Wall clock time and date at job start Tue Mar 31 2020 06:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46905 * 110.99794 * 2 1 4 4 C 1.46901 * 111.00127 * 123.95015 * 2 1 3 5 5 C 1.50700 * 109.46842 * 163.29789 * 4 2 1 6 6 C 1.37932 * 120.07918 * 352.55304 * 5 4 2 7 7 C 1.38380 * 120.15307 * 179.97438 * 6 5 4 8 8 C 1.38428 * 120.30365 * 0.02735 * 7 6 5 9 9 C 1.37904 * 120.14899 * 359.71852 * 8 7 6 10 10 C 1.39654 * 120.07432 * 172.58003 * 5 4 2 11 11 C 1.47856 * 120.14894 * 359.97438 * 10 5 4 12 12 C 1.39304 * 120.78076 * 248.51900 * 11 10 5 13 13 N 1.31670 * 120.66537 * 179.97438 * 12 11 10 14 14 C 1.32208 * 122.50054 * 359.97438 * 13 12 11 15 15 C 1.36495 * 121.50937 * 359.97438 * 14 13 12 16 16 C 1.41119 * 119.09869 * 0.02562 * 15 14 13 17 17 C 1.40942 * 121.10441 * 179.97438 * 16 15 14 18 18 H 1.07994 * 120.00020 * 210.72844 * 17 16 15 19 19 C 1.40178 * 119.99801 * 30.72086 * 17 16 15 20 20 N 1.30685 * 120.00495 * 15.58876 * 19 17 16 21 21 Si 1.86807 * 119.99853 * 195.58548 * 19 17 16 22 22 H 1.48493 * 109.46877 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.46993 * 120.00292 * 21 19 17 24 24 H 1.48498 * 109.47091 * 240.00101 * 21 19 17 25 25 H 1.08998 * 109.47293 * 296.04426 * 1 2 3 26 26 H 1.08997 * 109.46999 * 56.04699 * 1 2 3 27 27 H 1.09002 * 109.46979 * 176.04552 * 1 2 3 28 28 H 1.08996 * 109.47015 * 188.83106 * 3 2 1 29 29 H 1.09004 * 109.47087 * 308.82905 * 3 2 1 30 30 H 1.08999 * 109.47154 * 68.82704 * 3 2 1 31 31 H 1.09001 * 109.46937 * 43.29858 * 4 2 1 32 32 H 1.09000 * 109.47355 * 283.30208 * 4 2 1 33 33 H 1.08004 * 119.92736 * 0.02820 * 6 5 4 34 34 H 1.08000 * 119.84932 * 180.02562 * 7 6 5 35 35 H 1.07993 * 119.92620 * 180.02562 * 8 7 6 36 36 H 1.07998 * 120.07377 * 180.29840 * 9 8 7 37 37 H 1.08006 * 119.66878 * 0.25403 * 12 11 10 38 38 H 1.07999 * 119.24669 * 179.97438 * 14 13 12 39 39 H 1.07991 * 120.44912 * 179.97438 * 15 14 13 40 40 H 0.96991 * 120.00274 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 3.4460 -1.0941 0.8940 6 6 4.0227 -0.8131 -0.3271 7 6 5.3546 -1.1134 -0.5523 8 6 6.1171 -1.6977 0.4444 9 6 5.5547 -1.9792 1.6716 10 6 4.2093 -1.6840 1.9038 11 6 3.5979 -1.9881 3.2152 12 6 3.9763 -1.2870 4.3580 13 7 3.4300 -1.5594 5.5246 14 6 2.5084 -2.4951 5.6764 15 6 2.0665 -3.2390 4.6207 16 6 2.6082 -3.0017 3.3394 17 6 2.1831 -3.7452 2.2201 18 1 2.8688 -3.9393 1.4086 19 6 0.8702 -4.2330 2.1602 20 7 -0.0407 -3.7587 2.9683 21 14 0.4227 -5.5610 0.9250 22 1 1.6247 -5.9254 0.1328 23 1 -0.0765 -6.7595 1.6458 24 1 -0.6356 -5.0543 0.0149 25 1 -0.3634 0.4512 0.9233 26 1 -0.3633 0.5740 -0.8524 27 1 -0.3633 -1.0252 -0.0709 28 1 3.0736 1.3468 -0.1578 29 1 1.5241 1.9416 -0.8006 30 1 1.7791 1.8437 0.9583 31 1 1.4275 -1.6897 1.2477 32 1 1.9050 -0.1731 2.0478 33 1 3.4336 -0.3569 -1.1090 34 1 5.8013 -0.8909 -1.5101 35 1 7.1561 -1.9290 0.2621 36 1 6.1520 -2.4306 2.4500 37 1 4.7221 -0.5092 4.2855 38 1 2.0958 -2.6751 6.6581 39 1 1.3132 -3.9994 4.7642 40 1 -0.9491 -4.0959 2.9266 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239683979.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:23 Heat of formation + Delta-G solvation = 53.299870 kcal Electronic energy + Delta-G solvation = -22370.289765 eV Core-core repulsion = 19342.242730 eV Total energy + Delta-G solvation = -3028.047034 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.29678 -37.88502 -36.46090 -34.23007 -32.17623 -30.76405 -30.28802 -28.38061 -27.25930 -26.40728 -25.66630 -22.68137 -22.16771 -21.51282 -20.34297 -19.68369 -17.62408 -16.18263 -15.60849 -15.15705 -14.92589 -14.74653 -14.51024 -14.35495 -14.00617 -13.62735 -13.16469 -12.72404 -12.48419 -12.34875 -12.25109 -12.07310 -11.92494 -11.53624 -11.48113 -11.37896 -11.32551 -11.16055 -10.91880 -10.68077 -10.28389 -10.23565 -9.81105 -9.44770 -8.36364 -8.04255 -8.02937 -7.94642 -7.77915 -7.44450 -6.95133 -4.67398 1.99691 2.12773 2.66322 2.74875 2.99542 3.05846 3.16636 3.80908 4.37893 4.48432 4.55943 5.44036 5.46708 5.50316 5.57591 5.64442 5.69031 5.75184 5.77276 5.83132 5.93201 6.12979 6.14976 6.21540 6.26443 6.28699 6.35099 6.56582 6.73899 6.77589 6.83632 6.90401 7.02886 7.06335 7.14360 7.27639 7.32346 7.40351 7.49421 7.62592 7.71372 7.83822 8.01315 8.36920 8.60754 8.67038 9.53461 9.96249 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.011075 B = 0.008760 C = 0.007070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2527.503005 B = 3195.567551 C = 3959.706308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.546 5.546 3 C 0.018 3.982 4 C 0.094 3.906 5 C -0.058 4.058 6 C -0.110 4.110 7 C -0.145 4.145 8 C -0.131 4.131 9 C -0.123 4.123 10 C 0.020 3.980 11 C -0.227 4.227 12 C 0.124 3.876 13 N -0.575 5.575 14 C 0.081 3.919 15 C -0.204 4.204 16 C 0.151 3.849 17 C -0.444 4.444 18 H 0.085 0.915 19 C 0.082 3.918 20 N -0.783 5.783 21 Si 0.903 3.097 22 H -0.257 1.257 23 H -0.271 1.271 24 H -0.271 1.271 25 H 0.023 0.977 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.022 0.978 31 H 0.117 0.883 32 H 0.042 0.958 33 H 0.128 0.872 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.113 0.887 37 H 0.120 0.880 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.773 3.804 -6.272 7.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.270 5.270 3 C -0.130 4.130 4 C -0.032 4.032 5 C -0.059 4.059 6 C -0.128 4.128 7 C -0.164 4.164 8 C -0.149 4.149 9 C -0.141 4.141 10 C 0.018 3.982 11 C -0.232 4.232 12 C -0.034 4.034 13 N -0.289 5.289 14 C -0.068 4.068 15 C -0.226 4.226 16 C 0.143 3.857 17 C -0.475 4.475 18 H 0.103 0.897 19 C -0.139 4.139 20 N -0.408 5.408 21 Si 0.726 3.274 22 H -0.180 1.180 23 H -0.196 1.196 24 H -0.196 1.196 25 H 0.041 0.959 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.078 0.922 30 H 0.040 0.960 31 H 0.134 0.866 32 H 0.060 0.940 33 H 0.146 0.854 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.131 0.869 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.136 0.864 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.898 4.022 -5.855 7.353 hybrid contribution -0.908 -0.764 -0.505 1.290 sum 0.990 3.258 -6.360 7.215 Atomic orbital electron populations 1.22307 0.87613 1.02308 0.99709 1.61942 1.07514 1.13140 1.44404 1.22506 1.01406 0.89386 0.99705 1.21154 0.93035 0.99406 0.89611 1.19883 0.94796 0.97918 0.93269 1.21010 0.94340 1.00381 0.97108 1.21009 0.94741 1.02023 0.98592 1.20887 0.99092 1.00961 0.93980 1.21212 0.94864 1.01220 0.96835 1.18465 0.91919 0.94860 0.92915 1.19592 1.07997 1.03343 0.92278 1.22074 0.96675 0.96772 0.87843 1.67316 1.14253 1.21296 1.26015 1.21706 0.94264 0.93100 0.97709 1.21795 1.04633 1.03389 0.92808 1.17690 0.87595 0.87753 0.92668 1.19503 0.96289 1.27936 1.03742 0.89733 1.25940 0.96206 0.95593 0.96131 1.69738 1.03215 1.34879 1.32934 0.86316 0.79678 0.80718 0.80639 1.18043 1.19591 1.19650 0.95855 0.92075 0.91242 0.90938 0.92183 0.95976 0.86570 0.94030 0.85373 0.87389 0.87332 0.86901 0.86279 0.86496 0.86388 0.90507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 9.53 60.07 0.57 1.02 16 2 N -0.55 -9.26 3.89 -252.71 -0.98 -10.24 16 3 C 0.02 0.27 8.88 60.07 0.53 0.80 16 4 C 0.09 1.89 4.13 -4.98 -0.02 1.87 16 5 C -0.06 -1.15 5.33 -104.21 -0.56 -1.71 16 6 C -0.11 -1.94 7.92 -39.64 -0.31 -2.25 16 7 C -0.15 -2.34 10.04 -39.46 -0.40 -2.74 16 8 C -0.13 -2.16 10.03 -39.63 -0.40 -2.55 16 9 C -0.12 -2.31 9.78 -39.16 -0.38 -2.69 16 10 C 0.02 0.41 4.45 -104.89 -0.47 -0.06 16 11 C -0.23 -5.22 4.51 -104.04 -0.47 -5.69 16 12 C 0.12 2.83 10.94 -17.22 -0.19 2.64 16 13 N -0.57 -13.66 10.32 -13.36 -0.14 -13.80 16 14 C 0.08 1.88 11.09 -18.02 -0.20 1.68 16 15 C -0.20 -5.00 8.69 -39.12 -0.34 -5.34 16 16 C 0.15 3.71 5.11 -106.26 -0.54 3.16 16 17 C -0.44 -10.76 6.23 -37.83 -0.24 -10.99 16 18 H 0.08 2.10 7.50 -52.49 -0.39 1.71 16 19 C 0.08 1.87 5.00 -17.31 -0.09 1.79 16 20 N -0.78 -18.37 11.32 55.56 0.63 -17.74 16 21 Si 0.90 17.76 29.59 -169.99 -5.03 12.73 16 22 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 23 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 24 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 25 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.79 8.07 -51.93 -0.42 0.37 16 27 H 0.07 1.13 8.08 -51.93 -0.42 0.71 16 28 H 0.07 1.05 6.03 -51.93 -0.31 0.74 16 29 H 0.06 0.74 8.04 -51.93 -0.42 0.32 16 30 H 0.02 0.33 8.01 -51.93 -0.42 -0.09 16 31 H 0.12 2.66 5.63 -51.93 -0.29 2.37 16 32 H 0.04 0.91 7.77 -51.93 -0.40 0.51 16 33 H 0.13 2.11 6.10 -52.48 -0.32 1.79 16 34 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 35 H 0.11 1.49 8.06 -52.49 -0.42 1.06 16 36 H 0.11 2.02 8.06 -52.49 -0.42 1.60 16 37 H 0.12 2.45 8.06 -52.48 -0.42 2.03 16 38 H 0.12 2.42 8.06 -52.49 -0.42 2.00 16 39 H 0.12 2.92 6.67 -52.49 -0.35 2.57 16 40 H 0.28 6.10 8.29 -40.82 -0.34 5.76 16 LS Contribution 326.71 15.07 4.92 4.92 Total: -1.00 -25.74 326.71 -9.51 -35.24 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -5.42 Total: 9.94 kcal Atomic # 6 Polarization: -17.55 SS G_CDS: -3.49 Total: -21.05 kcal Atomic # 7 Polarization: -41.29 SS G_CDS: -0.49 Total: -41.78 kcal Atomic # 14 Polarization: 17.76 SS G_CDS: -5.03 Total: 12.73 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -25.74 -9.51 -35.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239683979.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.544 kcal (2) G-P(sol) polarization free energy of solvation -25.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds