Wall clock time and date at job start Tue Mar 31 2020 06:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46900 * 110.99621 * 2 1 4 4 C 1.46899 * 111.00125 * 123.95337 * 2 1 3 5 5 C 1.50702 * 109.47097 * 163.19236 * 4 2 1 6 6 C 1.37938 * 120.07539 * 352.55992 * 5 4 2 7 7 C 1.38387 * 120.15122 * 180.02562 * 6 5 4 8 8 C 1.38431 * 120.30614 * 0.03932 * 7 6 5 9 9 C 1.37889 * 120.15196 * 359.70051 * 8 7 6 10 10 C 1.39662 * 120.07944 * 172.58326 * 5 4 2 11 11 C 1.47820 * 120.15016 * 359.95282 * 10 5 4 12 12 C 1.39672 * 120.65183 * 248.62194 * 11 10 5 13 13 C 1.38393 * 118.47767 * 180.02562 * 12 11 10 14 14 C 1.39059 * 119.72423 * 359.97438 * 13 12 11 15 15 N 1.31274 * 121.33935 * 0.02562 * 14 13 12 16 16 C 1.33698 * 121.63793 * 0.02562 * 15 14 13 17 17 C 1.40821 * 119.94226 * 180.02562 * 16 15 14 18 18 H 1.07997 * 120.00360 * 180.02562 * 17 16 15 19 19 C 1.40158 * 119.99462 * 359.97438 * 17 16 15 20 20 N 1.30689 * 120.00090 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99574 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46801 * 90.00235 * 21 19 17 23 23 H 1.48497 * 109.46794 * 209.99917 * 21 19 17 24 24 H 1.48499 * 109.47128 * 330.00132 * 21 19 17 25 25 H 1.09000 * 109.46804 * 296.04169 * 1 2 3 26 26 H 1.08999 * 109.47217 * 56.04405 * 1 2 3 27 27 H 1.08999 * 109.46360 * 176.04327 * 1 2 3 28 28 H 1.09005 * 109.47321 * 178.30865 * 3 2 1 29 29 H 1.08998 * 109.47695 * 298.30871 * 3 2 1 30 30 H 1.08998 * 109.47128 * 58.31146 * 3 2 1 31 31 H 1.08992 * 109.47013 * 43.18664 * 4 2 1 32 32 H 1.09001 * 109.47074 * 283.18469 * 4 2 1 33 33 H 1.08002 * 119.92757 * 0.02562 * 6 5 4 34 34 H 1.08000 * 119.84581 * 180.02562 * 7 6 5 35 35 H 1.08001 * 119.91863 * 179.97438 * 8 7 6 36 36 H 1.08002 * 120.07527 * 180.29525 * 9 8 7 37 37 H 1.08007 * 120.76022 * 359.97438 * 12 11 10 38 38 H 1.08002 * 120.13361 * 179.97438 * 13 12 11 39 39 H 1.08003 * 119.32810 * 179.72960 * 14 13 12 40 40 H 0.97001 * 119.99580 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 3.4453 -1.0964 0.8928 6 6 4.0213 -0.8169 -0.3290 7 6 5.3524 -1.1201 -0.5557 8 6 6.1147 -1.7062 0.4401 9 6 5.5531 -1.9862 1.6680 10 6 4.2088 -1.6869 1.9022 11 6 3.5986 -1.9889 3.2143 12 6 3.9810 -1.2826 4.3570 13 6 3.3810 -1.6028 5.5623 14 6 2.4214 -2.6082 5.6092 15 7 2.0687 -3.2663 4.5295 16 6 2.6140 -3.0022 3.3377 17 6 2.2086 -3.7300 2.2024 18 1 2.6488 -3.5178 1.2393 19 6 1.2346 -4.7307 2.3226 20 7 0.7023 -4.9878 3.4882 21 14 0.6973 -5.6967 0.8167 22 1 1.5570 -6.8982 0.6668 23 1 -0.7177 -6.1174 0.9776 24 1 0.8255 -4.8424 -0.3911 25 1 -0.3633 0.4512 0.9233 26 1 -0.3633 0.5740 -0.8524 27 1 -0.3632 -1.0253 -0.0709 28 1 3.0847 1.3427 0.0303 29 1 1.6707 1.8854 -0.9047 30 1 1.6216 1.9041 0.8744 31 1 1.4262 -1.6887 1.2489 32 1 1.9069 -0.1723 2.0475 33 1 3.4321 -0.3602 -1.1106 34 1 5.7984 -0.8987 -1.5141 35 1 7.1528 -1.9407 0.2563 36 1 6.1503 -2.4392 2.4456 37 1 4.7285 -0.5050 4.3014 38 1 3.6568 -1.0740 6.4626 39 1 1.9604 -2.8558 6.5540 40 1 0.0285 -5.6806 3.5714 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239683787.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:48 Heat of formation + Delta-G solvation = 64.658220 kcal Electronic energy + Delta-G solvation = -22285.372808 eV Core-core repulsion = 19257.818309 eV Total energy + Delta-G solvation = -3027.554499 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.29032 -37.72896 -36.50388 -33.72482 -32.21403 -30.87964 -30.23039 -28.50113 -27.32178 -26.38263 -25.48700 -22.72656 -22.19452 -21.36122 -20.33948 -19.70179 -17.52013 -16.25692 -15.67069 -15.15129 -14.91293 -14.79973 -14.38296 -14.19567 -14.03563 -13.64394 -13.19681 -12.64084 -12.51667 -12.17974 -12.14854 -12.03740 -11.84220 -11.50888 -11.40480 -11.27256 -11.24941 -11.09887 -11.00266 -10.51499 -10.30034 -10.26621 -9.88608 -9.43636 -8.36738 -8.09973 -8.06483 -7.92666 -7.60685 -7.36343 -6.48484 -4.58716 2.00385 2.11516 2.69354 2.95092 3.05935 3.10861 3.18829 3.90123 4.31091 4.47648 4.68212 5.42128 5.42588 5.55009 5.60273 5.64755 5.73486 5.74698 5.83789 5.85390 6.06170 6.08622 6.09172 6.15122 6.18765 6.26640 6.30919 6.48473 6.51476 6.72308 6.80879 6.86391 6.98190 7.08167 7.13305 7.26292 7.31078 7.42538 7.50470 7.59791 7.67801 7.78734 7.98893 8.20146 8.56990 8.86650 10.02746 10.21381 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.011340 B = 0.008313 C = 0.006955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2468.648068 B = 3367.404048 C = 4024.688703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.546 5.546 3 C 0.019 3.981 4 C 0.093 3.907 5 C -0.069 4.069 6 C -0.107 4.107 7 C -0.148 4.148 8 C -0.129 4.129 9 C -0.123 4.123 10 C 0.024 3.976 11 C -0.234 4.234 12 C -0.036 4.036 13 C -0.321 4.321 14 C 0.129 3.871 15 N -0.482 5.482 16 C 0.270 3.730 17 C -0.417 4.417 18 H 0.090 0.910 19 C 0.070 3.930 20 N -0.709 5.709 21 Si 0.898 3.102 22 H -0.267 1.267 23 H -0.275 1.275 24 H -0.256 1.256 25 H 0.023 0.977 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.021 0.979 31 H 0.111 0.889 32 H 0.043 0.957 33 H 0.128 0.872 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.113 0.887 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.117 0.883 40 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.965 6.649 -5.805 9.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.270 5.270 3 C -0.129 4.129 4 C -0.033 4.033 5 C -0.070 4.070 6 C -0.125 4.125 7 C -0.166 4.166 8 C -0.147 4.147 9 C -0.141 4.141 10 C 0.023 3.977 11 C -0.239 4.239 12 C -0.061 4.061 13 C -0.345 4.345 14 C -0.039 4.039 15 N -0.194 5.194 16 C 0.147 3.853 17 C -0.447 4.447 18 H 0.108 0.892 19 C -0.157 4.157 20 N -0.329 5.329 21 Si 0.722 3.278 22 H -0.192 1.192 23 H -0.200 1.200 24 H -0.180 1.180 25 H 0.042 0.958 26 H 0.081 0.919 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.039 0.961 31 H 0.128 0.872 32 H 0.061 0.939 33 H 0.146 0.854 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.131 0.869 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.135 0.865 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.297 5.601 -6.120 8.397 hybrid contribution 0.238 0.589 0.247 0.682 sum 1.535 6.191 -5.873 8.670 Atomic orbital electron populations 1.22336 0.87555 1.02411 0.99844 1.61937 1.07556 1.13232 1.44245 1.22489 1.01314 0.89230 0.99894 1.21147 0.93134 0.99130 0.89919 1.19883 0.94809 0.98746 0.93546 1.20993 0.94346 1.00218 0.96982 1.21003 0.94757 1.02234 0.98624 1.20904 0.99111 1.00703 0.93957 1.21215 0.94929 1.01145 0.96820 1.18510 0.91932 0.94225 0.93004 1.19345 1.07066 1.05891 0.91553 1.20844 0.96477 0.96472 0.92277 1.21201 1.08395 1.07763 0.97095 1.22578 0.92860 0.91311 0.97134 1.68764 1.26806 1.26283 0.97533 1.18507 0.87060 0.88567 0.91205 1.19653 1.16876 1.13254 0.94907 0.89222 1.26121 0.95691 0.97047 0.96823 1.70113 1.16798 1.22314 1.23665 0.86439 0.78430 0.80527 0.82411 1.19239 1.20024 1.17959 0.95834 0.91912 0.91110 0.90933 0.91995 0.96068 0.87161 0.93925 0.85391 0.87359 0.87314 0.86911 0.88790 0.88840 0.86516 0.91474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.53 60.07 0.57 0.96 16 2 N -0.55 -8.91 3.88 -252.72 -0.98 -9.89 16 3 C 0.02 0.27 8.73 60.06 0.52 0.79 16 4 C 0.09 1.82 4.12 -4.98 -0.02 1.80 16 5 C -0.07 -1.36 4.62 -104.20 -0.48 -1.84 16 6 C -0.11 -1.87 7.91 -39.64 -0.31 -2.19 16 7 C -0.15 -2.39 10.04 -39.46 -0.40 -2.79 16 8 C -0.13 -2.14 10.03 -39.64 -0.40 -2.54 16 9 C -0.12 -2.36 9.78 -39.16 -0.38 -2.74 16 10 C 0.02 0.52 4.33 -104.90 -0.45 0.06 16 11 C -0.23 -5.48 4.51 -104.07 -0.47 -5.95 16 12 C -0.04 -0.81 9.91 -38.99 -0.39 -1.19 16 13 C -0.32 -7.07 10.10 -39.22 -0.40 -7.47 16 14 C 0.13 3.06 11.17 -17.49 -0.20 2.86 16 15 N -0.48 -12.87 7.85 -10.91 -0.09 -12.95 16 16 C 0.27 7.02 6.17 -84.71 -0.52 6.49 16 17 C -0.42 -10.64 6.70 -37.89 -0.25 -10.90 16 18 H 0.09 2.26 6.05 -52.49 -0.32 1.94 16 19 C 0.07 1.72 5.50 -17.32 -0.10 1.62 16 20 N -0.71 -18.23 11.46 55.56 0.64 -17.59 16 21 Si 0.90 18.40 29.56 -169.99 -5.03 13.38 16 22 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 23 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 24 H -0.26 -5.22 7.11 56.52 0.40 -4.81 16 25 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.07 1.06 8.08 -51.93 -0.42 0.64 16 28 H 0.07 1.04 6.11 -51.93 -0.32 0.72 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.11 2.43 5.66 -51.93 -0.29 2.14 16 32 H 0.04 0.89 7.86 -51.93 -0.41 0.48 16 33 H 0.13 2.08 6.22 -52.49 -0.33 1.75 16 34 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16 35 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 36 H 0.11 2.09 8.06 -52.49 -0.42 1.67 16 37 H 0.09 1.87 8.06 -52.48 -0.42 1.45 16 38 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 39 H 0.12 2.46 8.06 -52.48 -0.42 2.04 16 40 H 0.27 6.41 8.29 -40.82 -0.34 6.08 16 LS Contribution 326.42 15.07 4.92 4.92 Total: -1.00 -27.62 326.42 -9.65 -37.27 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -5.45 Total: 7.88 kcal Atomic # 6 Polarization: -19.35 SS G_CDS: -3.67 Total: -23.01 kcal Atomic # 7 Polarization: -40.00 SS G_CDS: -0.43 Total: -40.43 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -5.03 Total: 13.38 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -27.62 -9.65 -37.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239683787.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.928 kcal (2) G-P(sol) polarization free energy of solvation -27.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds