Wall clock time and date at job start Tue Mar 31 2020 06:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46901 * 110.99637 * 2 1 4 4 C 1.46891 * 111.00306 * 123.95508 * 2 1 3 5 5 C 1.50708 * 109.47219 * 163.79838 * 4 2 1 6 6 C 1.38023 * 120.06286 * 266.02715 * 5 4 2 7 7 C 1.38305 * 120.12323 * 180.02562 * 6 5 4 8 8 C 1.38361 * 120.25609 * 359.97376 * 7 6 5 9 9 C 1.37981 * 120.12157 * 359.74755 * 8 7 6 10 10 C 1.39369 * 120.06019 * 86.04693 * 5 4 2 11 11 C 1.48312 * 120.12790 * 359.95771 * 10 5 4 12 12 C 1.39897 * 119.60544 * 229.59657 * 11 10 5 13 13 C 1.38694 * 119.46318 * 180.23035 * 12 11 10 14 14 C 1.38299 * 118.68608 * 359.50254 * 13 12 11 15 15 C 1.40686 * 119.18676 * 0.49517 * 14 13 12 16 16 C 1.41378 * 119.76777 * 179.72825 * 15 14 13 17 17 H 1.08005 * 119.99495 * 8.20405 * 16 15 14 18 18 C 1.40014 * 120.00133 * 188.20949 * 16 15 14 19 19 N 1.30741 * 119.99777 * 7.94457 * 18 16 15 20 20 Si 1.86796 * 120.00005 * 187.95054 * 18 16 15 21 21 H 1.48494 * 109.47313 * 89.99729 * 20 18 16 22 22 H 1.48508 * 109.47114 * 209.99805 * 20 18 16 23 23 H 1.48501 * 109.46909 * 329.99582 * 20 18 16 24 24 N 1.32217 * 119.60643 * 49.56979 * 11 10 5 25 25 H 1.08996 * 109.47135 * 300.80939 * 1 2 3 26 26 H 1.09000 * 109.47656 * 60.81675 * 1 2 3 27 27 H 1.09009 * 109.46751 * 180.81385 * 1 2 3 28 28 H 1.09002 * 109.47352 * 190.97316 * 3 2 1 29 29 H 1.09007 * 109.47152 * 310.97430 * 3 2 1 30 30 H 1.09001 * 109.47211 * 70.97070 * 3 2 1 31 31 H 1.09007 * 109.47383 * 43.79878 * 4 2 1 32 32 H 1.08999 * 109.47272 * 283.79747 * 4 2 1 33 33 H 1.07993 * 119.93683 * 0.02562 * 6 5 4 34 34 H 1.08001 * 119.87341 * 179.97438 * 7 6 5 35 35 H 1.08001 * 119.94052 * 180.02562 * 8 7 6 36 36 H 1.07995 * 120.06369 * 180.27515 * 9 8 7 37 37 H 1.07994 * 120.27224 * 359.95231 * 12 11 10 38 38 H 1.07999 * 120.65580 * 179.74572 * 13 12 11 39 39 H 1.07996 * 120.40458 * 180.23731 * 14 13 12 40 40 H 0.97003 * 119.99654 * 174.99239 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1375 5 6 3.4494 -1.0836 0.8994 6 6 3.8092 -2.2847 0.3225 7 6 5.1430 -2.5777 0.1039 8 6 6.1239 -1.6697 0.4613 9 6 5.7755 -0.4634 1.0335 10 6 4.4330 -0.1652 1.2618 11 6 4.0526 1.1273 1.8817 12 6 4.5838 2.3189 1.3766 13 6 4.2298 3.5256 1.9616 14 6 3.3482 3.5135 3.0271 15 6 2.8480 2.2826 3.4897 16 6 1.9505 2.2554 4.5818 17 1 1.5479 3.1782 4.9729 18 6 1.5838 1.0324 5.1563 19 7 2.1855 -0.0688 4.7893 20 14 0.2348 0.9740 6.4471 21 1 -1.0777 0.7721 5.7826 22 1 0.4938 -0.1494 7.3833 23 1 0.2162 2.2529 7.2017 24 7 3.2151 1.1398 2.9047 25 1 -0.3633 0.5263 0.8826 26 1 -0.3634 0.5011 -0.8972 27 1 -0.3633 -1.0277 0.0146 28 1 3.0675 1.3492 -0.1956 29 1 1.4964 1.9522 -0.7759 30 1 1.8127 1.8308 0.9715 31 1 1.4332 -1.6939 1.2421 32 1 1.8969 -0.1767 2.0491 33 1 3.0478 -2.9970 0.0412 34 1 5.4201 -3.5190 -0.3474 35 1 7.1640 -1.9036 0.2879 36 1 6.5417 0.2465 1.3079 37 1 5.2675 2.2991 0.5409 38 1 4.6315 4.4566 1.5898 39 1 3.0507 4.4372 3.5009 40 1 1.9833 -0.9047 5.2380 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239680957.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:03 Heat of formation + Delta-G solvation = 68.755477 kcal Electronic energy + Delta-G solvation = -22584.527931 eV Core-core repulsion = 19557.151103 eV Total energy + Delta-G solvation = -3027.376829 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.48036 -37.68563 -36.27625 -33.77120 -31.84675 -31.10332 -30.41983 -28.81802 -26.93743 -26.32506 -25.40395 -22.84644 -22.13149 -21.38699 -20.49687 -19.65808 -17.51662 -16.24989 -15.36013 -15.08143 -14.81033 -14.73640 -14.60643 -14.14358 -13.86233 -13.80454 -13.39955 -12.70519 -12.53494 -12.28946 -11.97795 -11.92332 -11.65910 -11.38644 -11.30145 -11.16752 -10.95896 -10.84249 -10.80478 -10.65135 -10.43697 -10.29843 -9.93347 -9.40885 -8.56833 -8.25697 -8.16428 -7.83617 -7.49815 -7.24871 -6.53607 -4.58156 1.75493 1.97073 2.70950 2.95382 3.04107 3.06225 3.13994 3.88059 4.25990 4.63470 4.83633 5.31669 5.40472 5.42857 5.55258 5.67081 5.75019 5.89199 5.89679 5.99330 6.05147 6.14253 6.21383 6.22662 6.39137 6.43962 6.52257 6.55602 6.66386 6.73815 6.74975 6.90660 6.99699 7.03077 7.08002 7.25506 7.33052 7.49008 7.56282 7.64186 7.67799 7.69323 7.95525 8.14966 8.58597 8.83261 9.95010 10.21844 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.014611 B = 0.007135 C = 0.006642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.963113 B = 3923.315662 C = 4214.497455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.543 5.543 3 C 0.022 3.978 4 C 0.066 3.934 5 C -0.035 4.035 6 C -0.113 4.113 7 C -0.131 4.131 8 C -0.130 4.130 9 C -0.110 4.110 10 C -0.005 4.005 11 C 0.186 3.814 12 C -0.299 4.299 13 C -0.057 4.057 14 C -0.275 4.275 15 C 0.259 3.741 16 C -0.435 4.435 17 H 0.083 0.917 18 C 0.074 3.926 19 N -0.718 5.718 20 Si 0.903 3.097 21 H -0.269 1.269 22 H -0.276 1.276 23 H -0.262 1.262 24 N -0.469 5.469 25 H 0.025 0.975 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.076 0.924 29 H 0.047 0.953 30 H 0.040 0.960 31 H 0.061 0.939 32 H 0.114 0.886 33 H 0.115 0.885 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.118 0.882 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.667 -2.878 -5.932 6.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.266 5.266 3 C -0.126 4.126 4 C -0.061 4.061 5 C -0.036 4.036 6 C -0.131 4.131 7 C -0.149 4.149 8 C -0.149 4.149 9 C -0.129 4.129 10 C -0.007 4.007 11 C 0.041 3.959 12 C -0.322 4.322 13 C -0.081 4.081 14 C -0.298 4.298 15 C 0.134 3.866 16 C -0.466 4.466 17 H 0.101 0.899 18 C -0.151 4.151 19 N -0.339 5.339 20 Si 0.727 3.273 21 H -0.194 1.194 22 H -0.201 1.201 23 H -0.186 1.186 24 N -0.182 5.182 25 H 0.043 0.957 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.095 0.905 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.080 0.920 32 H 0.131 0.869 33 H 0.133 0.867 34 H 0.131 0.869 35 H 0.132 0.868 36 H 0.136 0.864 37 H 0.113 0.887 38 H 0.114 0.886 39 H 0.116 0.884 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.402 -4.092 -5.982 7.259 hybrid contribution -0.390 1.170 0.997 1.587 sum 0.011 -2.921 -4.985 5.777 Atomic orbital electron populations 1.22310 0.88485 1.01119 1.00201 1.62089 1.06698 1.14338 1.43515 1.22659 1.01295 0.88269 1.00408 1.21545 0.90583 0.98760 0.95210 1.19736 0.95092 0.92890 0.95917 1.20882 0.95771 0.96853 0.99641 1.20994 0.93101 0.99196 1.01653 1.20893 0.98726 0.94441 1.00811 1.21112 0.95269 0.96920 0.99559 1.18697 0.92415 0.93167 0.96398 1.19634 0.93701 0.90130 0.92408 1.21137 1.11179 0.93082 1.06806 1.20770 0.95997 0.96186 0.95116 1.21765 1.06435 0.98548 1.03028 1.18491 0.90380 0.86224 0.91503 1.19574 1.21820 0.93604 1.11586 0.89861 1.26001 0.96598 0.95278 0.97248 1.70020 1.32553 0.99330 1.31984 0.86399 0.81413 0.79058 0.80392 1.19388 1.20114 1.18633 1.68653 1.13689 1.28261 1.07592 0.95665 0.92143 0.92160 0.90528 0.93389 0.94129 0.92002 0.86866 0.86739 0.86932 0.86779 0.86414 0.88691 0.88574 0.88424 0.91378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 9.54 60.07 0.57 1.03 16 2 N -0.54 -10.36 4.96 -252.71 -1.25 -11.62 16 3 C 0.02 0.43 7.74 60.07 0.47 0.90 16 4 C 0.07 1.35 4.94 -4.98 -0.02 1.32 16 5 C -0.04 -0.71 5.16 -104.28 -0.54 -1.24 16 6 C -0.11 -1.95 9.67 -39.64 -0.38 -2.34 16 7 C -0.13 -2.03 10.04 -39.51 -0.40 -2.43 16 8 C -0.13 -2.07 10.03 -39.63 -0.40 -2.46 16 9 C -0.11 -2.02 9.47 -39.24 -0.37 -2.39 16 10 C -0.01 -0.11 4.86 -104.90 -0.51 -0.62 16 11 C 0.19 4.28 3.28 -82.94 -0.27 4.01 16 12 C -0.30 -6.46 7.94 -38.79 -0.31 -6.77 16 13 C -0.06 -1.22 10.15 -39.39 -0.40 -1.62 16 14 C -0.27 -6.48 9.83 -38.64 -0.38 -6.86 16 15 C 0.26 6.70 6.09 -85.01 -0.52 6.18 16 16 C -0.43 -11.12 9.13 -37.72 -0.34 -11.47 16 17 H 0.08 2.02 7.86 -52.48 -0.41 1.61 16 18 C 0.07 1.81 5.46 -17.35 -0.09 1.71 16 19 N -0.72 -18.17 11.59 55.55 0.64 -17.52 16 20 Si 0.90 18.13 29.57 -169.99 -5.03 13.11 16 21 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 22 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 23 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 24 N -0.47 -11.91 4.88 -7.68 -0.04 -11.95 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.88 8.13 -51.93 -0.42 0.46 16 27 H 0.06 0.89 7.98 -51.92 -0.41 0.48 16 28 H 0.08 1.59 4.93 -51.93 -0.26 1.34 16 29 H 0.05 0.85 8.06 -51.92 -0.42 0.44 16 30 H 0.04 0.93 6.29 -51.93 -0.33 0.60 16 31 H 0.06 1.18 7.80 -51.93 -0.41 0.78 16 32 H 0.11 2.72 5.18 -51.93 -0.27 2.45 16 33 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 34 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 35 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 36 H 0.12 2.05 8.02 -52.49 -0.42 1.62 16 37 H 0.09 1.88 8.02 -52.49 -0.42 1.46 16 38 H 0.10 1.78 8.06 -52.49 -0.42 1.35 16 39 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 40 H 0.27 6.42 8.30 -40.82 -0.34 6.08 16 LS Contribution 324.67 15.07 4.89 4.89 Total: -1.00 -27.09 324.67 -10.12 -37.21 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -5.44 Total: 8.93 kcal Atomic # 6 Polarization: -19.15 SS G_CDS: -3.90 Total: -23.05 kcal Atomic # 7 Polarization: -40.44 SS G_CDS: -0.65 Total: -41.09 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.03 Total: 13.11 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -27.09 -10.12 -37.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239680957.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.961 kcal (2) G-P(sol) polarization free energy of solvation -27.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds