Wall clock time and date at job start Tue Mar 31 2020 06:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46901 * 110.99447 * 2 1 4 4 C 1.46894 * 110.99850 * 123.94930 * 2 1 3 5 5 C 1.50693 * 109.47125 * 66.05062 * 4 2 1 6 6 C 1.37957 * 120.07512 * 259.97169 * 5 4 2 7 7 C 1.38368 * 120.14619 * 180.02562 * 6 5 4 8 8 C 1.38412 * 120.29522 * 0.02751 * 7 6 5 9 9 C 1.37916 * 120.14458 * 359.67690 * 8 7 6 10 10 C 1.39589 * 120.07598 * 80.00015 * 5 4 2 11 11 C 1.47968 * 120.14305 * 359.97438 * 10 5 4 12 12 C 1.39890 * 119.44972 * 180.02562 * 11 10 5 13 13 C 1.36613 * 119.46428 * 179.97438 * 12 11 10 14 14 C 1.41293 * 118.41618 * 0.25661 * 13 12 11 15 15 C 1.41058 * 120.55649 * 179.72262 * 14 13 12 16 16 H 1.08000 * 119.99855 * 203.69364 * 15 14 13 17 17 C 1.40028 * 119.99545 * 23.69839 * 15 14 13 18 18 N 1.30781 * 120.00522 * 17.61601 * 17 15 14 19 19 Si 1.86806 * 119.99447 * 197.61915 * 17 15 14 20 20 H 1.48498 * 109.47071 * 59.99874 * 19 17 15 21 21 H 1.48501 * 109.46844 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47086 * 299.99749 * 19 17 15 23 23 C 1.40954 * 118.89062 * 359.52092 * 14 13 12 24 24 N 1.31261 * 120.39882 * 0.49078 * 23 14 13 25 25 H 1.09000 * 109.47584 * 296.04735 * 1 2 3 26 26 H 1.09002 * 109.47133 * 56.05119 * 1 2 3 27 27 H 1.09008 * 109.46739 * 176.04741 * 1 2 3 28 28 H 1.08999 * 109.46933 * 183.95224 * 3 2 1 29 29 H 1.09007 * 109.47381 * 303.94696 * 3 2 1 30 30 H 1.08996 * 109.47681 * 63.94918 * 3 2 1 31 31 H 1.09001 * 109.47100 * 306.04697 * 4 2 1 32 32 H 1.09000 * 109.46972 * 186.05037 * 4 2 1 33 33 H 1.08002 * 119.92460 * 0.02562 * 6 5 4 34 34 H 1.08000 * 119.85194 * 180.02562 * 7 6 5 35 35 H 1.07992 * 119.92907 * 179.97438 * 8 7 6 36 36 H 1.08000 * 120.07893 * 180.32048 * 9 8 7 37 37 H 1.08003 * 120.27166 * 359.97438 * 12 11 10 38 38 H 1.08004 * 120.78954 * 179.97438 * 13 12 11 39 39 H 0.96996 * 120.00507 * 180.02562 * 18 17 15 40 40 H 1.08001 * 119.79654 * 180.22411 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 1.6370 -2.2203 0.9729 6 6 0.5660 -2.7507 1.6621 7 6 0.2359 -4.0860 1.5124 8 6 0.9770 -4.8985 0.6718 9 6 2.0463 -4.3794 -0.0276 10 6 2.3882 -3.0340 0.1232 11 6 3.5382 -2.4719 -0.6190 12 6 4.2808 -3.3004 -1.4670 13 6 5.3423 -2.7816 -2.1528 14 6 5.6560 -1.4157 -1.9733 15 6 6.7461 -0.8347 -2.6546 16 1 7.2200 0.0513 -2.2587 17 6 7.2134 -1.4068 -3.8442 18 7 6.4599 -2.2458 -4.5065 19 14 8.9132 -0.9714 -4.4850 20 1 9.9349 -1.3536 -3.4775 21 1 9.1679 -1.7053 -5.7506 22 1 8.9882 0.4903 -4.7361 23 6 4.8590 -0.6422 -1.1054 24 7 3.8488 -1.1873 -0.4687 25 1 -0.3634 0.4512 0.9233 26 1 -0.3633 0.5739 -0.8525 27 1 -0.3633 -1.0253 -0.0708 28 1 3.0826 1.3434 -0.0708 29 1 1.5897 1.9164 -0.8525 30 1 1.7042 1.8725 0.9232 31 1 1.5610 -0.3870 2.0628 32 1 3.0797 -0.6609 1.1757 33 1 -0.0161 -2.1222 2.3198 34 1 -0.6037 -4.4962 2.0538 35 1 0.7144 -5.9400 0.5597 36 1 2.6207 -5.0131 -0.6871 37 1 4.0170 -4.3417 -1.5787 38 1 5.9305 -3.4019 -2.8129 39 1 6.7838 -2.6423 -5.3304 40 1 5.0835 0.4042 -0.9602 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239680465.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:59 Heat of formation + Delta-G solvation = 66.561418 kcal Electronic energy + Delta-G solvation = -21776.467811 eV Core-core repulsion = 18748.995841 eV Total energy + Delta-G solvation = -3027.471970 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.37140 -37.75596 -36.38308 -34.26566 -31.64862 -31.32299 -30.42260 -28.96257 -27.05279 -26.30676 -25.36641 -22.54630 -22.36534 -21.34656 -20.49067 -19.79827 -17.50230 -16.37112 -15.54470 -15.30294 -15.12037 -14.88166 -14.29857 -14.09919 -14.03034 -13.54222 -13.28993 -12.82478 -12.65244 -12.26075 -11.93458 -11.88209 -11.78614 -11.75853 -11.42231 -11.41157 -11.19923 -11.10605 -10.78642 -10.69980 -10.44747 -10.33476 -9.81664 -9.49860 -8.62587 -8.32544 -8.23224 -7.79022 -7.59503 -7.23751 -6.91574 -4.51990 1.64034 1.92062 2.72932 2.94590 2.96614 3.00915 3.22456 3.74924 4.20631 4.60497 4.85214 5.33385 5.36981 5.44412 5.49424 5.62915 5.67971 5.72216 5.77568 5.92965 5.97071 6.04880 6.11504 6.18235 6.25753 6.42642 6.46306 6.48472 6.62987 6.71592 6.83542 6.87080 6.91826 7.00020 7.06025 7.25401 7.36088 7.48760 7.69057 7.73668 7.76965 7.87527 7.93563 8.35881 8.54634 8.66445 9.63081 9.90632 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.021668 B = 0.004960 C = 0.004227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.929405 B = 5644.196982 C = 6623.036097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.513 5.513 3 C 0.037 3.963 4 C 0.103 3.897 5 C -0.077 4.077 6 C -0.116 4.116 7 C -0.154 4.154 8 C -0.118 4.118 9 C -0.137 4.137 10 C 0.038 3.962 11 C -0.001 4.001 12 C -0.122 4.122 13 C -0.146 4.146 14 C 0.070 3.930 15 C -0.436 4.436 16 H 0.085 0.915 17 C 0.073 3.927 18 N -0.777 5.777 19 Si 0.914 3.086 20 H -0.261 1.261 21 H -0.276 1.276 22 H -0.262 1.262 23 C -0.020 4.020 24 N -0.416 5.416 25 H 0.012 0.988 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.056 0.944 30 H 0.009 0.991 31 H 0.009 0.991 32 H 0.122 0.878 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.112 0.888 36 H 0.119 0.881 37 H 0.098 0.902 38 H 0.124 0.876 39 H 0.286 0.714 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.933 -0.113 5.924 8.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.235 5.235 3 C -0.112 4.112 4 C -0.024 4.024 5 C -0.078 4.078 6 C -0.134 4.134 7 C -0.172 4.172 8 C -0.136 4.136 9 C -0.156 4.156 10 C 0.036 3.964 11 C -0.135 4.135 12 C -0.143 4.143 13 C -0.170 4.170 14 C 0.066 3.934 15 C -0.465 4.465 16 H 0.103 0.897 17 C -0.147 4.147 18 N -0.400 5.400 19 Si 0.737 3.263 20 H -0.186 1.186 21 H -0.201 1.201 22 H -0.187 1.187 23 C -0.186 4.186 24 N -0.122 5.122 25 H 0.030 0.970 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.095 0.905 29 H 0.075 0.925 30 H 0.027 0.973 31 H 0.027 0.973 32 H 0.140 0.860 33 H 0.126 0.874 34 H 0.127 0.873 35 H 0.130 0.870 36 H 0.137 0.863 37 H 0.116 0.884 38 H 0.142 0.858 39 H 0.098 0.902 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.279 0.020 5.796 8.545 hybrid contribution 0.816 -0.086 -0.432 0.928 sum -5.463 -0.066 5.364 7.656 Atomic orbital electron populations 1.22419 0.89337 1.01751 0.98966 1.61678 1.05459 1.12830 1.43570 1.22260 1.01851 0.88542 0.98501 1.21229 1.03630 0.88796 0.88710 1.19796 0.95157 0.95624 0.97237 1.20879 0.97141 0.95230 1.00184 1.20886 1.00852 0.94144 1.01336 1.20877 0.96137 0.99025 0.97601 1.21190 0.98300 0.95023 1.01113 1.18555 0.92813 0.91774 0.93212 1.18720 0.99530 0.90785 1.04417 1.21303 0.96977 0.98597 0.97390 1.21291 0.98748 0.95428 1.01577 1.18601 0.91684 0.92042 0.91118 1.19632 1.11706 1.10468 1.04698 0.89707 1.26062 0.98968 0.93455 0.96260 1.69778 1.35642 1.21708 1.12876 0.86261 0.81575 0.79916 0.78512 1.18554 1.20115 1.18659 1.22456 0.95051 0.98338 1.02714 1.67134 1.14245 1.10891 1.19973 0.96980 0.92403 0.91663 0.90505 0.92539 0.97266 0.97293 0.86019 0.87392 0.87282 0.87015 0.86295 0.88385 0.85799 0.90235 0.85752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.27 60.06 0.56 0.93 16 2 N -0.51 -9.19 4.13 -252.72 -1.04 -10.23 16 3 C 0.04 0.59 9.45 60.07 0.57 1.16 16 4 C 0.10 1.87 4.08 -4.98 -0.02 1.84 16 5 C -0.08 -1.42 4.61 -104.22 -0.48 -1.90 16 6 C -0.12 -1.85 8.72 -39.64 -0.35 -2.19 16 7 C -0.15 -2.29 10.04 -39.47 -0.40 -2.68 16 8 C -0.12 -1.83 10.03 -39.64 -0.40 -2.22 16 9 C -0.14 -2.46 9.42 -39.18 -0.37 -2.83 16 10 C 0.04 0.77 5.88 -104.88 -0.62 0.15 16 11 C 0.00 -0.02 6.71 -82.75 -0.56 -0.58 16 12 C -0.12 -2.83 9.38 -39.55 -0.37 -3.20 16 13 C -0.15 -3.62 8.74 -39.01 -0.34 -3.96 16 14 C 0.07 1.77 5.59 -106.64 -0.60 1.17 16 15 C -0.44 -10.69 9.07 -37.84 -0.34 -11.03 16 16 H 0.08 1.96 7.91 -52.49 -0.41 1.54 16 17 C 0.07 1.70 5.17 -17.33 -0.09 1.61 16 18 N -0.78 -18.81 10.92 55.55 0.61 -18.21 16 19 Si 0.91 17.29 29.60 -169.99 -5.03 12.26 16 20 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 21 H -0.28 -5.12 7.11 56.52 0.40 -4.72 16 22 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 23 C -0.02 -0.48 10.79 -16.77 -0.18 -0.66 16 24 N -0.42 -9.46 5.00 -9.10 -0.05 -9.51 16 25 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 26 H 0.06 0.84 8.12 -51.93 -0.42 0.42 16 27 H 0.06 1.05 6.65 -51.92 -0.35 0.71 16 28 H 0.08 1.31 7.56 -51.93 -0.39 0.92 16 29 H 0.06 0.85 8.12 -51.93 -0.42 0.43 16 30 H 0.01 0.13 8.14 -51.93 -0.42 -0.29 16 31 H 0.01 0.15 7.98 -51.93 -0.41 -0.26 16 32 H 0.12 2.43 5.58 -51.93 -0.29 2.15 16 33 H 0.11 1.50 8.03 -52.49 -0.42 1.08 16 34 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 35 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 36 H 0.12 2.02 6.15 -52.49 -0.32 1.70 16 37 H 0.10 2.02 6.15 -52.48 -0.32 1.70 16 38 H 0.12 3.14 6.19 -52.48 -0.32 2.81 16 39 H 0.29 6.30 8.30 -40.82 -0.34 5.96 16 40 H 0.12 2.70 7.99 -52.49 -0.42 2.28 16 LS Contribution 325.06 15.07 4.90 4.90 Total: -1.00 -26.23 325.06 -9.93 -36.16 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -5.34 Total: 9.03 kcal Atomic # 6 Polarization: -20.42 SS G_CDS: -3.98 Total: -24.40 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: -0.48 Total: -37.95 kcal Atomic # 14 Polarization: 17.29 SS G_CDS: -5.03 Total: 12.26 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -26.23 -9.93 -36.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239680465.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.719 kcal (2) G-P(sol) polarization free energy of solvation -26.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds