Wall clock time and date at job start Tue Mar 31 2020 05:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46959 * 2 1 4 4 O 1.42894 * 109.47227 * 239.99524 * 2 1 3 5 5 C 1.35961 * 117.00012 * 205.05256 * 4 2 1 6 6 C 1.38959 * 120.48314 * 354.45962 * 5 4 2 7 7 C 1.38661 * 118.40624 * 179.71332 * 6 5 4 8 8 C 1.50697 * 120.36375 * 180.28353 * 7 6 5 9 9 N 1.46907 * 109.47056 * 270.29740 * 8 7 6 10 10 C 1.46895 * 111.00072 * 293.95369 * 9 8 7 11 11 C 1.46902 * 110.99811 * 169.99687 * 9 8 7 12 12 C 1.50703 * 109.47050 * 190.00246 * 11 9 8 13 13 H 1.08000 * 119.99526 * 0.02562 * 12 11 9 14 14 C 1.37876 * 119.99750 * 180.02562 * 12 11 9 15 15 N 1.31511 * 120.00170 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99701 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.46985 * 89.99713 * 16 14 12 18 18 H 1.48499 * 109.47071 * 209.99531 * 16 14 12 19 19 H 1.48500 * 109.46971 * 329.99667 * 16 14 12 20 20 C 1.38136 * 119.27267 * 0.58169 * 7 6 5 21 21 N 1.31932 * 120.90905 * 359.67850 * 20 7 6 22 22 C 1.31975 * 121.74687 * 0.02562 * 21 20 7 23 23 F 1.35094 * 119.68865 * 179.97438 * 22 21 20 24 24 H 1.09008 * 109.47098 * 60.00001 * 1 2 3 25 25 H 1.09002 * 109.47216 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47093 * 300.00529 * 1 2 3 27 27 H 1.09004 * 109.46641 * 119.99425 * 2 1 3 28 28 H 1.08997 * 109.47288 * 59.99847 * 3 2 1 29 29 H 1.09006 * 109.46791 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.46970 * 299.99400 * 3 2 1 31 31 H 1.08001 * 120.79787 * 359.97438 * 6 5 4 32 32 H 1.08998 * 109.47153 * 30.29811 * 8 7 6 33 33 H 1.08997 * 109.47413 * 150.30251 * 8 7 6 34 34 H 1.09005 * 109.47129 * 60.00223 * 10 9 8 35 35 H 1.09001 * 109.46975 * 179.97438 * 10 9 8 36 36 H 1.08996 * 109.47437 * 299.99580 * 10 9 8 37 37 H 1.09005 * 109.47530 * 310.00379 * 11 9 8 38 38 H 1.09004 * 109.46565 * 70.00551 * 11 9 8 39 39 H 0.97004 * 119.99558 * 180.02562 * 15 14 12 40 40 H 1.07998 * 119.54553 * 179.70940 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 3.2468 -1.2260 -1.0973 6 6 4.0442 -1.0295 0.0236 7 6 5.2996 -1.6177 0.0514 8 6 6.1984 -1.4387 1.2477 9 7 7.0297 -0.2420 1.0609 10 6 7.9665 -0.4209 -0.0564 11 6 7.7446 0.1007 2.2977 12 6 8.3867 1.4558 2.1478 13 1 8.2745 2.0074 1.2261 14 6 9.1173 1.9912 3.1873 15 7 9.2534 1.3196 4.3097 16 14 9.9138 3.6706 3.0012 17 1 8.9665 4.7207 3.4543 18 1 11.1474 3.7275 3.8260 19 1 10.2607 3.8986 1.5754 20 6 5.7198 -2.3643 -1.0322 21 7 4.9416 -2.5283 -2.0849 22 6 3.7380 -1.9908 -2.1492 23 9 2.9762 -2.1852 -3.2478 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5138 0.8901 28 1 1.6766 1.9564 0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 3.6930 -0.4364 0.8551 32 1 5.5903 -1.3223 2.1448 33 1 6.8398 -2.3135 1.3544 34 1 7.4071 -0.6044 -0.9737 35 1 8.5692 0.4798 -0.1729 36 1 8.6180 -1.2704 0.1482 37 1 7.0411 0.1220 3.1300 38 1 8.5141 -0.6467 2.4914 39 1 9.7671 1.6965 5.0412 40 1 6.6986 -2.8204 -1.0173 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238590124.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:02 Heat of formation + Delta-G solvation = -44.218048 kcal Electronic energy + Delta-G solvation = -22209.907217 eV Core-core repulsion = 18746.862264 eV Total energy + Delta-G solvation = -3463.044953 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.82039 -40.74945 -38.80682 -36.64866 -33.51573 -33.06225 -32.05187 -30.22924 -27.52642 -27.28923 -26.83775 -24.53178 -23.98766 -22.02699 -21.29591 -20.38374 -18.34775 -17.70752 -17.46053 -16.40539 -16.32005 -15.23644 -15.06763 -14.88783 -14.60457 -14.50080 -14.21979 -14.00987 -13.47667 -13.20955 -13.02661 -12.94400 -12.55270 -12.44840 -12.09787 -12.05029 -11.92190 -11.57628 -11.24626 -11.13262 -11.01321 -10.95173 -10.74676 -10.54539 -10.05191 -9.74236 -9.54656 -9.27420 -8.51491 -8.32716 -7.39919 -6.10184 -4.11791 0.94541 1.10082 2.80027 3.27633 3.34051 3.37508 3.53771 3.67505 4.36664 4.42773 4.46313 4.60131 4.74368 4.80442 4.91605 4.96944 5.14727 5.26624 5.32750 5.42963 5.52033 5.54124 5.60586 5.71504 5.76688 5.87122 5.96225 6.03250 6.07980 6.17953 6.31758 6.37698 6.67661 7.09842 7.14830 7.22132 7.63172 7.69695 7.95023 8.06529 8.42188 8.95598 9.52914 11.00596 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.018423 B = 0.004185 C = 0.003689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.509739 B = 6689.740640 C = 7588.198680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.074 3.926 3 C -0.183 4.183 4 O -0.300 6.300 5 C 0.064 3.936 6 C -0.123 4.123 7 C -0.078 4.078 8 C 0.091 3.909 9 N -0.534 5.534 10 C 0.032 3.968 11 C 0.193 3.807 12 C -0.509 4.509 13 H 0.064 0.936 14 C 0.057 3.943 15 N -0.898 5.898 16 Si 0.898 3.102 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.273 1.273 20 C 0.098 3.902 21 N -0.477 5.477 22 C 0.266 3.734 23 F -0.112 7.112 24 H 0.067 0.933 25 H 0.064 0.936 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.153 0.847 32 H 0.082 0.918 33 H 0.043 0.957 34 H 0.046 0.954 35 H 0.077 0.923 36 H 0.015 0.985 37 H 0.031 0.969 38 H -0.006 1.006 39 H 0.262 0.738 40 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.176 -5.092 -7.088 16.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.018 3.982 3 C -0.241 4.241 4 O -0.213 6.213 5 C 0.015 3.985 6 C -0.150 4.150 7 C -0.081 4.081 8 C -0.038 4.038 9 N -0.259 5.259 10 C -0.117 4.117 11 C 0.068 3.932 12 C -0.547 4.547 13 H 0.082 0.918 14 C -0.145 4.145 15 N -0.538 5.538 16 Si 0.726 3.274 17 H -0.206 1.206 18 H -0.213 1.213 19 H -0.198 1.198 20 C -0.059 4.059 21 N -0.191 5.191 22 C 0.111 3.889 23 F -0.091 7.091 24 H 0.086 0.914 25 H 0.083 0.917 26 H 0.097 0.903 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.170 0.830 32 H 0.101 0.899 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.096 0.904 36 H 0.034 0.966 37 H 0.049 0.951 38 H 0.012 0.988 39 H 0.071 0.929 40 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -14.295 -5.164 -7.913 17.135 hybrid contribution 0.717 0.788 0.879 1.381 sum -13.578 -4.377 -7.033 15.905 Atomic orbital electron populations 1.21852 0.92187 1.03152 1.03232 1.22560 0.95557 0.93044 0.86989 1.22410 1.02996 0.95360 1.03307 1.86188 1.27856 1.68029 1.39247 1.19688 0.87251 0.96547 0.95063 1.21594 0.94272 1.01182 0.97942 1.20906 0.94422 0.95129 0.97623 1.21013 0.95146 0.93933 0.93708 1.62193 1.24656 1.30539 1.08505 1.22317 0.94920 1.01079 0.93347 1.19774 0.92158 0.96042 0.85199 1.21133 1.30939 1.02182 1.00484 0.91825 1.24973 0.96476 0.97857 0.95183 1.69950 1.41319 1.38079 1.04420 0.86499 0.78756 0.84056 0.78118 1.20615 1.21271 1.19827 1.22342 0.98521 0.97640 0.87447 1.67061 1.02840 1.21151 1.28005 1.17375 0.88743 0.98971 0.83859 1.91596 1.72780 1.93599 1.51111 0.91373 0.91676 0.90254 0.90592 0.90604 0.91094 0.91401 0.82958 0.89915 0.93941 0.93533 0.90442 0.96641 0.95114 0.98819 0.92853 0.81674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.56 37.16 0.36 -0.79 16 2 C 0.07 0.75 2.85 -26.73 -0.08 0.67 16 3 C -0.18 -1.83 9.19 37.16 0.34 -1.49 16 4 O -0.30 -3.94 9.68 -19.62 -0.19 -4.13 16 5 C 0.06 0.90 6.63 -39.02 -0.26 0.64 16 6 C -0.12 -1.69 8.03 -39.16 -0.31 -2.00 16 7 C -0.08 -1.13 4.89 -104.50 -0.51 -1.64 16 8 C 0.09 1.45 5.14 -4.97 -0.03 1.43 16 9 N -0.53 -10.67 4.74 -245.82 -1.17 -11.84 16 10 C 0.03 0.59 8.96 60.06 0.54 1.13 16 11 C 0.19 4.72 4.72 -4.97 -0.02 4.70 16 12 C -0.51 -13.71 8.46 -34.44 -0.29 -14.00 16 13 H 0.06 1.71 7.12 -52.49 -0.37 1.34 16 14 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 15 N -0.90 -25.81 13.29 55.43 0.74 -25.07 16 16 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 19 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 20 C 0.10 1.39 9.14 -17.55 -0.16 1.23 16 21 N -0.48 -7.44 10.37 -13.48 -0.14 -7.58 16 22 C 0.27 4.12 8.43 -17.20 -0.14 3.98 16 23 F -0.11 -1.76 17.14 2.25 0.04 -1.72 16 24 H 0.07 0.53 8.14 -51.92 -0.42 0.10 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.08 0.71 6.35 -51.93 -0.33 0.38 16 28 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.84 6.94 -51.93 -0.36 0.48 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.15 1.88 5.59 -52.49 -0.29 1.59 16 32 H 0.08 1.28 7.89 -51.93 -0.41 0.87 16 33 H 0.04 0.65 8.07 -51.93 -0.42 0.23 16 34 H 0.05 0.77 6.17 -51.93 -0.32 0.45 16 35 H 0.08 1.57 6.76 -51.93 -0.35 1.21 16 36 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.03 0.79 7.93 -51.93 -0.41 0.38 16 38 H -0.01 -0.16 8.12 -51.93 -0.42 -0.58 16 39 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 40 H 0.17 2.03 8.03 -52.49 -0.42 1.61 16 LS Contribution 333.66 15.07 5.03 5.03 Total: -1.00 -29.82 333.66 -7.17 -36.98 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: -5.78 Total: -3.04 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: -0.67 Total: -4.69 kcal Atomic # 7 Polarization: -43.92 SS G_CDS: -0.57 Total: -44.49 kcal Atomic # 8 Polarization: -3.94 SS G_CDS: -0.19 Total: -4.13 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.04 Total: -1.72 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.82 -7.17 -36.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238590124.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.237 kcal (2) G-P(sol) polarization free energy of solvation -29.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds