Wall clock time and date at job start Tue Mar 31 2020 06:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46900 * 110.99889 * 2 1 4 4 C 1.46904 * 111.00103 * 123.95112 * 2 1 3 5 5 C 1.50696 * 109.47125 * 167.30034 * 4 2 1 6 6 C 1.38034 * 120.06326 * 107.45110 * 5 4 2 7 7 C 1.38305 * 120.11990 * 179.97438 * 6 5 4 8 8 C 1.38339 * 120.24840 * 359.97438 * 7 6 5 9 9 C 1.37994 * 120.12720 * 0.02562 * 8 7 6 10 10 C 1.39337 * 120.06235 * 287.17464 * 5 4 2 11 11 C 1.48367 * 120.11919 * 0.02562 * 10 5 4 12 12 C 1.38902 * 119.61119 * 174.07720 * 11 10 5 13 13 C 1.40849 * 118.76303 * 179.97438 * 12 11 10 14 14 C 1.41522 * 120.98813 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99791 * 329.93926 * 14 13 12 16 16 C 1.40044 * 119.99771 * 149.94082 * 14 13 12 17 17 N 1.30737 * 120.00453 * 346.33747 * 16 14 13 18 18 Si 1.86802 * 119.99658 * 166.34147 * 16 14 13 19 19 H 1.48499 * 109.47298 * 59.99734 * 18 16 14 20 20 H 1.48504 * 109.46848 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47284 * 299.99574 * 18 16 14 22 22 C 1.41140 * 118.02283 * 0.02562 * 13 12 11 23 23 C 1.37743 * 119.07414 * 359.97438 * 22 13 12 24 24 N 1.31911 * 121.15876 * 359.72339 * 23 22 13 25 25 H 1.08995 * 109.47219 * 56.05010 * 1 2 3 26 26 H 1.09000 * 109.46954 * 176.05507 * 1 2 3 27 27 H 1.09002 * 109.46923 * 296.04598 * 1 2 3 28 28 H 1.08993 * 109.47522 * 61.34313 * 3 2 1 29 29 H 1.09001 * 109.46916 * 181.34192 * 3 2 1 30 30 H 1.09001 * 109.46815 * 301.33883 * 3 2 1 31 31 H 1.09006 * 109.47311 * 287.30092 * 4 2 1 32 32 H 1.08999 * 109.46882 * 47.29823 * 4 2 1 33 33 H 1.08002 * 119.93896 * 359.97438 * 6 5 4 34 34 H 1.08007 * 119.87462 * 179.97438 * 7 6 5 35 35 H 1.08005 * 119.94017 * 179.97438 * 8 7 6 36 36 H 1.07995 * 120.06329 * 179.97438 * 9 8 7 37 37 H 1.07995 * 120.61446 * 0.02791 * 12 11 10 38 38 H 0.96999 * 120.00045 * 180.02562 * 17 16 14 39 39 H 1.08000 * 120.46211 * 179.97438 * 22 13 12 40 40 H 1.08004 * 119.42150 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 3.4695 -1.0095 0.9402 6 6 4.3920 -0.3266 1.7069 7 6 5.7451 -0.5496 1.5270 8 6 6.1817 -1.4577 0.5791 9 6 5.2683 -2.1461 -0.1930 10 6 3.9035 -1.9288 -0.0127 11 6 2.9165 -2.6700 -0.8359 12 6 3.3595 -3.4905 -1.8654 13 6 2.4071 -4.1862 -2.6353 14 6 2.8062 -5.0343 -3.6956 15 1 3.7108 -4.8216 -4.2459 16 6 2.0280 -6.1492 -4.0313 17 7 1.0934 -6.5635 -3.2163 18 14 2.3254 -7.0445 -5.6436 19 1 3.7189 -7.5568 -5.6756 20 1 1.3776 -8.1817 -5.7604 21 1 2.1165 -6.1071 -6.7762 22 6 1.0428 -4.0116 -2.3185 23 6 0.6987 -3.1763 -1.2787 24 7 1.6201 -2.5458 -0.5761 25 1 -0.3633 0.5739 -0.8524 26 1 -0.3633 -1.0252 -0.0707 27 1 -0.3633 0.4513 0.9233 28 1 1.6656 1.8873 0.9017 29 1 3.0848 1.3424 -0.0241 30 1 1.6266 1.9021 -0.8778 31 1 1.8404 -0.2027 2.0579 32 1 1.4751 -1.7213 1.2044 33 1 4.0566 0.3833 2.4486 34 1 6.4635 -0.0127 2.1288 35 1 7.2395 -1.6277 0.4425 36 1 5.6103 -2.8545 -0.9329 37 1 4.4147 -3.5937 -2.0711 38 1 0.5547 -7.3359 -3.4487 39 1 0.2794 -4.5257 -2.8835 40 1 -0.3435 -3.0389 -1.0312 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239681017.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:08 Heat of formation + Delta-G solvation = 68.579995 kcal Electronic energy + Delta-G solvation = -21822.679750 eV Core-core repulsion = 18795.295312 eV Total energy + Delta-G solvation = -3027.384438 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.47553 -37.72189 -36.48037 -34.06705 -31.77592 -31.35822 -30.52707 -28.18985 -27.14076 -26.36161 -25.68839 -23.05053 -22.19924 -21.21032 -20.61342 -19.86413 -17.46497 -16.01846 -15.47666 -15.34160 -15.01604 -14.94199 -14.37679 -14.16759 -14.04816 -13.57689 -13.32423 -12.76114 -12.71670 -12.45398 -12.25810 -11.96294 -11.87361 -11.53619 -11.39724 -11.25870 -11.19984 -11.05202 -10.86073 -10.63625 -10.47759 -10.22669 -9.76916 -9.37436 -8.77849 -8.40120 -7.94913 -7.73810 -7.64714 -7.07565 -6.78688 -4.55610 1.52859 1.80557 2.80467 2.98011 3.04007 3.06978 3.29364 3.89455 4.19033 4.68707 4.78063 5.20382 5.27119 5.29521 5.39840 5.56371 5.61667 5.68972 5.73011 5.84235 5.89845 5.95074 6.07337 6.10561 6.18564 6.34743 6.38505 6.40335 6.62700 6.74538 6.80101 6.88656 6.93367 6.96269 7.15381 7.21058 7.36202 7.44924 7.51391 7.63010 7.71305 7.89529 8.15385 8.48034 8.76183 8.79409 9.60976 10.15297 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.020160 B = 0.005146 C = 0.004333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.543193 B = 5440.197191 C = 6461.024463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.511 5.511 3 C 0.024 3.976 4 C 0.107 3.893 5 C -0.057 4.057 6 C -0.126 4.126 7 C -0.134 4.134 8 C -0.126 4.126 9 C -0.114 4.114 10 C 0.006 3.994 11 C 0.157 3.843 12 C -0.246 4.246 13 C 0.130 3.870 14 C -0.466 4.466 15 H 0.079 0.921 16 C 0.079 3.921 17 N -0.796 5.796 18 Si 0.910 3.090 19 H -0.265 1.265 20 H -0.278 1.278 21 H -0.263 1.263 22 C -0.199 4.199 23 C 0.083 3.917 24 N -0.523 5.523 25 H 0.055 0.945 26 H 0.078 0.922 27 H 0.009 0.991 28 H 0.012 0.988 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.012 0.988 32 H 0.120 0.880 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.116 0.884 36 H 0.126 0.874 37 H 0.102 0.898 38 H 0.282 0.718 39 H 0.118 0.882 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.356 8.597 5.803 10.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.233 5.233 3 C -0.125 4.125 4 C -0.020 4.020 5 C -0.058 4.058 6 C -0.145 4.145 7 C -0.152 4.152 8 C -0.145 4.145 9 C -0.132 4.132 10 C 0.005 3.995 11 C 0.023 3.977 12 C -0.269 4.269 13 C 0.122 3.878 14 C -0.497 4.497 15 H 0.097 0.903 16 C -0.139 4.139 17 N -0.422 5.422 18 Si 0.735 3.265 19 H -0.190 1.190 20 H -0.203 1.203 21 H -0.188 1.188 22 C -0.222 4.222 23 C -0.070 4.070 24 N -0.236 5.236 25 H 0.074 0.926 26 H 0.096 0.904 27 H 0.027 0.973 28 H 0.031 0.969 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.030 0.970 32 H 0.137 0.863 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.134 0.866 36 H 0.144 0.856 37 H 0.120 0.880 38 H 0.093 0.907 39 H 0.136 0.864 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.010 8.716 6.084 10.818 hybrid contribution 0.158 -0.662 -0.784 1.038 sum 2.168 8.054 5.301 9.882 Atomic orbital electron populations 1.22262 0.87662 1.02682 0.98441 1.61671 1.07172 1.11111 1.43386 1.22418 1.00827 0.90071 0.99192 1.21130 0.91728 1.00256 0.88927 1.19886 0.95405 0.95328 0.95195 1.20934 0.93063 1.00231 1.00239 1.20982 0.95390 0.99511 0.99325 1.20954 0.99027 0.97568 0.96913 1.21315 0.92385 0.99905 0.99636 1.18681 0.91987 0.94582 0.94273 1.19003 0.90161 0.94780 0.93721 1.21930 0.98718 1.06137 1.00139 1.17719 0.91026 0.88836 0.90197 1.19488 1.08426 1.07645 1.14158 0.90308 1.25878 0.93567 0.96988 0.97478 1.69739 1.16809 1.21566 1.34105 0.86334 0.79233 0.78865 0.82091 1.18984 1.20311 1.18806 1.22145 0.97185 1.01729 1.01104 1.21940 0.96876 0.94528 0.93675 1.67450 1.00322 1.25064 1.30791 0.92629 0.90362 0.97294 0.96918 0.91812 0.92315 0.96988 0.86280 0.87010 0.86912 0.86596 0.85629 0.88038 0.90727 0.86438 0.86452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.57 9.30 60.07 0.56 1.13 16 2 N -0.51 -8.67 3.82 -252.72 -0.97 -9.64 16 3 C 0.02 0.35 9.41 60.06 0.57 0.91 16 4 C 0.11 1.82 4.10 -4.98 -0.02 1.80 16 5 C -0.06 -1.00 4.51 -104.29 -0.47 -1.47 16 6 C -0.13 -1.89 9.23 -39.63 -0.37 -2.25 16 7 C -0.13 -1.86 10.04 -39.52 -0.40 -2.26 16 8 C -0.13 -1.86 10.03 -39.63 -0.40 -2.26 16 9 C -0.11 -2.00 9.41 -39.25 -0.37 -2.37 16 10 C 0.01 0.12 5.87 -104.90 -0.62 -0.50 16 11 C 0.16 3.57 6.64 -83.03 -0.55 3.01 16 12 C -0.25 -5.96 9.24 -38.35 -0.35 -6.32 16 13 C 0.13 3.39 5.53 -106.56 -0.59 2.80 16 14 C -0.47 -12.08 9.10 -37.65 -0.34 -12.42 16 15 H 0.08 1.97 7.88 -52.48 -0.41 1.55 16 16 C 0.08 1.95 5.22 -17.34 -0.09 1.86 16 17 N -0.80 -20.16 11.16 55.55 0.62 -19.54 16 18 Si 0.91 18.35 29.58 -169.99 -5.03 13.32 16 19 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 20 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 21 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 22 C -0.20 -5.00 8.75 -38.66 -0.34 -5.34 16 23 C 0.08 1.87 10.54 -17.70 -0.19 1.68 16 24 N -0.52 -11.54 4.60 -9.94 -0.05 -11.59 16 25 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.08 1.26 6.45 -51.93 -0.34 0.93 16 27 H 0.01 0.12 8.14 -51.93 -0.42 -0.30 16 28 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 29 H 0.06 0.97 6.96 -51.93 -0.36 0.61 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.01 0.19 7.88 -51.93 -0.41 -0.22 16 32 H 0.12 2.26 5.90 -51.93 -0.31 1.96 16 33 H 0.11 1.43 7.98 -52.49 -0.42 1.01 16 34 H 0.11 1.25 8.06 -52.48 -0.42 0.82 16 35 H 0.12 1.40 8.06 -52.48 -0.42 0.97 16 36 H 0.13 2.16 6.22 -52.49 -0.33 1.83 16 37 H 0.10 2.30 6.22 -52.49 -0.33 1.98 16 38 H 0.28 6.53 8.29 -40.82 -0.34 6.19 16 39 H 0.12 3.02 6.55 -52.49 -0.34 2.68 16 40 H 0.12 2.32 7.62 -52.48 -0.40 1.92 16 LS Contribution 324.05 15.07 4.88 4.88 Total: -1.00 -27.13 324.05 -9.81 -36.95 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -5.31 Total: 7.61 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: -3.97 Total: -21.99 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: -0.39 Total: -40.77 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -5.03 Total: 13.32 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -27.13 -9.81 -36.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239681017.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.528 kcal (2) G-P(sol) polarization free energy of solvation -27.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds