Wall clock time and date at job start Tue Mar 31 2020 06:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46906 * 111.00072 * 2 1 4 4 C 1.46902 * 111.00304 * 123.95967 * 2 1 3 5 5 C 1.50696 * 109.47179 * 163.73102 * 4 2 1 6 6 C 1.37939 * 120.07425 * 265.64172 * 5 4 2 7 7 C 1.38384 * 120.15313 * 180.02562 * 6 5 4 8 8 C 1.38419 * 120.30506 * 0.04497 * 7 6 5 9 9 C 1.37901 * 120.15091 * 359.67815 * 8 7 6 10 10 C 1.39649 * 120.08137 * 85.66842 * 5 4 2 11 11 C 1.47824 * 120.14794 * 359.97438 * 10 5 4 12 12 N 1.32581 * 119.99059 * 50.00323 * 11 10 5 13 13 C 1.31739 * 121.71701 * 179.97438 * 12 11 10 14 14 C 1.38869 * 121.50842 * 359.97438 * 13 12 11 15 15 C 1.36883 * 119.79891 * 0.02562 * 14 13 12 16 16 C 1.41122 * 118.39466 * 0.25684 * 15 14 13 17 17 C 1.40884 * 120.71681 * 179.74968 * 16 15 14 18 18 H 1.08003 * 120.00172 * 207.01695 * 17 16 15 19 19 C 1.40073 * 120.00134 * 27.01879 * 17 16 15 20 20 N 1.30762 * 120.00218 * 12.50589 * 19 17 16 21 21 Si 1.86798 * 119.99908 * 192.50437 * 19 17 16 22 22 H 1.48506 * 109.47010 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47428 * 119.99998 * 21 19 17 24 24 H 1.48497 * 109.47432 * 240.00022 * 21 19 17 25 25 H 1.08998 * 109.47080 * 296.04441 * 1 2 3 26 26 H 1.09005 * 109.46702 * 56.04247 * 1 2 3 27 27 H 1.08997 * 109.47250 * 176.04282 * 1 2 3 28 28 H 1.08996 * 109.47336 * 191.46113 * 3 2 1 29 29 H 1.08991 * 109.47404 * 311.46702 * 3 2 1 30 30 H 1.09000 * 109.46711 * 71.46724 * 3 2 1 31 31 H 1.08994 * 109.46764 * 43.72645 * 4 2 1 32 32 H 1.09000 * 109.46499 * 283.73013 * 4 2 1 33 33 H 1.07997 * 119.92746 * 0.02562 * 6 5 4 34 34 H 1.07997 * 119.84770 * 180.02562 * 7 6 5 35 35 H 1.07998 * 119.92469 * 179.97438 * 8 7 6 36 36 H 1.08001 * 120.08130 * 180.32159 * 9 8 7 37 37 H 1.07999 * 119.24514 * 179.97438 * 13 12 11 38 38 H 1.08004 * 120.09933 * 179.97438 * 14 13 12 39 39 H 1.07999 * 120.79973 * 179.97438 * 15 14 13 40 40 H 0.97005 * 120.00234 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7661 1.1375 5 6 3.4488 -1.0851 0.8987 6 6 3.8077 -2.2893 0.3296 7 6 5.1418 -2.5842 0.1100 8 6 6.1249 -1.6748 0.4601 9 6 5.7800 -0.4649 1.0246 10 6 4.4354 -0.1627 1.2535 11 6 4.0583 1.1298 1.8638 12 7 3.2284 1.1576 2.8973 13 6 2.8701 2.2898 3.4676 14 6 3.3453 3.5132 3.0138 15 6 4.2058 3.5566 1.9502 16 6 4.5807 2.3405 1.3402 17 6 5.4594 2.3286 0.2390 18 1 5.4138 1.5236 -0.4795 19 6 6.3921 3.3608 0.0760 20 7 6.6197 4.1970 1.0552 21 14 7.3108 3.5429 -1.5402 22 1 6.8757 2.4781 -2.4795 23 1 7.0170 4.8739 -2.1295 24 1 8.7705 3.4209 -1.2964 25 1 -0.3633 0.4512 0.9233 26 1 -0.3633 0.5741 -0.8525 27 1 -0.3633 -1.0252 -0.0709 28 1 3.0659 1.3498 -0.2042 29 1 1.4904 1.9546 -0.7700 30 1 1.8207 1.8277 0.9744 31 1 1.4324 -1.6934 1.2427 32 1 1.8980 -0.1763 2.0489 33 1 3.0458 -3.0037 0.0547 34 1 5.4172 -3.5283 -0.3362 35 1 7.1642 -1.9115 0.2864 36 1 6.5476 0.2460 1.2925 37 1 2.1912 2.2660 4.3072 38 1 3.0362 4.4278 3.4981 39 1 4.5849 4.4991 1.5837 40 1 7.2659 4.9117 0.9425 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239679810.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:54 Heat of formation + Delta-G solvation = 60.788302 kcal Electronic energy + Delta-G solvation = -22657.452303 eV Core-core repulsion = 19629.729992 eV Total energy + Delta-G solvation = -3027.722311 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.51434 -37.68184 -36.31493 -34.21774 -31.85509 -31.11373 -30.50687 -28.62087 -26.92493 -26.22057 -25.59845 -22.60662 -22.08119 -21.53177 -20.52983 -19.58607 -17.44605 -16.24476 -15.70903 -15.14805 -15.05896 -14.82935 -14.29414 -14.25298 -13.81850 -13.71609 -13.36672 -12.68282 -12.50537 -12.25390 -11.91115 -11.80632 -11.79290 -11.63378 -11.34338 -11.32042 -11.13926 -10.92876 -10.83917 -10.65711 -10.44739 -10.19704 -9.78216 -9.49137 -8.53810 -8.16046 -8.10859 -8.03023 -7.65186 -7.31761 -6.91057 -4.57348 1.88993 2.15166 2.58958 2.92689 2.98316 3.04895 3.11281 3.78978 4.36247 4.50527 4.83491 5.39870 5.45058 5.51781 5.58027 5.62003 5.75833 5.82825 5.86178 6.04736 6.10302 6.17278 6.21375 6.28451 6.36514 6.37930 6.56711 6.65080 6.72568 6.78848 6.85350 6.91280 7.01358 7.03466 7.18810 7.29817 7.44378 7.57080 7.63676 7.64845 7.72243 7.84788 7.87528 8.34641 8.55878 8.62338 9.50249 9.94678 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.013500 B = 0.008315 C = 0.006599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.621128 B = 3366.666124 C = 4242.089351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.540 5.540 3 C 0.020 3.980 4 C 0.084 3.916 5 C -0.067 4.067 6 C -0.113 4.113 7 C -0.141 4.141 8 C -0.131 4.131 9 C -0.094 4.094 10 C 0.028 3.972 11 C 0.023 3.977 12 N -0.453 5.453 13 C -0.037 4.037 14 C -0.150 4.150 15 C -0.131 4.131 16 C 0.088 3.912 17 C -0.436 4.436 18 H 0.089 0.911 19 C 0.074 3.926 20 N -0.787 5.787 21 Si 0.908 3.092 22 H -0.256 1.256 23 H -0.271 1.271 24 H -0.272 1.272 25 H 0.020 0.980 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.090 0.910 29 H 0.048 0.952 30 H 0.033 0.967 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.112 0.888 36 H 0.127 0.873 37 H 0.118 0.882 38 H 0.096 0.904 39 H 0.127 0.873 40 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.568 -4.767 -2.254 6.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.264 5.264 3 C -0.127 4.127 4 C -0.043 4.043 5 C -0.069 4.069 6 C -0.132 4.132 7 C -0.159 4.159 8 C -0.149 4.149 9 C -0.113 4.113 10 C 0.026 3.974 11 C -0.115 4.115 12 N -0.161 5.161 13 C -0.197 4.197 14 C -0.170 4.170 15 C -0.157 4.157 16 C 0.083 3.917 17 C -0.465 4.465 18 H 0.107 0.893 19 C -0.145 4.145 20 N -0.412 5.412 21 Si 0.732 3.268 22 H -0.179 1.179 23 H -0.196 1.196 24 H -0.197 1.197 25 H 0.038 0.962 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.109 0.891 29 H 0.066 0.934 30 H 0.052 0.948 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.128 0.872 34 H 0.127 0.873 35 H 0.130 0.870 36 H 0.145 0.855 37 H 0.135 0.865 38 H 0.114 0.886 39 H 0.145 0.855 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.607 -5.537 -2.287 6.993 hybrid contribution 0.578 1.568 -0.221 1.686 sum -3.029 -3.969 -2.508 5.587 Atomic orbital electron populations 1.22333 0.88698 1.01178 0.99932 1.62051 1.06347 1.14791 1.43234 1.22732 1.02665 0.87532 0.99819 1.21239 0.91526 0.97835 0.93713 1.19755 0.94541 0.93870 0.98697 1.20744 0.95653 0.96713 1.00063 1.20948 0.93117 0.99269 1.02556 1.20940 0.98620 0.94503 1.00858 1.21327 0.96025 0.95889 0.98084 1.18347 0.92059 0.91644 0.95329 1.19411 1.03826 0.91082 0.97221 1.66967 1.10725 1.30147 1.08242 1.21608 1.06481 0.88270 1.03298 1.21405 0.99394 0.97604 0.98640 1.21433 0.97796 0.99014 0.97410 1.18277 0.90744 0.90552 0.92104 1.19642 1.13107 1.06523 1.07247 0.89345 1.25995 0.96674 0.94128 0.97701 1.69749 1.27599 1.12872 1.30956 0.86228 0.79218 0.79582 0.81807 1.17884 1.19576 1.19708 0.96174 0.92007 0.92113 0.89112 0.93357 0.94848 0.91891 0.90163 0.87157 0.87285 0.87016 0.85482 0.86468 0.88557 0.85498 0.90502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 9.52 60.06 0.57 0.98 16 2 N -0.54 -9.95 4.96 -252.73 -1.25 -11.20 16 3 C 0.02 0.41 7.72 60.07 0.46 0.87 16 4 C 0.08 1.58 4.95 -4.98 -0.02 1.55 16 5 C -0.07 -1.34 5.18 -104.21 -0.54 -1.88 16 6 C -0.11 -1.98 9.67 -39.64 -0.38 -2.37 16 7 C -0.14 -2.32 10.04 -39.46 -0.40 -2.72 16 8 C -0.13 -2.31 10.03 -39.64 -0.40 -2.71 16 9 C -0.09 -1.95 8.01 -39.16 -0.31 -2.26 16 10 C 0.03 0.60 4.34 -104.90 -0.45 0.15 16 11 C 0.02 0.54 3.30 -82.23 -0.27 0.27 16 12 N -0.45 -10.47 7.30 -9.17 -0.07 -10.53 16 13 C -0.04 -0.80 10.70 -17.36 -0.19 -0.99 16 14 C -0.15 -3.30 10.03 -39.84 -0.40 -3.70 16 15 C -0.13 -3.14 8.73 -38.98 -0.34 -3.48 16 16 C 0.09 2.13 4.18 -106.41 -0.44 1.69 16 17 C -0.44 -10.48 6.54 -37.89 -0.25 -10.73 16 18 H 0.09 2.14 6.65 -52.48 -0.35 1.79 16 19 C 0.07 1.71 5.25 -17.32 -0.09 1.62 16 20 N -0.79 -18.69 10.86 55.55 0.60 -18.09 16 21 Si 0.91 17.62 29.58 -169.99 -5.03 12.59 16 22 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 23 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 24 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 25 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.06 0.85 8.04 -51.93 -0.42 0.43 16 27 H 0.06 0.80 8.08 -51.93 -0.42 0.38 16 28 H 0.09 2.06 4.46 -51.93 -0.23 1.83 16 29 H 0.05 0.89 7.99 -51.93 -0.41 0.48 16 30 H 0.03 0.72 6.20 -51.93 -0.32 0.40 16 31 H 0.06 1.05 7.86 -51.93 -0.41 0.64 16 32 H 0.08 1.67 5.23 -51.93 -0.27 1.40 16 33 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 34 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 35 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 36 H 0.13 2.75 7.30 -52.49 -0.38 2.36 16 37 H 0.12 2.27 8.06 -52.49 -0.42 1.85 16 38 H 0.10 1.86 8.06 -52.48 -0.42 1.44 16 39 H 0.13 3.13 6.26 -52.49 -0.33 2.80 16 40 H 0.28 6.14 8.29 -40.82 -0.34 5.81 16 LS Contribution 317.00 15.07 4.78 4.78 Total: -1.00 -25.68 317.00 -9.64 -35.32 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -5.22 Total: 10.83 kcal Atomic # 6 Polarization: -20.25 SS G_CDS: -3.45 Total: -23.70 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: -0.72 Total: -39.82 kcal Atomic # 14 Polarization: 17.62 SS G_CDS: -5.03 Total: 12.59 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -25.68 -9.64 -35.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239679810.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.113 kcal (2) G-P(sol) polarization free energy of solvation -25.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds