Wall clock time and date at job start Tue Mar 31 2020 05:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46881 * 2 1 4 4 N 1.46904 * 109.47171 * 180.74614 * 3 2 1 5 5 C 1.46893 * 110.99942 * 299.23868 * 4 3 2 6 6 C 1.50700 * 109.47322 * 294.04886 * 5 4 3 7 7 H 1.08006 * 119.99936 * 355.06647 * 6 5 4 8 8 C 1.37874 * 120.00578 * 175.07259 * 6 5 4 9 9 N 1.31516 * 119.99651 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00255 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47104 * 60.00050 * 10 8 6 12 12 H 1.48503 * 109.47339 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47460 * 299.99689 * 10 8 6 14 14 C 1.46903 * 110.99579 * 63.18728 * 4 3 2 15 15 C 1.50704 * 109.47082 * 66.05055 * 14 4 3 16 16 C 1.38138 * 120.36459 * 89.99340 * 15 14 4 17 17 N 1.31934 * 120.91036 * 180.02562 * 16 15 14 18 18 C 1.31983 * 121.74164 * 359.97438 * 17 16 15 19 19 F 1.35091 * 119.68205 * 179.97438 * 18 17 16 20 20 C 1.39021 * 120.62880 * 359.97438 * 18 17 16 21 21 O 1.35960 * 120.47997 * 180.02562 * 20 18 17 22 22 C 1.42893 * 117.00213 * 179.97438 * 21 20 18 23 23 C 1.38659 * 120.35964 * 270.25474 * 15 14 4 24 24 H 1.09002 * 109.47197 * 300.00467 * 1 2 3 25 25 H 1.09003 * 109.47168 * 60.00000 * 1 2 3 26 26 H 1.09002 * 109.47161 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46954 * 240.00016 * 2 1 3 28 28 H 1.08995 * 109.47050 * 119.99746 * 2 1 3 29 29 H 1.09001 * 109.47101 * 60.75056 * 3 2 1 30 30 H 1.09001 * 109.47353 * 300.74823 * 3 2 1 31 31 H 1.08997 * 109.47490 * 54.04712 * 5 4 3 32 32 H 1.08998 * 109.47296 * 174.04760 * 5 4 3 33 33 H 0.97005 * 119.99979 * 180.02562 * 9 8 6 34 34 H 1.09000 * 109.47420 * 306.05000 * 14 4 3 35 35 H 1.09000 * 109.47086 * 186.04849 * 14 4 3 36 36 H 1.07997 * 119.54231 * 0.02562 * 16 15 14 37 37 H 1.08995 * 109.47449 * 59.99629 * 22 21 20 38 38 H 1.08998 * 109.46965 * 299.99552 * 22 21 20 39 39 H 1.09000 * 109.47273 * 179.97438 * 22 21 20 40 40 H 1.07999 * 120.80207 * 0.02562 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5089 1.4426 -0.0180 5 6 4.0500 0.7676 1.1691 6 6 3.7045 1.5640 2.4010 7 1 3.2096 2.5192 2.3053 8 6 4.0203 1.0734 3.6502 9 7 4.6226 -0.0899 3.7668 10 14 3.5927 2.0609 5.1770 11 1 2.1238 2.2714 5.2351 12 1 4.0341 1.3197 6.3858 13 1 4.2795 3.3764 5.1243 14 6 4.0202 0.8293 -1.2511 15 6 3.6471 1.6886 -2.4316 16 6 4.4926 2.6942 -2.8583 17 7 4.1766 3.4531 -3.8902 18 6 3.0487 3.2865 -4.5551 19 9 2.7666 4.0879 -5.6054 20 6 2.1483 2.2941 -4.1848 21 8 0.9875 2.1247 -4.8722 22 6 0.1168 1.0823 -4.4283 23 6 2.4489 1.4819 -3.0980 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6876 1.9524 0.8966 30 1 1.6657 1.9602 -0.8832 31 1 3.6179 -0.2299 1.2485 32 1 5.1334 0.6883 1.0798 33 1 4.8445 -0.4353 4.6457 34 1 3.5844 -0.1625 -1.3715 35 1 5.1053 0.7446 -1.1919 36 1 5.4253 2.8614 -2.3401 37 1 -0.1788 1.2706 -3.3962 38 1 0.6353 0.1255 -4.4889 39 1 -0.7704 1.0559 -5.0609 40 1 1.7673 0.7058 -2.7826 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238460448.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:55 Heat of formation + Delta-G solvation = -42.578973 kcal Electronic energy + Delta-G solvation = -22631.757785 eV Core-core repulsion = 19168.783908 eV Total energy + Delta-G solvation = -3462.973878 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.83748 -40.68813 -38.53355 -37.46018 -33.10416 -32.87437 -31.69278 -30.64739 -27.92124 -27.20916 -26.27159 -24.20805 -23.35439 -22.24715 -22.01893 -19.49039 -18.20270 -17.77003 -17.43766 -16.53533 -16.27921 -15.32362 -15.26010 -15.03568 -14.83711 -14.48411 -14.42473 -13.96996 -13.56941 -13.29949 -13.20449 -12.83076 -12.58924 -12.17473 -12.00176 -11.70303 -11.56265 -11.42713 -11.16847 -11.05821 -10.97522 -10.76920 -10.60812 -10.10683 -9.87111 -9.77236 -9.58108 -9.28005 -8.49217 -8.34247 -7.31694 -6.08809 -4.10062 0.94062 1.07752 2.85102 3.29688 3.34321 3.37241 3.55178 3.67906 4.37360 4.41360 4.49906 4.87237 4.90458 4.92550 5.00429 5.05992 5.23748 5.27188 5.36578 5.40921 5.63345 5.68907 5.70379 5.72439 5.91556 5.96763 6.12824 6.25056 6.27357 6.33176 6.37083 6.61049 6.81526 6.99922 7.18509 7.30595 7.65843 7.72177 7.97130 8.07286 8.43954 8.97334 9.54516 11.01640 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.021915 B = 0.004466 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.355749 B = 6268.352995 C = 6935.176025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.165 4.165 3 C 0.063 3.937 4 N -0.528 5.528 5 C 0.189 3.811 6 C -0.507 4.507 7 H 0.062 0.938 8 C 0.058 3.942 9 N -0.898 5.898 10 Si 0.896 3.104 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.276 1.276 14 C 0.087 3.913 15 C -0.078 4.078 16 C 0.115 3.885 17 N -0.477 5.477 18 C 0.269 3.731 19 F -0.112 7.112 20 C 0.055 3.945 21 O -0.306 6.306 22 C 0.024 3.976 23 C -0.135 4.135 24 H 0.056 0.944 25 H 0.043 0.957 26 H 0.047 0.953 27 H 0.049 0.951 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.050 0.950 31 H 0.005 0.995 32 H 0.027 0.973 33 H 0.262 0.738 34 H 0.044 0.956 35 H 0.086 0.914 36 H 0.173 0.827 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.104 0.896 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.044 -0.720 -14.101 15.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.204 4.204 3 C -0.066 4.066 4 N -0.251 5.251 5 C 0.065 3.935 6 C -0.545 4.545 7 H 0.080 0.920 8 C -0.144 4.144 9 N -0.538 5.538 10 Si 0.724 3.276 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.201 1.201 14 C -0.042 4.042 15 C -0.080 4.080 16 C -0.042 4.042 17 N -0.191 5.191 18 C 0.114 3.886 19 F -0.091 7.091 20 C 0.006 3.994 21 O -0.219 6.219 22 C -0.071 4.071 23 C -0.162 4.162 24 H 0.075 0.925 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.099 0.901 29 H 0.102 0.898 30 H 0.069 0.931 31 H 0.023 0.977 32 H 0.045 0.955 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.104 0.896 36 H 0.190 0.810 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.122 0.878 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -6.328 0.434 -14.416 15.750 hybrid contribution -1.174 -1.093 1.160 1.979 sum -7.501 -0.659 -13.256 15.246 Atomic orbital electron populations 1.21667 0.96430 1.00794 1.01239 1.22198 0.95570 1.00338 1.02273 1.22108 0.88417 0.94454 1.01582 1.62426 1.06625 1.54659 1.01388 1.19820 0.95052 0.93054 0.85579 1.21070 1.38538 1.05041 0.89880 0.91976 1.24949 0.95311 0.95044 0.99073 1.69938 1.41476 1.18387 1.23986 0.86591 0.78758 0.80160 0.82099 1.20332 1.21377 1.20133 1.21046 1.01110 0.93835 0.88219 1.20911 0.93382 0.97105 0.96649 1.22392 1.00318 0.90359 0.91127 1.67130 1.15723 1.27640 1.08560 1.17399 0.91349 0.90668 0.89188 1.91597 1.92548 1.71864 1.53064 1.19704 0.88309 0.96984 0.94404 1.86138 1.27880 1.53743 1.54109 1.23156 0.93207 0.89348 1.01385 1.21609 0.98720 1.00900 0.94949 0.92499 0.93829 0.93425 0.93273 0.90123 0.89842 0.93142 0.97735 0.95469 0.92851 0.93854 0.89584 0.81007 0.92156 0.92395 0.87803 0.83500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.91 37.16 0.37 -1.49 16 2 C -0.16 -2.60 5.22 -26.73 -0.14 -2.74 16 3 C 0.06 1.10 4.81 -3.82 -0.02 1.08 16 4 N -0.53 -10.17 4.69 -237.52 -1.12 -11.28 16 5 C 0.19 4.48 4.49 -4.98 -0.02 4.46 16 6 C -0.51 -13.38 8.40 -34.44 -0.29 -13.67 16 7 H 0.06 1.65 7.29 -52.48 -0.38 1.27 16 8 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -25.47 13.29 55.43 0.74 -24.73 16 10 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 14 C 0.09 1.35 4.95 -4.97 -0.02 1.32 16 15 C -0.08 -1.10 4.90 -104.50 -0.51 -1.61 16 16 C 0.12 1.66 10.85 -17.54 -0.19 1.47 16 17 N -0.48 -7.50 10.37 -13.48 -0.14 -7.64 16 18 C 0.27 4.14 8.43 -17.20 -0.14 4.00 16 19 F -0.11 -1.74 17.14 2.25 0.04 -1.70 16 20 C 0.05 0.76 6.71 -39.02 -0.26 0.49 16 21 O -0.31 -3.82 10.37 -19.62 -0.20 -4.02 16 22 C 0.02 0.20 9.83 101.05 0.99 1.19 16 23 C -0.14 -1.75 7.03 -39.16 -0.28 -2.03 16 24 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.70 5.77 -51.93 -0.30 0.40 16 28 H 0.08 1.54 6.33 -51.93 -0.33 1.22 16 29 H 0.08 1.66 6.93 -51.93 -0.36 1.30 16 30 H 0.05 0.80 5.94 -51.93 -0.31 0.50 16 31 H 0.00 0.12 6.04 -51.93 -0.31 -0.19 16 32 H 0.03 0.69 7.93 -51.93 -0.41 0.28 16 33 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 34 H 0.04 0.65 6.04 -51.93 -0.31 0.33 16 35 H 0.09 1.30 7.88 -51.93 -0.41 0.89 16 36 H 0.17 2.20 8.06 -52.49 -0.42 1.78 16 37 H 0.06 0.48 7.68 -51.93 -0.40 0.08 16 38 H 0.06 0.42 7.71 -51.93 -0.40 0.02 16 39 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.15 1.65 5.81 -52.49 -0.31 1.35 16 LS Contribution 328.03 15.07 4.94 4.94 Total: -1.00 -29.29 328.03 -6.86 -36.15 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -5.48 Total: -1.63 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: -0.61 Total: -6.05 kcal Atomic # 7 Polarization: -43.13 SS G_CDS: -0.52 Total: -43.65 kcal Atomic # 8 Polarization: -3.82 SS G_CDS: -0.20 Total: -4.02 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 0.04 Total: -1.70 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.29 -6.86 -36.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238460448.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.429 kcal (2) G-P(sol) polarization free energy of solvation -29.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds