Wall clock time and date at job start Tue Mar 31 2020 05:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50696 * 109.47026 * 2 1 4 4 C 1.38408 * 119.84003 * 269.72167 * 3 2 1 5 5 C 1.50707 * 119.92458 * 0.02562 * 4 3 2 6 6 C 1.37916 * 120.15484 * 179.76709 * 4 3 2 7 7 C 1.39691 * 119.84011 * 0.50765 * 6 4 3 8 8 C 1.47801 * 120.15441 * 179.72538 * 7 6 4 9 9 N 1.32858 * 120.24946 * 44.37666 * 8 7 6 10 10 C 1.31997 * 120.07989 * 179.97438 * 9 8 7 11 11 C 1.39196 * 120.59230 * 0.02716 * 10 9 8 12 12 N 1.31607 * 120.49988 * 359.97438 * 11 10 9 13 13 C 1.33974 * 119.90020 * 359.68890 * 12 11 10 14 14 C 1.40797 * 120.28824 * 180.29772 * 13 12 11 15 15 H 1.08007 * 120.00173 * 190.61569 * 14 13 12 16 16 C 1.40175 * 119.99954 * 10.61924 * 14 13 12 17 17 N 1.30678 * 119.99925 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99896 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47252 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47338 * 119.99655 * 18 16 14 21 21 H 1.48499 * 109.47205 * 239.99926 * 18 16 14 22 22 C 1.39697 * 119.69900 * 359.74731 * 7 6 4 23 23 C 1.37917 * 119.84178 * 359.97438 * 22 7 6 24 24 C 1.50699 * 119.92357 * 180.02562 * 23 22 7 25 25 H 1.09000 * 109.47043 * 60.00666 * 1 2 3 26 26 H 1.08996 * 109.46747 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47417 * 300.00538 * 1 2 3 28 28 H 1.09001 * 109.46603 * 119.99636 * 2 1 3 29 29 H 1.08997 * 109.47417 * 239.99462 * 2 1 3 30 30 H 1.08994 * 109.46633 * 90.00457 * 5 4 3 31 31 H 1.08999 * 109.47034 * 210.00270 * 5 4 3 32 32 H 1.08999 * 109.47093 * 330.00390 * 5 4 3 33 33 H 1.07997 * 120.08284 * 180.25494 * 6 4 3 34 34 H 1.07999 * 119.70320 * 179.97438 * 10 9 8 35 35 H 1.08001 * 119.75128 * 179.97438 * 11 10 9 36 36 H 0.97000 * 119.99560 * 180.02562 * 17 16 14 37 37 H 1.07998 * 120.08136 * 179.97438 * 22 7 6 38 38 H 1.08999 * 109.47131 * 269.97934 * 24 23 22 39 39 H 1.08992 * 109.46889 * 29.98366 * 24 23 22 40 40 H 1.09003 * 109.46735 * 149.97684 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2674 2.0681 -1.2006 5 6 2.0199 1.3507 -2.5026 6 6 2.7226 3.3700 -1.2082 7 6 2.9564 4.0316 -0.0003 8 6 3.4500 5.4248 -0.0004 9 7 2.9172 6.3236 -0.8210 10 6 3.3603 7.5670 -0.8179 11 6 4.3866 7.9512 0.0403 12 7 4.9309 7.0798 0.8628 13 6 4.4920 5.8141 0.8810 14 6 5.0642 4.8767 1.7620 15 1 4.8329 3.8268 1.6583 16 6 5.9342 5.3060 2.7738 17 7 6.2145 6.5762 2.8991 18 14 6.6928 4.0624 3.9431 19 1 6.2183 2.6996 3.5924 20 1 8.1726 4.1158 3.8308 21 1 6.2902 4.3829 5.3361 22 6 2.7221 3.3704 1.2077 23 6 2.2615 2.0705 1.2004 24 6 2.0075 1.3556 2.5025 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 0.9915 1.5208 -2.8212 31 1 2.7031 1.7304 -3.2622 32 1 2.1860 0.2822 -2.3660 33 1 2.9017 3.8754 -2.1456 34 1 2.9231 8.2925 -1.4879 35 1 4.7389 8.9721 0.0312 36 1 6.8168 6.8732 3.5990 37 1 2.9012 3.8759 2.1451 38 1 2.9148 0.8397 2.8168 39 1 1.7189 2.0797 3.2643 40 1 1.2050 0.6302 2.3682 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240738976.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:16 Heat of formation + Delta-G solvation = 41.795343 kcal Electronic energy + Delta-G solvation = -21745.537413 eV Core-core repulsion = 18716.991506 eV Total energy + Delta-G solvation = -3028.545908 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.57348 -38.59475 -34.36107 -34.14594 -33.11150 -32.01786 -30.90670 -28.86717 -26.86166 -26.50007 -25.75916 -23.91248 -22.15510 -21.68379 -20.10748 -19.41673 -17.68849 -16.21829 -15.65813 -15.54688 -15.00257 -14.77239 -14.20740 -13.81565 -13.41602 -13.28813 -13.00599 -12.89503 -12.73047 -12.57234 -12.34572 -12.22115 -11.97686 -11.54535 -11.53639 -11.44717 -11.41354 -11.10017 -10.83033 -10.66747 -10.34684 -10.23291 -10.07927 -9.80529 -9.58620 -9.20097 -8.22585 -7.86566 -7.56908 -7.31426 -6.62695 -4.73495 1.78567 2.08197 2.53631 2.93767 2.97279 3.02728 3.14751 3.77384 4.38140 4.57329 5.07108 5.16497 5.33624 5.38510 5.39406 5.53795 5.68932 5.69885 5.77364 5.81906 5.86900 5.95531 5.98593 6.01611 6.02301 6.11886 6.14582 6.21403 6.27487 6.37547 6.40457 6.47942 6.69940 6.80226 6.84050 6.91140 7.04960 7.22963 7.26505 7.49149 7.62099 7.74142 8.00184 8.31851 8.58233 9.17773 9.75673 10.01611 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.014758 B = 0.006648 C = 0.004932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.833636 B = 4210.953393 C = 5675.860795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.083 4.083 3 C -0.104 4.104 4 C -0.091 4.091 5 C -0.109 4.109 6 C -0.110 4.110 7 C 0.030 3.970 8 C -0.028 4.028 9 N -0.413 5.413 10 C -0.118 4.118 11 C 0.086 3.914 12 N -0.454 5.454 13 C 0.222 3.778 14 C -0.404 4.404 15 H 0.102 0.898 16 C 0.066 3.934 17 N -0.707 5.707 18 Si 0.907 3.093 19 H -0.254 1.254 20 H -0.269 1.269 21 H -0.269 1.269 22 C -0.103 4.103 23 C -0.089 4.089 24 C -0.111 4.111 25 H 0.054 0.946 26 H 0.050 0.950 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.114 0.886 34 H 0.128 0.872 35 H 0.130 0.870 36 H 0.279 0.721 37 H 0.131 0.869 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.248 -9.858 -1.495 11.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.120 4.120 3 C -0.104 4.104 4 C -0.091 4.091 5 C -0.166 4.166 6 C -0.129 4.129 7 C 0.028 3.972 8 C -0.175 4.175 9 N -0.125 5.125 10 C -0.279 4.279 11 C -0.085 4.085 12 N -0.171 5.171 13 C 0.097 3.903 14 C -0.435 4.435 15 H 0.120 0.880 16 C -0.162 4.162 17 N -0.327 5.327 18 Si 0.730 3.270 19 H -0.177 1.177 20 H -0.194 1.194 21 H -0.194 1.194 22 C -0.122 4.122 23 C -0.090 4.090 24 C -0.168 4.168 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.133 0.867 34 H 0.145 0.855 35 H 0.148 0.852 36 H 0.090 0.910 37 H 0.149 0.851 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.090 -9.675 -1.340 11.014 hybrid contribution 0.480 -0.008 0.440 0.651 sum -4.611 -9.683 -0.899 10.762 Atomic orbital electron populations 1.21719 0.95416 1.00811 1.02208 1.20512 0.95673 0.93642 1.02151 1.19375 1.03068 0.95797 0.92193 1.19475 1.00988 0.94414 0.94246 1.20768 1.01428 0.99742 0.94630 1.21041 1.00788 0.93388 0.97677 1.18283 0.95047 0.91496 0.92348 1.20191 1.01621 0.92954 1.02727 1.67695 1.24851 1.01782 1.18140 1.22556 1.04357 0.94027 1.07002 1.23527 0.93390 0.99300 0.92234 1.69516 1.26357 1.01587 1.19613 1.19240 0.89521 0.90558 0.90977 1.19933 1.19816 0.95337 1.08365 0.88047 1.26220 0.95610 0.95914 0.98418 1.70042 1.22257 1.15382 1.24994 0.86240 0.79478 0.81574 0.79702 1.17695 1.19445 1.19442 1.21273 0.98631 0.93781 0.98486 1.19512 1.00685 0.94509 0.94245 1.20777 1.01394 0.99968 0.94654 0.92700 0.93107 0.92638 0.91480 0.91333 0.91899 0.92157 0.91778 0.86746 0.85473 0.85242 0.90999 0.85119 0.91705 0.91862 0.91886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.75 37.16 0.36 -1.24 16 2 C -0.08 -1.03 4.96 -27.88 -0.14 -1.17 16 3 C -0.10 -1.68 5.14 -104.50 -0.54 -2.22 16 4 C -0.09 -1.56 5.87 -104.67 -0.61 -2.17 16 5 C -0.11 -1.45 9.60 36.01 0.35 -1.10 16 6 C -0.11 -2.22 9.33 -39.16 -0.37 -2.59 16 7 C 0.03 0.67 5.28 -104.90 -0.55 0.12 16 8 C -0.03 -0.72 6.42 -82.10 -0.53 -1.24 16 9 N -0.41 -10.33 10.31 -8.97 -0.09 -10.42 16 10 C -0.12 -2.75 11.22 -17.12 -0.19 -2.94 16 11 C 0.09 2.06 11.22 -17.29 -0.19 1.87 16 12 N -0.45 -12.31 8.12 -10.73 -0.09 -12.40 16 13 C 0.22 5.97 6.50 -84.56 -0.55 5.42 16 14 C -0.40 -10.31 7.45 -37.89 -0.28 -10.59 16 15 H 0.10 2.47 5.37 -52.48 -0.28 2.18 16 16 C 0.07 1.59 5.49 -17.32 -0.10 1.49 16 17 N -0.71 -17.94 11.55 55.56 0.64 -17.30 16 18 Si 0.91 17.69 29.56 -169.99 -5.02 12.67 16 19 H -0.25 -4.85 7.11 56.52 0.40 -4.45 16 20 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 21 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 22 C -0.10 -2.12 7.19 -39.15 -0.28 -2.40 16 23 C -0.09 -1.56 5.87 -104.68 -0.61 -2.18 16 24 C -0.11 -1.56 9.18 36.01 0.33 -1.23 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.64 7.39 -51.93 -0.38 0.25 16 28 H 0.07 0.78 6.69 -51.93 -0.35 0.43 16 29 H 0.07 0.78 5.92 -51.93 -0.31 0.48 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.77 8.08 -51.93 -0.42 0.35 16 32 H 0.06 0.74 5.92 -51.93 -0.31 0.43 16 33 H 0.11 2.32 8.06 -52.49 -0.42 1.90 16 34 H 0.13 2.53 8.06 -52.49 -0.42 2.10 16 35 H 0.13 2.63 8.06 -52.49 -0.42 2.21 16 36 H 0.28 6.34 8.29 -40.82 -0.34 6.00 16 37 H 0.13 2.80 6.73 -52.49 -0.35 2.45 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.06 0.86 8.08 -51.93 -0.42 0.44 16 40 H 0.06 0.75 5.83 -51.93 -0.30 0.45 16 LS Contribution 326.38 15.07 4.92 4.92 Total: -1.00 -29.20 326.38 -8.77 -37.97 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -5.22 Total: 6.73 kcal Atomic # 6 Polarization: -18.26 SS G_CDS: -3.91 Total: -22.17 kcal Atomic # 7 Polarization: -40.58 SS G_CDS: 0.46 Total: -40.12 kcal Atomic # 14 Polarization: 17.69 SS G_CDS: -5.02 Total: 12.67 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.20 -8.77 -37.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240738976.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.764 kcal (2) G-P(sol) polarization free energy of solvation -29.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds