Wall clock time and date at job start Tue Mar 31 2020 05:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47274 * 2 1 4 4 C 1.52992 * 109.47277 * 239.99679 * 2 1 3 5 5 C 1.50705 * 109.46914 * 119.99603 * 2 1 3 6 6 C 1.38405 * 119.84461 * 60.00392 * 5 2 1 7 7 C 1.37913 * 120.15153 * 179.97438 * 6 5 2 8 8 C 1.39694 * 119.84653 * 0.02562 * 7 6 5 9 9 C 1.47798 * 120.15250 * 179.97438 * 8 7 6 10 10 N 1.32857 * 120.24599 * 314.19200 * 9 8 7 11 11 C 1.32005 * 120.07441 * 179.97438 * 10 9 8 12 12 C 1.39201 * 120.59051 * 0.02562 * 11 10 9 13 13 N 1.31611 * 120.50213 * 359.67625 * 12 11 10 14 14 C 1.33973 * 119.89580 * 0.59992 * 13 12 11 15 15 C 1.40802 * 120.28540 * 179.69871 * 14 13 12 16 16 H 1.07999 * 120.00075 * 163.31596 * 15 14 13 17 17 C 1.40173 * 119.99806 * 343.32268 * 15 14 13 18 18 N 1.30683 * 119.99386 * 203.53237 * 17 15 14 19 19 Si 1.86798 * 120.00080 * 23.25026 * 17 15 14 20 20 H 1.48493 * 109.47249 * 275.48592 * 19 17 15 21 21 H 1.48498 * 109.47134 * 35.49261 * 19 17 15 22 22 H 1.48498 * 109.46792 * 155.48789 * 19 17 15 23 23 C 1.39698 * 119.69401 * 0.24942 * 8 7 6 24 24 C 1.37918 * 119.83879 * 359.49208 * 23 8 7 25 25 H 1.09000 * 109.47346 * 300.00049 * 1 2 3 26 26 H 1.09000 * 109.47297 * 60.00047 * 1 2 3 27 27 H 1.08999 * 109.47402 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47131 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.46642 * 299.99718 * 3 2 1 30 30 H 1.09000 * 109.46974 * 59.99723 * 3 2 1 31 31 H 1.08994 * 109.47348 * 300.00121 * 4 2 1 32 32 H 1.09002 * 109.47252 * 59.99906 * 4 2 1 33 33 H 1.09004 * 109.47334 * 180.02562 * 4 2 1 34 34 H 1.07996 * 119.92176 * 359.95534 * 6 5 2 35 35 H 1.08003 * 120.07464 * 180.02562 * 7 6 5 36 36 H 1.08001 * 119.70448 * 180.02562 * 11 10 9 37 37 H 1.08003 * 119.75007 * 179.97438 * 12 11 10 38 38 H 0.97002 * 119.99797 * 179.71855 * 18 17 15 39 39 H 1.07991 * 120.07440 * 179.72841 * 23 8 7 40 40 H 1.08003 * 119.91919 * 180.25494 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 2.0322 -0.7104 1.2306 6 6 1.6959 -2.0355 1.4464 7 6 2.1526 -2.6918 2.5701 8 6 2.9558 -2.0159 3.4918 9 6 3.4484 -2.7126 4.6986 10 7 2.6224 -3.4572 5.4255 11 6 3.0661 -4.0784 6.5025 12 6 4.3982 -3.9617 6.8892 13 7 5.2377 -3.2349 6.1828 14 6 4.8073 -2.5914 5.0894 15 6 5.6969 -1.8064 4.3312 16 1 5.4353 -1.5129 3.3253 17 6 6.9222 -1.4060 4.8819 18 7 7.5321 -0.3474 4.4181 19 14 7.6792 -2.3811 6.2838 20 1 7.1011 -1.9245 7.5731 21 1 7.3897 -3.8253 6.0952 22 1 9.1489 -2.1686 6.2975 23 6 3.2865 -0.6769 3.2704 24 6 2.8273 -0.0345 2.1397 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 3.1299 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6767 -1.7489 -1.2491 32 1 1.6766 -0.2075 -2.1392 33 1 3.1300 -0.7217 -1.2489 34 1 1.0743 -2.5565 0.7334 35 1 1.8897 -3.7260 2.7371 36 1 2.3895 -4.6825 7.0887 37 1 4.7466 -4.4755 7.7730 38 1 8.3780 -0.0679 4.8018 39 1 3.9034 -0.1472 3.9811 40 1 3.0856 0.9996 1.9652 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239606032.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:26 Heat of formation + Delta-G solvation = 35.726153 kcal Electronic energy + Delta-G solvation = -21589.549305 eV Core-core repulsion = 18560.740217 eV Total energy + Delta-G solvation = -3028.809088 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.69770 -38.90089 -35.98600 -34.25456 -32.70899 -31.45743 -30.49194 -28.55161 -27.20278 -27.14007 -26.23027 -23.74927 -22.24709 -21.35517 -21.09228 -18.84661 -17.91747 -16.64224 -16.28966 -15.39920 -15.01858 -14.54791 -14.15829 -14.10583 -13.92193 -13.50376 -13.17823 -13.03384 -12.82705 -12.62114 -12.45336 -11.88907 -11.79728 -11.72019 -11.58933 -11.56394 -11.27953 -11.02505 -10.98646 -10.84398 -10.57046 -10.20234 -10.08865 -9.78040 -9.46233 -9.25059 -8.46626 -8.20889 -7.74268 -7.43126 -7.16061 -4.89271 1.69484 2.13180 2.36062 2.66796 3.29081 3.32491 3.51280 4.22388 4.32101 4.45646 4.83839 4.94917 5.15789 5.25832 5.31565 5.50615 5.59605 5.63010 5.67296 5.68811 5.70116 5.86385 5.93220 5.96257 5.99216 6.09598 6.12129 6.16427 6.22237 6.25643 6.43105 6.45721 6.48266 6.58215 6.73499 6.77356 6.92793 7.11025 7.22485 7.41242 7.48575 7.68576 7.88440 8.19107 8.25403 8.85944 9.31607 9.66940 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.020339 B = 0.005342 C = 0.004446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.324484 B = 5240.569098 C = 6295.802920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.026 4.026 3 C -0.143 4.143 4 C -0.137 4.137 5 C -0.089 4.089 6 C -0.124 4.124 7 C -0.104 4.104 8 C 0.014 3.986 9 C -0.002 4.002 10 N -0.404 5.404 11 C -0.121 4.121 12 C 0.111 3.889 13 N -0.543 5.543 14 C 0.204 3.796 15 C -0.382 4.382 16 H 0.110 0.890 17 C 0.081 3.919 18 N -0.767 5.767 19 Si 0.990 3.010 20 H -0.277 1.277 21 H -0.254 1.254 22 H -0.324 1.324 23 C -0.088 4.088 24 C -0.125 4.125 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.111 0.889 35 H 0.114 0.886 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.295 0.705 39 H 0.131 0.869 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.078 1.612 -6.385 9.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.026 4.026 3 C -0.200 4.200 4 C -0.194 4.194 5 C -0.089 4.089 6 C -0.142 4.142 7 C -0.124 4.124 8 C 0.012 3.988 9 C -0.151 4.151 10 N -0.115 5.115 11 C -0.280 4.280 12 C -0.056 4.056 13 N -0.264 5.264 14 C 0.081 3.919 15 C -0.412 4.412 16 H 0.128 0.872 17 C -0.146 4.146 18 N -0.387 5.387 19 Si 0.823 3.177 20 H -0.203 1.203 21 H -0.179 1.179 22 H -0.257 1.257 23 C -0.108 4.108 24 C -0.143 4.143 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.129 0.871 35 H 0.133 0.867 36 H 0.152 0.848 37 H 0.153 0.847 38 H 0.106 0.894 39 H 0.149 0.851 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.919 1.809 -6.449 9.630 hybrid contribution 0.438 -0.462 0.745 0.980 sum -6.481 1.347 -5.705 8.738 Atomic orbital electron populations 1.21873 0.94288 1.01821 1.01352 1.19418 0.95199 0.94886 0.93079 1.21950 1.01461 0.95174 1.01399 1.21877 1.01415 1.00062 0.96058 1.19660 0.99202 0.94133 0.95920 1.20679 1.01480 0.94298 0.97728 1.21149 0.97902 0.99551 0.93749 1.18276 0.95472 0.92591 0.92427 1.20052 0.91122 1.04954 0.99019 1.67744 1.37180 1.02939 1.03675 1.22455 0.95431 1.10079 1.00007 1.23187 0.91605 0.94085 0.96748 1.67708 1.34612 1.13882 1.10239 1.19210 0.91689 0.90882 0.90095 1.19655 0.98542 1.21441 1.01600 0.87175 1.26522 0.95837 0.93415 0.98803 1.69607 1.14391 1.17684 1.37045 0.84724 0.71952 0.82122 0.78908 1.20296 1.17918 1.25661 1.21416 0.98166 0.93803 0.97367 1.20983 0.98850 0.99849 0.94620 0.92599 0.92917 0.92578 0.92100 0.92961 0.92311 0.92593 0.92924 0.92426 0.87132 0.86745 0.84782 0.84675 0.89441 0.85102 0.86234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 8.29 37.15 0.31 -1.22 16 2 C -0.03 -0.33 0.85 -155.66 -0.13 -0.46 16 3 C -0.14 -1.65 7.13 37.16 0.26 -1.39 16 4 C -0.14 -1.59 8.28 37.15 0.31 -1.28 16 5 C -0.09 -1.41 4.77 -104.50 -0.50 -1.91 16 6 C -0.12 -2.05 8.69 -39.64 -0.34 -2.40 16 7 C -0.10 -2.03 9.70 -39.16 -0.38 -2.41 16 8 C 0.01 0.30 5.19 -104.90 -0.54 -0.24 16 9 C 0.00 -0.06 6.39 -82.11 -0.53 -0.58 16 10 N -0.40 -9.50 10.33 -8.97 -0.09 -9.60 16 11 C -0.12 -2.59 11.22 -17.12 -0.19 -2.78 16 12 C 0.11 2.40 11.22 -17.29 -0.19 2.21 16 13 N -0.54 -13.50 5.06 -10.72 -0.05 -13.56 16 14 C 0.20 5.21 6.42 -84.56 -0.54 4.67 16 15 C -0.38 -9.83 7.78 -37.89 -0.29 -10.13 16 16 H 0.11 2.88 6.03 -52.49 -0.32 2.56 16 17 C 0.08 2.04 5.50 -17.31 -0.10 1.94 16 18 N -0.77 -18.92 13.92 55.56 0.77 -18.14 16 19 Si 0.99 22.81 25.61 -169.99 -4.35 18.46 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.25 -6.06 6.55 56.52 0.37 -5.69 16 22 H -0.32 -7.18 7.11 56.52 0.40 -6.78 16 23 C -0.09 -1.83 7.66 -39.15 -0.30 -2.13 16 24 C -0.13 -2.20 8.96 -39.64 -0.36 -2.55 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.62 7.37 -51.93 -0.38 0.24 16 28 H 0.06 0.74 7.51 -51.93 -0.39 0.35 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.68 7.50 -51.93 -0.39 0.29 16 31 H 0.05 0.64 7.38 -51.93 -0.38 0.25 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.11 1.56 7.08 -52.49 -0.37 1.19 16 35 H 0.11 2.19 8.06 -52.48 -0.42 1.76 16 36 H 0.13 2.41 8.06 -52.49 -0.42 1.99 16 37 H 0.14 2.40 8.06 -52.48 -0.42 1.98 16 38 H 0.29 6.59 8.29 -40.82 -0.34 6.26 16 39 H 0.13 2.89 6.96 -52.49 -0.37 2.53 16 40 H 0.12 1.87 5.87 -52.48 -0.31 1.56 16 LS Contribution 322.61 15.07 4.86 4.86 Total: -1.00 -27.65 322.61 -7.84 -35.49 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -5.45 Total: 3.15 kcal Atomic # 6 Polarization: -17.14 SS G_CDS: -3.52 Total: -20.66 kcal Atomic # 7 Polarization: -41.92 SS G_CDS: 0.63 Total: -41.30 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -4.35 Total: 18.46 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -27.65 -7.84 -35.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239606032.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.213 kcal (2) G-P(sol) polarization free energy of solvation -27.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds