Wall clock time and date at job start Tue Mar 31 2020 05:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47106 * 2 1 4 4 O 1.42893 * 109.47294 * 120.00200 * 2 1 3 5 5 C 1.35725 * 117.00109 * 149.99563 * 4 2 1 6 6 C 1.38893 * 119.65687 * 179.97438 * 5 4 2 7 7 C 1.38378 * 119.13735 * 179.97438 * 6 5 4 8 8 C 1.50705 * 120.76797 * 180.02562 * 7 6 5 9 9 N 1.46907 * 109.47037 * 104.99990 * 8 7 6 10 10 C 1.46903 * 111.00017 * 293.95441 * 9 8 7 11 11 C 1.46900 * 110.99907 * 170.00256 * 9 8 7 12 12 C 1.50700 * 109.47082 * 190.00336 * 11 9 8 13 13 H 1.08003 * 119.99546 * 359.97438 * 12 11 9 14 14 C 1.37875 * 120.00247 * 179.97438 * 12 11 9 15 15 N 1.31516 * 119.99507 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00261 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46859 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.46962 * 120.00251 * 16 14 12 19 19 H 1.48495 * 109.47441 * 240.00044 * 16 14 12 20 20 C 1.38993 * 118.46588 * 0.02562 * 7 6 5 21 21 F 1.35105 * 120.38206 * 180.02562 * 20 7 6 22 22 C 1.38250 * 119.24092 * 0.02562 * 20 7 6 23 23 N 1.31987 * 120.79873 * 359.73565 * 22 20 7 24 24 H 1.09004 * 109.46706 * 300.00038 * 1 2 3 25 25 H 1.09008 * 109.47235 * 59.99295 * 1 2 3 26 26 H 1.08997 * 109.47350 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46706 * 239.99962 * 2 1 3 28 28 H 1.08997 * 109.46624 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.47126 * 299.99952 * 3 2 1 30 30 H 1.08999 * 109.46934 * 60.00207 * 3 2 1 31 31 H 1.08001 * 120.42931 * 0.02562 * 6 5 4 32 32 H 1.08993 * 109.46980 * 224.99758 * 8 7 6 33 33 H 1.08997 * 109.46879 * 345.00516 * 8 7 6 34 34 H 1.09002 * 109.46915 * 60.00248 * 10 9 8 35 35 H 1.08993 * 109.47108 * 180.02562 * 10 9 8 36 36 H 1.09006 * 109.46922 * 300.00267 * 10 9 8 37 37 H 1.09006 * 109.46673 * 309.99780 * 11 9 8 38 38 H 1.08998 * 109.47337 * 70.00002 * 11 9 8 39 39 H 0.97003 * 119.99856 * 180.02562 * 15 14 12 40 40 H 1.08001 * 119.60412 * 180.02562 * 22 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 3.1991 -1.3133 1.0651 6 6 3.7144 -1.9855 2.1658 7 6 4.9311 -2.6344 2.0501 8 6 5.5241 -3.3754 3.2208 9 7 5.3683 -4.8216 3.0147 10 6 3.9510 -5.2072 3.0385 11 6 6.1373 -5.5810 4.0096 12 6 6.1557 -7.0380 3.6250 13 1 5.6466 -7.3669 2.7311 14 6 6.8223 -7.9510 4.4143 15 7 7.4426 -7.5502 5.5026 16 14 6.8445 -9.7571 3.9380 17 1 6.0788 -9.9466 2.6798 18 1 8.2478 -10.1980 3.7341 19 1 6.2251 -10.5623 5.0211 20 6 5.5937 -2.5870 0.8292 21 9 6.7837 -3.2075 0.6731 22 6 5.0212 -1.8977 -0.2236 23 7 3.8566 -1.2930 -0.0818 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5140 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1722 -2.0022 3.0997 32 1 6.5832 -3.1325 3.3058 33 1 5.0092 -3.0813 4.1354 34 1 3.4182 -4.6818 2.2459 35 1 3.8644 -6.2826 2.8840 36 1 3.5189 -4.9431 4.0038 37 1 7.1587 -5.2019 4.0459 38 1 5.6734 -5.4697 4.9896 39 1 7.9120 -8.1925 6.0577 40 1 5.5308 -1.8575 -1.1750 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238793566.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:57 Heat of formation + Delta-G solvation = -47.664420 kcal Electronic energy + Delta-G solvation = -22051.688000 eV Core-core repulsion = 18588.493601 eV Total energy + Delta-G solvation = -3463.194399 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -48.51926 -40.69525 -38.39862 -36.65414 -33.42159 -33.19706 -32.03989 -29.71486 -27.64381 -27.47777 -26.94218 -24.43847 -23.44980 -22.65674 -21.07358 -20.28252 -18.20529 -17.34199 -17.17165 -16.34366 -15.98139 -15.35471 -15.15866 -14.83125 -14.60447 -14.20208 -14.00408 -13.93708 -13.62912 -13.40082 -13.12869 -12.68161 -12.52575 -12.43759 -12.12894 -12.03352 -11.92661 -11.45264 -11.22523 -11.09367 -10.93277 -10.87644 -10.68276 -10.52128 -9.96433 -9.67662 -9.59172 -9.21941 -8.45662 -8.28950 -7.35397 -6.04481 -4.05587 1.01109 1.14064 2.87896 3.30822 3.38243 3.43390 3.60211 4.13765 4.29658 4.41919 4.62963 4.73126 4.76010 4.86912 4.94671 5.04017 5.17017 5.29051 5.32055 5.47915 5.50370 5.56687 5.58816 5.69297 5.83322 5.88091 5.94615 5.99025 6.10657 6.17899 6.31327 6.50185 6.70127 7.18493 7.21475 7.26816 7.69107 7.75456 8.01378 8.12062 8.47750 9.01694 9.58563 11.06552 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.030252 B = 0.003497 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.324053 B = 8003.917678 C = 8324.895370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.081 3.919 3 C -0.168 4.168 4 O -0.301 6.301 5 C 0.308 3.692 6 C -0.160 4.160 7 C -0.021 4.021 8 C 0.088 3.912 9 N -0.532 5.532 10 C 0.036 3.964 11 C 0.193 3.807 12 C -0.506 4.506 13 H 0.064 0.936 14 C 0.055 3.945 15 N -0.899 5.899 16 Si 0.899 3.101 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.285 1.285 20 C 0.038 3.962 21 F -0.118 7.118 22 C 0.104 3.896 23 N -0.521 5.521 24 H 0.064 0.936 25 H 0.075 0.925 26 H 0.063 0.937 27 H 0.089 0.911 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.146 0.854 32 H 0.088 0.912 33 H 0.044 0.956 34 H 0.043 0.957 35 H 0.077 0.923 36 H 0.014 0.986 37 H 0.032 0.968 38 H -0.006 1.006 39 H 0.261 0.739 40 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.423 16.417 -10.152 21.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.024 3.976 3 C -0.226 4.226 4 O -0.209 6.209 5 C 0.130 3.870 6 C -0.182 4.182 7 C -0.030 4.030 8 C -0.040 4.040 9 N -0.256 5.256 10 C -0.113 4.113 11 C 0.069 3.931 12 C -0.544 4.544 13 H 0.082 0.918 14 C -0.146 4.146 15 N -0.538 5.538 16 Si 0.726 3.274 17 H -0.196 1.196 18 H -0.210 1.210 19 H -0.211 1.211 20 C 0.016 3.984 21 F -0.096 7.096 22 C -0.052 4.052 23 N -0.245 5.245 24 H 0.083 0.917 25 H 0.094 0.906 26 H 0.083 0.917 27 H 0.107 0.893 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.164 0.836 32 H 0.107 0.893 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.096 0.904 36 H 0.033 0.967 37 H 0.050 0.950 38 H 0.011 0.989 39 H 0.071 0.929 40 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -10.639 16.675 -10.940 22.604 hybrid contribution 0.378 -1.276 1.124 1.742 sum -10.261 15.399 -9.816 20.947 Atomic orbital electron populations 1.21908 0.92978 1.03067 1.02844 1.22325 0.94378 0.92683 0.88165 1.22216 1.02188 0.95713 1.02438 1.86302 1.31586 1.64549 1.38423 1.19676 0.86436 0.91243 0.89690 1.20893 0.96368 1.01445 0.99454 1.20402 0.92915 0.94291 0.95385 1.21021 1.00800 0.90440 0.91718 1.62184 1.09851 1.00543 1.53036 1.22262 0.88709 1.02357 0.97969 1.19776 0.92701 0.93025 0.87617 1.21167 1.32838 0.91404 1.09038 0.91753 1.24984 0.95440 0.99219 0.94977 1.69967 1.34703 1.34570 1.14586 0.86428 0.77802 0.84701 0.78427 1.19641 1.20969 1.21118 1.18370 0.85353 0.99481 0.95204 1.91563 1.41977 1.80277 1.95813 1.22397 0.90832 0.93585 0.98391 1.67223 1.09398 1.23360 1.24474 0.91678 0.90598 0.91749 0.89261 0.91958 0.91226 0.92045 0.83640 0.89345 0.93820 0.93849 0.90411 0.96746 0.94970 0.98859 0.92947 0.81497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.56 37.16 0.36 -0.80 16 2 C 0.08 0.80 3.11 -26.73 -0.08 0.72 16 3 C -0.17 -1.45 9.53 37.16 0.35 -1.09 16 4 O -0.30 -3.81 9.76 -18.88 -0.18 -3.99 16 5 C 0.31 4.25 7.45 -17.15 -0.13 4.12 16 6 C -0.16 -2.26 9.19 -39.29 -0.36 -2.62 16 7 C -0.02 -0.33 4.45 -104.29 -0.46 -0.80 16 8 C 0.09 1.58 4.87 -4.97 -0.02 1.56 16 9 N -0.53 -11.50 4.74 -245.82 -1.17 -12.67 16 10 C 0.04 0.70 9.17 60.07 0.55 1.25 16 11 C 0.19 5.01 4.72 -4.98 -0.02 4.99 16 12 C -0.51 -14.22 8.46 -34.44 -0.29 -14.51 16 13 H 0.06 1.80 7.12 -52.48 -0.37 1.43 16 14 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 15 N -0.90 -26.63 13.29 55.43 0.74 -25.89 16 16 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 17 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 C 0.04 0.60 7.29 -39.30 -0.29 0.31 16 21 F -0.12 -2.04 16.88 2.25 0.04 -2.01 16 22 C 0.10 1.37 11.16 -17.48 -0.20 1.18 16 23 N -0.52 -7.02 8.64 -13.28 -0.11 -7.14 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.08 0.43 8.14 -51.92 -0.42 0.01 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.09 0.95 6.98 -51.93 -0.36 0.59 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.15 1.86 8.05 -52.49 -0.42 1.44 16 32 H 0.09 1.60 7.92 -51.93 -0.41 1.19 16 33 H 0.04 0.73 7.99 -51.93 -0.41 0.32 16 34 H 0.04 0.76 6.90 -51.93 -0.36 0.41 16 35 H 0.08 1.64 6.76 -51.93 -0.35 1.29 16 36 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 37 H 0.03 0.89 7.93 -51.93 -0.41 0.48 16 38 H -0.01 -0.17 8.12 -51.93 -0.42 -0.60 16 39 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 40 H 0.17 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 339.71 15.07 5.12 5.12 Total: -1.00 -30.54 339.71 -7.33 -37.87 By element: Atomic # 1 Polarization: 2.30 SS G_CDS: -6.04 Total: -3.75 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: -0.69 Total: -4.24 kcal Atomic # 7 Polarization: -45.15 SS G_CDS: -0.54 Total: -45.70 kcal Atomic # 8 Polarization: -3.81 SS G_CDS: -0.18 Total: -3.99 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.04 Total: -2.01 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.54 -7.33 -37.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238793566.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.790 kcal (2) G-P(sol) polarization free energy of solvation -30.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds