Wall clock time and date at job start Tue Mar 31 2020 05:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50695 * 109.47386 * 2 1 4 4 C 1.38343 * 119.87063 * 269.72223 * 3 2 1 5 5 C 1.50699 * 119.93495 * 0.02562 * 4 3 2 6 6 C 1.38005 * 120.12325 * 179.76631 * 4 3 2 7 7 C 1.39385 * 119.87286 * 0.48517 * 6 4 3 8 8 C 1.48298 * 120.12917 * 179.79078 * 7 6 4 9 9 C 1.40027 * 119.99081 * 184.97904 * 8 7 6 10 10 N 1.32183 * 120.29589 * 179.97438 * 9 8 7 11 11 C 1.31884 * 120.28623 * 0.02562 * 10 9 8 12 12 C 1.40829 * 119.96285 * 359.97438 * 11 10 9 13 13 C 1.41323 * 120.14438 * 179.97438 * 12 11 10 14 14 H 1.07995 * 120.00432 * 353.82049 * 13 12 11 15 15 C 1.40052 * 119.99825 * 173.81726 * 13 12 11 16 16 N 1.30727 * 120.00423 * 6.34845 * 15 13 12 17 17 Si 1.86805 * 119.99874 * 186.34767 * 15 13 12 18 18 H 1.48490 * 109.47364 * 94.98638 * 17 15 13 19 19 H 1.48510 * 109.46678 * 214.98629 * 17 15 13 20 20 H 1.48493 * 109.47129 * 334.98119 * 17 15 13 21 21 N 1.32520 * 119.98131 * 4.70087 * 8 7 6 22 22 C 1.39395 * 119.75055 * 359.76794 * 7 6 4 23 23 C 1.38005 * 119.87205 * 0.02562 * 22 7 6 24 24 C 1.50695 * 119.93798 * 180.02562 * 23 22 7 25 25 H 1.09001 * 109.47150 * 300.00334 * 1 2 3 26 26 H 1.09002 * 109.47245 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46679 * 60.00369 * 1 2 3 28 28 H 1.09000 * 109.46926 * 120.00091 * 2 1 3 29 29 H 1.09001 * 109.47150 * 239.99665 * 2 1 3 30 30 H 1.08996 * 109.46955 * 90.00284 * 5 4 3 31 31 H 1.09002 * 109.47273 * 209.99880 * 5 4 3 32 32 H 1.08996 * 109.47525 * 329.99845 * 5 4 3 33 33 H 1.08000 * 120.06263 * 180.25542 * 6 4 3 34 34 H 1.07997 * 119.85539 * 359.97438 * 9 8 7 35 35 H 1.07993 * 120.02213 * 179.97438 * 11 10 9 36 36 H 0.97002 * 120.00823 * 179.97438 * 16 15 13 37 37 H 1.07997 * 120.06757 * 180.02562 * 22 7 6 38 38 H 1.09005 * 109.47474 * 269.97481 * 24 23 22 39 39 H 1.09002 * 109.47461 * 29.97257 * 24 23 22 40 40 H 1.09006 * 109.47258 * 149.97376 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2676 2.0684 -1.1996 5 6 2.0203 1.3519 -2.5021 6 6 2.7231 3.3711 -1.2057 7 6 2.9558 4.0308 -0.0002 8 6 3.4497 5.4292 -0.0001 9 6 3.7818 6.0541 1.2081 10 7 4.2231 7.3001 1.2152 11 6 4.3540 7.9657 0.0842 12 6 4.0233 7.3483 -1.1376 13 6 4.1616 8.0582 -2.3518 14 1 4.4252 9.1054 -2.3381 15 6 3.9570 7.4036 -3.5729 16 7 3.5180 6.1723 -3.5890 17 14 4.3112 8.2899 -5.1786 18 1 5.6845 7.9572 -5.6352 19 1 3.3299 7.8611 -6.2076 20 1 4.2005 9.7559 -4.9697 21 7 3.5818 6.0849 -1.1441 22 6 2.7221 3.3715 1.2055 23 6 2.2625 2.0702 1.1995 24 6 2.0088 1.3562 2.5021 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 -0.8901 28 1 1.8933 -0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 0.9920 1.5222 -2.8209 31 1 2.7037 1.7321 -3.2614 32 1 2.1864 0.2833 -2.3663 33 1 2.9024 3.8771 -2.1428 34 1 3.6769 5.5158 2.1385 35 1 4.7145 8.9836 0.0949 36 1 3.3759 5.7190 -4.4347 37 1 2.9003 3.8779 2.1426 38 1 2.9165 0.8414 2.8171 39 1 1.7193 2.0807 3.2633 40 1 1.2070 0.6299 2.3682 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240740049.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:20 Heat of formation + Delta-G solvation = 40.159493 kcal Electronic energy + Delta-G solvation = -21414.366124 eV Core-core repulsion = 18385.749280 eV Total energy + Delta-G solvation = -3028.616844 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.66400 -38.65887 -34.53825 -34.02285 -33.25207 -32.03200 -30.85924 -28.96614 -27.01965 -26.59976 -25.68848 -24.00787 -22.25563 -21.76970 -20.15230 -19.46235 -17.55920 -16.20623 -15.74072 -15.49992 -15.02840 -14.75591 -14.47301 -13.96062 -13.39760 -13.27569 -13.14300 -12.95916 -12.94964 -12.55228 -12.41746 -12.14598 -11.93618 -11.65285 -11.52649 -11.46449 -11.37677 -11.12940 -10.93724 -10.77566 -10.53398 -10.30064 -10.14837 -9.87409 -9.54831 -9.29653 -8.34498 -8.03997 -7.48367 -7.30269 -6.57166 -4.73430 1.47499 1.92787 2.63749 2.99016 3.00398 3.03297 3.15434 3.81003 4.24818 4.68130 4.94859 5.03394 5.15300 5.24716 5.33410 5.43975 5.56318 5.63375 5.73473 5.75200 5.77769 5.79525 5.88109 5.95731 5.98281 6.00984 6.04179 6.13850 6.26464 6.29574 6.35264 6.40935 6.62205 6.72087 6.81952 6.96687 7.01793 7.09193 7.19025 7.38494 7.56142 7.64685 8.00191 8.36987 8.61164 9.19467 9.77364 10.08253 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.018408 B = 0.005173 C = 0.004109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.710683 B = 5411.132327 C = 6813.361041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.085 4.085 3 C -0.091 4.091 4 C -0.095 4.095 5 C -0.111 4.111 6 C -0.079 4.079 7 C -0.017 4.017 8 C 0.137 3.863 9 C -0.107 4.107 10 N -0.430 5.430 11 C -0.063 4.063 12 C 0.208 3.792 13 C -0.414 4.414 14 H 0.091 0.909 15 C 0.068 3.932 16 N -0.711 5.711 17 Si 0.913 3.087 18 H -0.268 1.268 19 H -0.275 1.275 20 H -0.259 1.259 21 N -0.442 5.442 22 C -0.110 4.110 23 C -0.095 4.095 24 C -0.110 4.110 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.149 0.851 34 H 0.128 0.872 35 H 0.134 0.866 36 H 0.276 0.724 37 H 0.121 0.879 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.092 -11.118 1.922 12.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.122 4.122 3 C -0.091 4.091 4 C -0.095 4.095 5 C -0.167 4.167 6 C -0.098 4.098 7 C -0.018 4.018 8 C -0.010 4.010 9 C -0.266 4.266 10 N -0.142 5.142 11 C -0.233 4.233 12 C 0.082 3.918 13 C -0.445 4.445 14 H 0.109 0.891 15 C -0.159 4.159 16 N -0.332 5.332 17 Si 0.736 3.264 18 H -0.193 1.193 19 H -0.200 1.200 20 H -0.183 1.183 21 N -0.159 5.159 22 C -0.129 4.129 23 C -0.095 4.095 24 C -0.167 4.167 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.167 0.833 34 H 0.145 0.855 35 H 0.151 0.849 36 H 0.087 0.913 37 H 0.139 0.861 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.155 -11.286 1.769 12.156 hybrid contribution 0.211 0.527 -0.687 0.891 sum -3.945 -10.759 1.082 11.510 Atomic orbital electron populations 1.21721 0.95185 1.01019 1.02311 1.20550 0.95872 0.93439 1.02341 1.19488 1.01526 0.95826 0.92271 1.19670 1.00796 0.94677 0.94393 1.20783 1.01836 0.99470 0.94609 1.21520 0.95910 0.92770 0.99596 1.18656 0.98188 0.92081 0.92908 1.20677 0.95603 0.93089 0.91597 1.22519 1.13360 0.93787 0.96926 1.67667 1.08600 1.07310 1.30599 1.23214 1.10135 1.00610 0.89347 1.19376 0.89874 0.89196 0.93396 1.19643 1.38361 0.97454 0.89088 0.89075 1.26115 0.93482 0.94930 1.01342 1.70048 1.25168 1.10066 1.27897 0.86215 0.79109 0.80752 0.80278 1.19304 1.19953 1.18291 1.69526 1.15143 1.07557 1.23686 1.21056 1.00281 0.93995 0.97599 1.19463 1.01313 0.94320 0.94423 1.20768 1.01503 1.00013 0.94409 0.92631 0.92921 0.92542 0.91406 0.91068 0.91707 0.91618 0.91855 0.83325 0.85482 0.84877 0.91252 0.86065 0.91745 0.91905 0.91685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.75 37.16 0.36 -1.15 16 2 C -0.08 -0.98 4.96 -27.89 -0.14 -1.12 16 3 C -0.09 -1.37 5.14 -104.55 -0.54 -1.91 16 4 C -0.10 -1.61 5.88 -104.67 -0.61 -2.22 16 5 C -0.11 -1.51 9.60 36.01 0.35 -1.17 16 6 C -0.08 -1.63 9.23 -39.24 -0.36 -1.99 16 7 C -0.02 -0.36 5.87 -104.90 -0.62 -0.98 16 8 C 0.14 3.41 6.73 -82.76 -0.56 2.85 16 9 C -0.11 -2.59 10.61 -16.73 -0.18 -2.77 16 10 N -0.43 -10.89 10.47 -12.06 -0.13 -11.01 16 11 C -0.06 -1.61 10.98 -16.55 -0.18 -1.79 16 12 C 0.21 5.62 6.54 -84.84 -0.56 5.07 16 13 C -0.41 -10.57 9.15 -37.73 -0.35 -10.92 16 14 H 0.09 2.14 7.85 -52.49 -0.41 1.73 16 15 C 0.07 1.63 5.49 -17.34 -0.10 1.54 16 16 N -0.71 -17.75 11.51 55.55 0.64 -17.11 16 17 Si 0.91 17.67 29.56 -169.99 -5.03 12.64 16 18 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 19 H -0.27 -5.22 7.11 56.52 0.40 -4.81 16 20 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 21 N -0.44 -11.94 7.18 -7.50 -0.05 -12.00 16 22 C -0.11 -2.00 9.07 -39.24 -0.36 -2.35 16 23 C -0.10 -1.48 5.87 -104.68 -0.61 -2.09 16 24 C -0.11 -1.30 9.18 36.00 0.33 -0.97 16 25 H 0.05 0.59 7.39 -51.93 -0.38 0.21 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.71 6.69 -51.93 -0.35 0.36 16 29 H 0.07 0.77 5.92 -51.93 -0.31 0.46 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.91 8.09 -51.93 -0.42 0.49 16 32 H 0.06 0.73 5.93 -51.93 -0.31 0.42 16 33 H 0.15 3.39 7.56 -52.49 -0.40 2.99 16 34 H 0.13 2.68 6.22 -52.49 -0.33 2.36 16 35 H 0.13 3.04 8.06 -52.49 -0.42 2.62 16 36 H 0.28 6.21 8.29 -40.82 -0.34 5.87 16 37 H 0.12 2.04 6.22 -52.49 -0.33 1.71 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 40 H 0.06 0.67 5.83 -51.93 -0.30 0.37 16 LS Contribution 328.79 15.07 4.95 4.95 Total: -1.00 -28.92 328.79 -8.92 -37.84 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -5.20 Total: 6.67 kcal Atomic # 6 Polarization: -17.87 SS G_CDS: -4.11 Total: -21.98 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: 0.46 Total: -40.13 kcal Atomic # 14 Polarization: 17.67 SS G_CDS: -5.03 Total: 12.64 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.92 -8.92 -37.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240740049.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.997 kcal (2) G-P(sol) polarization free energy of solvation -28.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds