Wall clock time and date at job start Tue Mar 31 2020 06:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46896 * 111.00361 * 2 1 4 4 C 1.46904 * 111.00199 * 123.95658 * 2 1 3 5 5 C 1.50708 * 109.47120 * 164.14326 * 4 2 1 6 6 C 1.37952 * 120.07213 * 105.70364 * 5 4 2 7 7 C 1.38370 * 120.14307 * 180.02562 * 6 5 4 8 8 C 1.38418 * 120.29649 * 359.95578 * 7 6 5 9 9 C 1.37906 * 120.14773 * 0.02562 * 8 7 6 10 10 C 1.39596 * 120.07148 * 285.72735 * 5 4 2 11 11 C 1.47964 * 120.14911 * 359.95294 * 10 5 4 12 12 C 1.40263 * 120.34500 * 123.53161 * 11 10 5 13 13 C 1.36685 * 118.60666 * 179.77515 * 12 11 10 14 14 C 1.40876 * 119.25163 * 0.48085 * 13 12 11 15 15 C 1.40993 * 119.67958 * 179.74341 * 14 13 12 16 16 H 1.07999 * 119.99889 * 0.02562 * 15 14 13 17 17 C 1.40102 * 119.99752 * 180.02562 * 15 14 13 18 18 N 1.30715 * 120.00436 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00136 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47089 * 89.99693 * 19 17 15 21 21 H 1.48495 * 109.47235 * 210.00162 * 19 17 15 22 22 H 1.48499 * 109.47020 * 329.99861 * 19 17 15 23 23 N 1.33779 * 120.63699 * 359.75644 * 14 13 12 24 24 C 1.31188 * 121.50423 * 0.02562 * 23 14 13 25 25 H 1.09006 * 109.46759 * 296.04348 * 1 2 3 26 26 H 1.08996 * 109.47119 * 56.04404 * 1 2 3 27 27 H 1.08996 * 109.46891 * 176.04777 * 1 2 3 28 28 H 1.09003 * 109.47667 * 188.61830 * 3 2 1 29 29 H 1.09003 * 109.47233 * 308.61901 * 3 2 1 30 30 H 1.09000 * 109.47175 * 68.61880 * 3 2 1 31 31 H 1.08997 * 109.47037 * 44.14833 * 4 2 1 32 32 H 1.08996 * 109.46943 * 284.14312 * 4 2 1 33 33 H 1.08002 * 119.92790 * 0.02562 * 6 5 4 34 34 H 1.08004 * 119.84795 * 179.97438 * 7 6 5 35 35 H 1.08002 * 119.92724 * 179.74542 * 8 7 6 36 36 H 1.07996 * 120.07561 * 179.97438 * 9 8 7 37 37 H 1.08002 * 120.69767 * 0.02562 * 12 11 10 38 38 H 1.07997 * 120.37419 * 180.23834 * 13 12 11 39 39 H 0.96996 * 120.00276 * 180.02562 * 18 17 15 40 40 H 1.08004 * 119.65306 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 3.4515 -1.0764 0.9034 6 6 4.4250 -0.3941 1.6033 7 6 5.7623 -0.6775 1.3891 8 6 6.1327 -1.6468 0.4730 9 6 5.1696 -2.3366 -0.2330 10 6 3.8181 -2.0546 -0.0226 11 6 2.7793 -2.7908 -0.7765 12 6 2.7891 -2.7924 -2.1791 13 6 1.8153 -3.4880 -2.8395 14 6 0.8316 -4.1694 -2.0960 15 6 -0.1803 -4.8852 -2.7681 16 1 -0.1984 -4.9097 -3.8476 17 6 -1.1622 -5.5648 -2.0353 18 7 -1.1400 -5.5356 -0.7287 19 14 -2.5033 -6.5126 -2.9256 20 1 -2.0559 -7.9108 -3.1496 21 1 -3.7387 -6.5142 -2.1017 22 1 -2.7814 -5.8664 -4.2334 23 7 0.8481 -4.1435 -0.7586 24 6 1.7722 -3.4883 -0.0970 25 1 -0.3633 0.4512 0.9234 26 1 -0.3633 0.5740 -0.8524 27 1 -0.3633 -1.0252 -0.0708 28 1 3.0743 1.3465 -0.1540 29 1 1.5269 1.9405 -0.8029 30 1 1.7760 1.8448 0.9569 31 1 1.4373 -1.6968 1.2383 32 1 1.8913 -0.1792 2.0501 33 1 4.1427 0.3629 2.3200 34 1 6.5206 -0.1401 1.9393 35 1 7.1784 -1.8603 0.3075 36 1 5.4598 -3.0923 -0.9478 37 1 3.5524 -2.2587 -2.7258 38 1 1.7978 -3.5117 -3.9190 39 1 -1.8196 -6.0064 -0.2214 40 1 1.7568 -3.4871 0.9830 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239684862.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:53 Heat of formation + Delta-G solvation = 63.506682 kcal Electronic energy + Delta-G solvation = -21820.685780 eV Core-core repulsion = 18793.081347 eV Total energy + Delta-G solvation = -3027.604434 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.34775 -37.70167 -36.57186 -33.77531 -31.81642 -31.25941 -30.38113 -28.77743 -27.23676 -26.44738 -25.41583 -22.45098 -22.24626 -21.40956 -20.76326 -19.79925 -17.46906 -16.25330 -15.72359 -15.22030 -15.12171 -14.97069 -14.23726 -14.21671 -13.95223 -13.82342 -13.37169 -12.67924 -12.43581 -12.19821 -12.07901 -12.02664 -11.99724 -11.62620 -11.32899 -11.25559 -11.20775 -11.09683 -11.00167 -10.65458 -10.53086 -10.23634 -9.83929 -9.39346 -8.49380 -8.37261 -8.12794 -7.90116 -7.53542 -7.25281 -6.42730 -4.49897 1.76486 1.83103 2.77413 3.06683 3.09352 3.13325 3.22318 3.91437 4.12917 4.56343 4.75047 5.21962 5.25252 5.41683 5.47355 5.47795 5.59193 5.67500 5.82304 5.85365 5.89633 6.01228 6.02325 6.07862 6.11332 6.20994 6.24007 6.37584 6.51182 6.58088 6.79428 6.85311 6.88929 6.94021 7.10591 7.18780 7.37984 7.42119 7.47374 7.48039 7.67003 7.84226 8.06498 8.21206 8.63803 8.92938 10.10888 10.27802 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.021751 B = 0.005053 C = 0.004530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.009237 B = 5540.179011 C = 6179.111092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.525 5.525 3 C 0.028 3.972 4 C 0.097 3.903 5 C -0.086 4.086 6 C -0.114 4.114 7 C -0.150 4.150 8 C -0.119 4.119 9 C -0.130 4.130 10 C 0.042 3.958 11 C -0.249 4.249 12 C -0.027 4.027 13 C -0.273 4.273 14 C 0.257 3.743 15 C -0.424 4.424 16 H 0.083 0.917 17 C 0.069 3.931 18 N -0.710 5.710 19 Si 0.906 3.094 20 H -0.269 1.269 21 H -0.276 1.276 22 H -0.261 1.261 23 N -0.485 5.485 24 C 0.149 3.851 25 H 0.016 0.984 26 H 0.063 0.937 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.017 0.983 31 H 0.092 0.908 32 H 0.030 0.970 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.116 0.884 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.273 0.727 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.468 8.154 3.595 10.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.248 5.248 3 C -0.121 4.121 4 C -0.030 4.030 5 C -0.087 4.087 6 C -0.133 4.133 7 C -0.168 4.168 8 C -0.137 4.137 9 C -0.148 4.148 10 C 0.041 3.959 11 C -0.255 4.255 12 C -0.051 4.051 13 C -0.295 4.295 14 C 0.133 3.867 15 C -0.455 4.455 16 H 0.101 0.899 17 C -0.157 4.157 18 N -0.331 5.331 19 Si 0.730 3.270 20 H -0.194 1.194 21 H -0.201 1.201 22 H -0.185 1.185 23 N -0.197 5.197 24 C -0.018 4.018 25 H 0.034 0.966 26 H 0.082 0.918 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.035 0.965 31 H 0.110 0.890 32 H 0.048 0.952 33 H 0.127 0.873 34 H 0.128 0.872 35 H 0.130 0.870 36 H 0.134 0.866 37 H 0.109 0.891 38 H 0.114 0.886 39 H 0.084 0.916 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 4.780 7.368 3.752 9.550 hybrid contribution -0.080 0.567 -0.091 0.580 sum 4.700 7.935 3.660 9.922 Atomic orbital electron populations 1.22354 0.87186 1.03041 0.99274 1.61802 1.07432 1.12595 1.42980 1.22371 1.01085 0.89325 0.99277 1.21109 0.92723 0.98832 0.90346 1.19855 0.94397 0.96558 0.97888 1.20851 0.92866 0.99658 0.99886 1.20905 0.95599 0.99890 1.00390 1.20963 0.98710 0.96896 0.97158 1.21339 0.92534 1.00369 1.00607 1.18740 0.92394 0.92153 0.92625 1.18834 1.01841 1.11735 0.93066 1.20447 0.96321 0.95542 0.92798 1.21349 1.01056 1.08465 0.98644 1.18563 0.90587 0.89263 0.88245 1.19634 1.06807 1.24685 0.94369 0.89895 1.26096 0.98670 0.96107 0.94829 1.70122 1.28373 1.28290 1.06338 0.86355 0.79947 0.80284 0.80434 1.19377 1.20099 1.18512 1.68766 1.22564 1.20208 1.08119 1.22518 0.89404 0.91990 0.97917 0.96570 0.91843 0.90577 0.91561 0.92028 0.96490 0.88952 0.95217 0.87291 0.87179 0.87047 0.86570 0.89095 0.88601 0.91583 0.86973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 9.53 60.06 0.57 1.05 16 2 N -0.53 -8.90 4.84 -252.72 -1.22 -10.12 16 3 C 0.03 0.40 9.40 60.06 0.56 0.96 16 4 C 0.10 1.63 4.42 -4.97 -0.02 1.60 16 5 C -0.09 -1.47 4.68 -104.22 -0.49 -1.96 16 6 C -0.11 -1.69 9.40 -39.64 -0.37 -2.06 16 7 C -0.15 -2.09 10.04 -39.47 -0.40 -2.48 16 8 C -0.12 -1.74 10.03 -39.64 -0.40 -2.14 16 9 C -0.13 -2.23 9.64 -39.18 -0.38 -2.61 16 10 C 0.04 0.80 5.42 -104.88 -0.57 0.23 16 11 C -0.25 -5.42 4.84 -104.46 -0.51 -5.93 16 12 C -0.03 -0.61 9.71 -39.38 -0.38 -1.00 16 13 C -0.27 -6.62 9.76 -39.15 -0.38 -7.00 16 14 C 0.26 6.88 6.55 -84.98 -0.56 6.32 16 15 C -0.42 -11.13 9.12 -37.84 -0.35 -11.47 16 16 H 0.08 2.04 7.85 -52.49 -0.41 1.63 16 17 C 0.07 1.71 5.50 -17.33 -0.10 1.62 16 18 N -0.71 -18.46 11.44 55.55 0.64 -17.82 16 19 Si 0.91 18.22 29.56 -169.99 -5.02 13.20 16 20 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 21 H -0.28 -5.44 7.11 56.52 0.40 -5.03 16 22 H -0.26 -5.18 7.11 56.52 0.40 -4.77 16 23 N -0.48 -12.93 7.83 -10.84 -0.08 -13.02 16 24 C 0.15 3.51 9.14 -17.13 -0.16 3.35 16 25 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 26 H 0.06 0.96 8.07 -51.93 -0.42 0.54 16 27 H 0.08 1.44 8.09 -51.93 -0.42 1.02 16 28 H 0.07 0.96 7.41 -51.93 -0.38 0.58 16 29 H 0.06 0.81 8.04 -51.93 -0.42 0.39 16 30 H 0.02 0.21 8.02 -51.93 -0.42 -0.20 16 31 H 0.09 1.72 4.92 -51.93 -0.26 1.46 16 32 H 0.03 0.45 7.77 -51.93 -0.40 0.04 16 33 H 0.11 1.38 7.99 -52.49 -0.42 0.96 16 34 H 0.11 1.24 8.06 -52.48 -0.42 0.82 16 35 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 36 H 0.12 1.93 8.06 -52.49 -0.42 1.51 16 37 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 38 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 39 H 0.27 6.43 8.29 -40.82 -0.34 6.09 16 40 H 0.11 2.48 6.95 -52.48 -0.36 2.12 16 LS Contribution 334.02 15.07 5.03 5.03 Total: -1.00 -27.96 334.02 -10.16 -38.12 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -5.58 Total: 6.12 kcal Atomic # 6 Polarization: -17.59 SS G_CDS: -3.91 Total: -21.50 kcal Atomic # 7 Polarization: -40.29 SS G_CDS: -0.67 Total: -40.96 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -5.02 Total: 13.20 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -27.96 -10.16 -38.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239684862.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.623 kcal (2) G-P(sol) polarization free energy of solvation -27.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds