1.86078 1.29562 1.49261 1.57422 1.23155 1.03594 0.89434 0.90784 1.21705 0.89899 1.02117 1.00644 0.93052 0.93471 0.92904 0.92626 0.92495 0.91749 0.92896 0.94223 0.93409 0.92293 0.92318 0.92233 0.82115 0.92172 0.91713 0.88125 0.82791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.91 37.16 0.37 -1.40 16 2 C -0.12 -1.62 5.93 -26.73 -0.16 -1.78 16 3 C -0.14 -2.28 5.54 -26.73 -0.15 -2.43 16 4 C 0.15 2.74 5.69 -4.05 -0.02 2.71 16 5 N -0.59 -12.68 2.27 -174.61 -0.40 -13.08 16 6 C -0.35 -8.94 9.81 -15.06 -0.15 -9.09 16 7 H 0.07 1.89 8.05 -52.49 -0.42 1.46 16 8 C -0.01 -0.16 5.20 -17.43 -0.09 -0.25 16 9 N -0.90 -24.87 13.71 55.49 0.76 -24.11 16 10 Si 1.04 23.59 25.60 -169.99 -4.35 19.24 16 11 H -0.28 -5.84 6.21 56.52 0.35 -5.49 16 12 H -0.30 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 14 C 0.19 3.66 4.13 -5.19 -0.02 3.64 16 15 C -0.10 -1.93 5.47 -104.50 -0.57 -2.50 16 16 C 0.09 1.54 10.76 -17.55 -0.19 1.35 16 17 N -0.48 -8.87 10.37 -13.48 -0.14 -9.01 16 18 C 0.25 4.80 8.43 -17.20 -0.14 4.66 16 19 F -0.12 -2.16 17.14 2.25 0.04 -2.12 16 20 C 0.06 1.08 6.71 -39.02 -0.26 0.82 16 21 O -0.31 -5.40 10.37 -19.61 -0.20 -5.60 16 22 C 0.03 0.37 9.86 101.05 1.00 1.36 16 23 C -0.12 -2.24 8.85 -39.15 -0.35 -2.58 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.04 0.65 8.00 -51.93 -0.42 0.24 16 32 H 0.05 0.92 8.03 -51.93 -0.42 0.50 16 33 H 0.27 7.40 8.73 -40.82 -0.36 7.05 16 34 H 0.06 1.00 8.03 -51.93 -0.42 0.58 16 35 H 0.06 1.25 2.90 -51.93 -0.15 1.10 16 36 H 0.16 2.26 8.06 -52.49 -0.42 1.84 16 37 H 0.06 0.85 7.41 -51.93 -0.38 0.47 16 38 H 0.06 1.01 7.96 -51.93 -0.41 0.59 16 39 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.15 3.12 6.44 -52.49 -0.34 2.79 16 LS Contribution 334.91 15.07 5.05 5.05 Total: -1.00 -27.75 334.91 -5.95 -33.70 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -5.97 Total: 1.43 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: -0.74 Total: -5.49 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: 0.22 Total: -46.20 kcal Atomic # 8 Polarization: -5.40 SS G_CDS: -0.20 Total: -5.60 kcal Atomic # 9 Polarization: -2.16 SS G_CDS: 0.04 Total: -2.12 kcal Atomic # 14 Polarization: 23.59 SS G_CDS: -4.35 Total: 19.24 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -27.75 -5.95 -33.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238449952.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.893 kcal (2) G-P(sol) polarization free energy of solvation -27.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds