Wall clock time and date at job start Tue Mar 31 2020 05:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.46759 * 2 1 4 4 C 1.52994 * 109.47383 * 239.99809 * 2 1 3 5 5 C 1.50704 * 109.47121 * 119.99473 * 2 1 3 6 6 C 1.38327 * 119.87320 * 60.00453 * 5 2 1 7 7 C 1.37996 * 120.12837 * 179.97438 * 6 5 2 8 8 C 1.39388 * 119.87361 * 359.97438 * 7 6 5 9 9 C 1.48304 * 120.13105 * 179.97438 * 8 7 6 10 10 C 1.40035 * 119.97995 * 4.98214 * 9 8 7 11 11 N 1.32184 * 120.29106 * 180.02562 * 10 9 8 12 12 C 1.31886 * 120.28341 * 359.72096 * 11 10 9 13 13 C 1.40826 * 119.96587 * 0.53159 * 12 11 10 14 14 C 1.41327 * 120.14584 * 179.74781 * 13 12 11 15 15 H 1.07999 * 120.00108 * 16.82912 * 14 13 12 16 16 C 1.40046 * 119.99827 * 196.82890 * 14 13 12 17 17 N 1.30738 * 119.99859 * 189.47454 * 16 14 13 18 18 Si 1.86803 * 120.00370 * 9.47432 * 16 14 13 19 19 H 1.48493 * 109.47407 * 270.00281 * 18 16 14 20 20 H 1.48505 * 109.46670 * 30.00223 * 18 16 14 21 21 H 1.48499 * 109.47153 * 149.99777 * 18 16 14 22 22 N 1.32514 * 119.98680 * 185.00278 * 9 8 7 23 23 C 1.39398 * 119.74714 * 0.27585 * 8 7 6 24 24 C 1.38004 * 119.86987 * 359.42517 * 23 8 7 25 25 H 1.09000 * 109.47329 * 300.00253 * 1 2 3 26 26 H 1.08998 * 109.47359 * 60.00735 * 1 2 3 27 27 H 1.09009 * 109.47015 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46701 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.46613 * 299.99184 * 3 2 1 30 30 H 1.09000 * 109.47406 * 59.99794 * 3 2 1 31 31 H 1.08997 * 109.46946 * 299.99699 * 4 2 1 32 32 H 1.09004 * 109.47493 * 60.00121 * 4 2 1 33 33 H 1.08999 * 109.47374 * 180.02562 * 4 2 1 34 34 H 1.08005 * 119.93795 * 0.02562 * 6 5 2 35 35 H 1.08003 * 120.06869 * 180.02562 * 7 6 5 36 36 H 1.08001 * 119.85499 * 359.97438 * 10 9 8 37 37 H 1.07997 * 120.01418 * 180.27964 * 12 11 10 38 38 H 0.96996 * 119.99689 * 354.93295 * 17 16 14 39 39 H 1.08003 * 120.06736 * 179.72331 * 23 8 7 40 40 H 1.08002 * 119.93450 * 180.29680 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 2.0323 -0.7103 1.2306 6 6 1.6966 -2.0347 1.4469 7 6 2.1541 -2.6904 2.5717 8 6 2.9565 -2.0157 3.4904 9 6 3.4508 -2.7147 4.7014 10 6 3.1996 -4.0817 4.8718 11 7 3.6370 -4.7107 5.9490 12 6 4.3184 -4.0574 6.8700 13 6 4.5730 -2.6813 6.7127 14 6 5.2982 -1.9763 7.6998 15 1 5.8862 -2.5167 8.4269 16 6 5.2545 -0.5770 7.7350 17 7 6.0635 0.0827 8.5222 18 14 4.0402 0.3471 6.6574 19 1 4.6704 0.6475 5.3468 20 1 2.8311 -0.4886 6.4453 21 1 3.6537 1.6168 7.3235 22 7 4.1297 -2.0453 5.6217 23 6 3.2872 -0.6797 3.2698 24 6 2.8290 -0.0359 2.1384 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9563 -0.8901 30 1 1.6765 1.9565 0.8899 31 1 1.6767 -1.7489 -1.2491 32 1 1.6767 -0.2075 -2.1392 33 1 3.1300 -0.7216 -1.2489 34 1 1.0759 -2.5568 0.7338 35 1 1.8918 -3.7245 2.7394 36 1 2.6454 -4.6244 4.1203 37 1 4.6776 -4.5766 7.7462 38 1 6.6422 -0.3972 9.1350 39 1 3.9049 -0.1507 3.9805 40 1 3.0887 0.9978 1.9640 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239606100.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:31 Heat of formation + Delta-G solvation = 32.328756 kcal Electronic energy + Delta-G solvation = -21416.362960 eV Core-core repulsion = 18387.406550 eV Total energy + Delta-G solvation = -3028.956410 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.94944 -39.10426 -36.31058 -34.25897 -32.81929 -31.51171 -30.84071 -28.66926 -27.45462 -27.34419 -25.93579 -23.95590 -22.69737 -21.48052 -20.88601 -19.13266 -18.55223 -16.89579 -16.09949 -15.71347 -15.16459 -14.73347 -14.39654 -14.32840 -13.97135 -13.64619 -13.49929 -13.22338 -13.01489 -12.71881 -12.63761 -12.12287 -12.01858 -11.95872 -11.77366 -11.53711 -11.26857 -11.05591 -11.01193 -10.97150 -10.55829 -10.31990 -10.09692 -9.78893 -9.41326 -9.23263 -8.72595 -8.62228 -7.87822 -7.61280 -7.30497 -4.97811 1.18360 1.73274 2.40116 2.64058 3.34312 3.46419 3.76633 4.07277 4.15183 4.52748 4.56845 4.70544 4.92594 4.94139 5.20452 5.26030 5.30773 5.38653 5.46567 5.50407 5.57418 5.66314 5.73270 5.76269 5.76792 5.83726 5.92334 5.96861 6.00237 6.09470 6.20138 6.21355 6.24987 6.41481 6.54776 6.68237 6.78778 6.87823 7.05282 7.21609 7.26101 7.30343 7.83449 7.99139 8.36652 8.77579 9.25503 9.80369 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.020862 B = 0.005202 C = 0.004334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.820191 B = 5381.018313 C = 6458.810299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.029 4.029 3 C -0.145 4.145 4 C -0.137 4.137 5 C -0.074 4.074 6 C -0.122 4.122 7 C -0.100 4.100 8 C -0.031 4.031 9 C 0.160 3.840 10 C -0.099 4.099 11 N -0.422 5.422 12 C -0.042 4.042 13 C 0.204 3.796 14 C -0.461 4.461 15 H 0.090 0.910 16 C 0.047 3.953 17 N -0.795 5.795 18 Si 1.129 2.871 19 H -0.276 1.276 20 H -0.274 1.274 21 H -0.319 1.319 22 N -0.527 5.527 23 C -0.096 4.096 24 C -0.128 4.128 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.119 0.881 35 H 0.126 0.874 36 H 0.137 0.863 37 H 0.140 0.860 38 H 0.288 0.712 39 H 0.139 0.861 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.026 2.068 -15.039 17.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.029 4.029 3 C -0.202 4.202 4 C -0.195 4.195 5 C -0.075 4.075 6 C -0.140 4.140 7 C -0.119 4.119 8 C -0.033 4.033 9 C 0.017 3.983 10 C -0.256 4.256 11 N -0.133 5.133 12 C -0.213 4.213 13 C 0.078 3.922 14 C -0.493 4.493 15 H 0.108 0.892 16 C -0.176 4.176 17 N -0.416 5.416 18 Si 0.961 3.039 19 H -0.203 1.203 20 H -0.201 1.201 21 H -0.250 1.250 22 N -0.249 5.249 23 C -0.115 4.115 24 C -0.145 4.145 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.137 0.863 35 H 0.144 0.856 36 H 0.154 0.846 37 H 0.158 0.842 38 H 0.099 0.901 39 H 0.157 0.843 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -8.391 3.525 -15.374 17.866 hybrid contribution 0.793 -1.728 0.725 2.035 sum -7.598 1.797 -14.649 16.600 Atomic orbital electron populations 1.21884 0.93877 1.02014 1.01699 1.19479 0.95551 0.95012 0.92830 1.21971 1.01367 0.95059 1.01792 1.21882 1.01333 1.00162 0.96075 1.19806 0.97857 0.94116 0.95705 1.20760 1.01281 0.94287 0.97657 1.21193 0.97123 0.99876 0.93697 1.18683 0.97691 0.93613 0.93289 1.20334 0.93745 0.91872 0.92360 1.22514 1.11227 0.92338 0.99514 1.67716 1.06026 1.38761 1.00826 1.23228 1.04724 0.93635 0.99699 1.19382 0.90621 0.91519 0.90629 1.20727 1.23708 0.94065 1.10814 0.89225 1.27664 0.97011 0.95780 0.97117 1.70583 1.14273 1.41348 1.15381 0.82562 0.75885 0.72014 0.73395 1.20333 1.20081 1.25025 1.67769 1.16934 1.36891 1.03316 1.21834 0.98423 0.94198 0.97041 1.21127 0.98845 1.00184 0.94382 0.92433 0.92610 0.92438 0.92164 0.92617 0.92132 0.92443 0.92615 0.92469 0.86308 0.85617 0.84582 0.84219 0.90093 0.84310 0.85726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 8.29 37.16 0.31 -0.96 16 2 C -0.03 -0.30 0.85 -155.66 -0.13 -0.43 16 3 C -0.14 -1.38 7.13 37.16 0.26 -1.11 16 4 C -0.14 -1.26 8.29 37.15 0.31 -0.95 16 5 C -0.07 -0.99 4.77 -104.55 -0.50 -1.49 16 6 C -0.12 -1.65 8.69 -39.64 -0.34 -1.99 16 7 C -0.10 -1.59 9.42 -39.24 -0.37 -1.96 16 8 C -0.03 -0.61 5.87 -104.90 -0.62 -1.23 16 9 C 0.16 3.67 6.73 -82.76 -0.56 3.11 16 10 C -0.10 -2.19 10.61 -16.73 -0.18 -2.36 16 11 N -0.42 -9.97 10.47 -12.05 -0.13 -10.10 16 12 C -0.04 -1.02 10.98 -16.55 -0.18 -1.20 16 13 C 0.20 5.27 6.15 -84.84 -0.52 4.74 16 14 C -0.46 -12.07 9.57 -37.73 -0.36 -12.43 16 15 H 0.09 2.30 8.06 -52.49 -0.42 1.88 16 16 C 0.05 1.24 5.52 -17.34 -0.10 1.14 16 17 N -0.79 -20.80 13.65 55.55 0.76 -20.04 16 18 Si 1.13 26.86 24.53 -169.99 -4.17 22.69 16 19 H -0.28 -6.25 5.54 56.52 0.31 -5.93 16 20 H -0.27 -6.72 6.39 56.52 0.36 -6.36 16 21 H -0.32 -7.42 7.11 56.52 0.40 -7.02 16 22 N -0.53 -13.30 4.53 -7.50 -0.03 -13.33 16 23 C -0.10 -1.82 9.50 -39.24 -0.37 -2.20 16 24 C -0.13 -1.95 8.96 -39.63 -0.36 -2.31 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.51 7.38 -51.92 -0.38 0.13 16 28 H 0.06 0.58 7.50 -51.93 -0.39 0.19 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.59 7.51 -51.93 -0.39 0.20 16 31 H 0.06 0.51 7.38 -51.93 -0.38 0.13 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.12 1.30 7.08 -52.48 -0.37 0.92 16 35 H 0.13 1.79 6.22 -52.48 -0.33 1.46 16 36 H 0.14 2.54 6.22 -52.49 -0.33 2.22 16 37 H 0.14 3.07 8.06 -52.49 -0.42 2.64 16 38 H 0.29 7.15 8.72 -40.82 -0.36 6.80 16 39 H 0.14 2.88 4.09 -52.48 -0.21 2.67 16 40 H 0.12 1.65 5.87 -52.49 -0.31 1.34 16 LS Contribution 318.34 15.07 4.80 4.80 Total: -1.00 -28.22 318.34 -7.81 -36.03 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -5.33 Total: 1.59 kcal Atomic # 6 Polarization: -17.93 SS G_CDS: -3.70 Total: -21.63 kcal Atomic # 7 Polarization: -44.07 SS G_CDS: 0.60 Total: -43.47 kcal Atomic # 14 Polarization: 26.86 SS G_CDS: -4.17 Total: 22.69 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.22 -7.81 -36.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239606100.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.361 kcal (2) G-P(sol) polarization free energy of solvation -28.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds