Wall clock time and date at job start Tue Mar 31 2020 05:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50698 * 109.46767 * 2 1 4 4 C 1.38409 * 119.85351 * 90.00166 * 3 2 1 5 5 C 1.50704 * 119.91989 * 0.02562 * 4 3 2 6 6 C 1.37918 * 120.15468 * 180.02562 * 4 3 2 7 7 C 1.39655 * 119.84384 * 359.97438 * 6 4 3 8 8 C 1.47937 * 120.14322 * 180.02562 * 7 6 4 9 9 C 1.40435 * 120.78777 * 179.97438 * 8 7 6 10 10 N 1.31586 * 119.09117 * 179.97438 * 9 8 7 11 11 C 1.33648 * 120.83359 * 0.02562 * 10 9 8 12 12 C 1.41087 * 119.13400 * 179.97438 * 11 10 9 13 13 H 1.08004 * 119.99579 * 180.02562 * 12 11 10 14 14 C 1.40145 * 120.00396 * 0.02562 * 12 11 10 15 15 N 1.30664 * 119.99610 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00211 * 180.02562 * 14 12 11 17 17 H 1.48490 * 109.47144 * 89.99724 * 16 14 12 18 18 H 1.48502 * 109.46803 * 210.00144 * 16 14 12 19 19 H 1.48501 * 109.47058 * 329.99644 * 16 14 12 20 20 N 1.33643 * 121.73192 * 359.97438 * 11 10 9 21 21 C 1.31591 * 120.83217 * 0.02562 * 20 11 10 22 22 C 1.39654 * 119.70616 * 0.26633 * 7 6 4 23 23 C 1.37916 * 119.85066 * 359.45463 * 22 7 6 24 24 C 1.50693 * 119.92689 * 180.27575 * 23 22 7 25 25 H 1.09000 * 109.47466 * 60.00051 * 1 2 3 26 26 H 1.08997 * 109.47099 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47166 * 299.99648 * 1 2 3 28 28 H 1.08996 * 109.46725 * 240.00513 * 2 1 3 29 29 H 1.08995 * 109.47028 * 119.99793 * 2 1 3 30 30 H 1.09002 * 109.46599 * 270.01745 * 5 4 3 31 31 H 1.08994 * 109.47560 * 30.01774 * 5 4 3 32 32 H 1.09003 * 109.46776 * 150.02284 * 5 4 3 33 33 H 1.07992 * 120.07714 * 180.02562 * 6 4 3 34 34 H 1.07994 * 120.45298 * 359.70484 * 9 8 7 35 35 H 0.96998 * 119.99556 * 180.02562 * 15 14 12 36 36 H 1.07992 * 120.45515 * 180.02562 * 21 20 11 37 37 H 1.08008 * 120.07384 * 179.70635 * 22 7 6 38 38 H 1.09003 * 109.47126 * 270.29306 * 24 23 22 39 39 H 1.08999 * 109.47743 * 30.29828 * 24 23 22 40 40 H 1.09000 * 109.47286 * 150.29939 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2619 2.0704 1.2004 5 6 2.0097 1.3549 2.5026 6 6 2.7211 3.3709 1.2077 7 6 2.9548 4.0322 0.0000 8 6 3.4478 5.4269 0.0000 9 6 3.6879 6.1045 -1.2064 10 7 4.1257 7.3448 -1.1674 11 6 4.3421 7.9585 0.0000 12 6 4.8123 9.2887 0.0000 13 1 4.9923 9.7978 0.9353 14 6 5.0459 9.9494 -1.2137 15 7 4.8276 9.3336 -2.3452 16 14 5.6691 11.7104 -1.2137 17 1 7.1540 11.7099 -1.2139 18 1 5.1740 12.4106 -2.4260 19 1 5.1745 12.4105 -0.0010 20 7 4.1248 7.3452 1.1674 21 6 3.6869 6.1049 1.2064 22 6 2.7162 3.3726 -1.2076 23 6 2.2626 2.0701 -1.2005 24 6 2.0105 1.3547 -2.5026 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 0.9797 1.5243 2.8165 31 1 2.1776 0.2863 2.3685 32 1 2.6893 1.7368 3.2645 33 1 2.9002 3.8764 2.1450 34 1 3.5196 5.6130 -2.1531 35 1 4.9896 9.7908 -3.1852 36 1 3.5130 5.6153 2.1531 37 1 2.8904 3.8799 -2.1451 38 1 0.9807 1.5245 -2.8170 39 1 2.6906 1.7360 -3.2643 40 1 2.1778 0.2860 -2.3683 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240740850.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:25 Heat of formation + Delta-G solvation = 44.515544 kcal Electronic energy + Delta-G solvation = -20952.386798 eV Core-core repulsion = 17923.958847 eV Total energy + Delta-G solvation = -3028.427951 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.66170 -38.67206 -34.72031 -33.70495 -33.34194 -31.90836 -31.19802 -29.04987 -27.17308 -26.47881 -26.05507 -23.40070 -22.77321 -21.74351 -20.11712 -19.52459 -17.97595 -16.38327 -15.97428 -15.46705 -14.85518 -14.60032 -14.47810 -14.01005 -13.35513 -13.21813 -13.13207 -13.04449 -12.76450 -12.74357 -12.66576 -12.10170 -12.09763 -11.97278 -11.67332 -11.46904 -11.40317 -11.16507 -10.89562 -10.84557 -10.54692 -10.33496 -10.30622 -9.66134 -9.25828 -9.19556 -8.74776 -8.12533 -7.42340 -7.27077 -6.69893 -4.82222 1.52949 1.86164 2.68235 2.92637 2.96802 3.01038 3.06658 3.75858 4.21785 4.61665 4.93062 5.01268 5.21399 5.21623 5.31167 5.41310 5.55059 5.58638 5.66623 5.72209 5.72794 5.79442 5.83427 5.85537 5.89574 5.90854 6.01688 6.04263 6.10426 6.19869 6.22894 6.27926 6.44736 6.64916 6.79042 6.85479 6.98624 7.02763 7.11851 7.46295 7.48456 7.61823 8.00302 8.33620 8.41511 8.98379 9.94654 10.13784 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.035623 B = 0.003533 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.818693 B = 7924.289075 C = 8591.157240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.082 4.082 3 C -0.125 4.125 4 C -0.071 4.071 5 C -0.113 4.113 6 C -0.149 4.149 7 C 0.041 3.959 8 C -0.328 4.328 9 C 0.181 3.819 10 N -0.508 5.508 11 C 0.379 3.621 12 C -0.377 4.377 13 H 0.097 0.903 14 C 0.060 3.940 15 N -0.697 5.697 16 Si 0.923 3.077 17 H -0.265 1.265 18 H -0.273 1.273 19 H -0.257 1.257 20 N -0.594 5.594 21 C 0.187 3.813 22 C -0.147 4.147 23 C -0.071 4.071 24 C -0.113 4.113 25 H 0.054 0.946 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.116 0.884 34 H 0.131 0.869 35 H 0.279 0.721 36 H 0.132 0.868 37 H 0.117 0.883 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.025 -13.018 1.053 13.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.119 4.119 3 C -0.125 4.125 4 C -0.071 4.071 5 C -0.169 4.169 6 C -0.167 4.167 7 C 0.039 3.961 8 C -0.338 4.338 9 C 0.004 3.996 10 N -0.224 5.224 11 C 0.147 3.853 12 C -0.410 4.410 13 H 0.115 0.885 14 C -0.169 4.169 15 N -0.317 5.317 16 Si 0.746 3.254 17 H -0.190 1.190 18 H -0.198 1.198 19 H -0.181 1.181 20 N -0.312 5.312 21 C 0.012 3.988 22 C -0.165 4.165 23 C -0.071 4.071 24 C -0.170 4.170 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.134 0.866 34 H 0.148 0.852 35 H 0.091 0.909 36 H 0.149 0.851 37 H 0.135 0.865 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.613 -11.830 0.789 12.722 hybrid contribution -0.079 -0.170 -0.110 0.218 sum -4.692 -12.000 0.679 12.903 Atomic orbital electron populations 1.21706 0.95420 1.00842 1.02143 1.20519 0.95696 0.93618 1.02094 1.19306 1.04933 0.96105 0.92143 1.19488 0.99186 0.94201 0.94251 1.20813 1.01596 0.99923 0.94608 1.20951 1.03942 0.94259 0.97577 1.18645 0.93010 0.92163 0.92293 1.19767 1.21877 0.95661 0.96534 1.23060 0.89713 0.91167 0.95630 1.69349 1.16890 1.07640 1.28544 1.19966 0.89170 0.93929 0.82250 1.19511 1.33014 0.94270 0.94200 0.88539 1.26238 0.94620 1.01031 0.94974 1.70125 1.26687 1.36403 0.98450 0.86066 0.79765 0.80323 0.79295 1.19018 1.19776 1.18101 1.68651 1.21628 1.10120 1.30781 1.22685 0.89807 0.90410 0.95869 1.20978 1.03701 0.94189 0.97680 1.19496 0.99125 0.94176 0.94262 1.20815 1.01641 0.99900 0.94628 0.92733 0.93098 0.92755 0.91426 0.91443 0.91707 0.91669 0.91982 0.86635 0.85173 0.90947 0.85110 0.86510 0.91684 0.91925 0.91674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.89 37.16 0.37 -1.06 16 2 C -0.08 -0.91 5.24 -27.88 -0.15 -1.05 16 3 C -0.12 -1.78 5.14 -104.49 -0.54 -2.32 16 4 C -0.07 -1.06 5.87 -104.67 -0.61 -1.68 16 5 C -0.11 -1.30 9.60 36.01 0.35 -0.96 16 6 C -0.15 -2.56 9.10 -39.17 -0.36 -2.92 16 7 C 0.04 0.79 5.88 -104.87 -0.62 0.17 16 8 C -0.33 -7.38 5.94 -104.27 -0.62 -8.00 16 9 C 0.18 4.36 10.70 -16.83 -0.18 4.18 16 10 N -0.51 -13.93 7.83 -12.41 -0.10 -14.03 16 11 C 0.38 10.61 7.35 -158.17 -1.16 9.45 16 12 C -0.38 -10.09 9.35 -37.79 -0.35 -10.44 16 13 H 0.10 2.46 7.85 -52.48 -0.41 2.05 16 14 C 0.06 1.47 5.50 -17.33 -0.10 1.38 16 15 N -0.70 -17.76 11.40 55.56 0.63 -17.13 16 16 Si 0.92 17.83 29.56 -169.99 -5.02 12.81 16 17 H -0.27 -5.05 7.11 56.52 0.40 -4.64 16 18 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 19 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 20 N -0.59 -15.69 10.34 -12.41 -0.13 -15.82 16 21 C 0.19 4.34 10.70 -16.83 -0.18 4.16 16 22 C -0.15 -2.57 9.10 -39.17 -0.36 -2.93 16 23 C -0.07 -1.07 5.87 -104.68 -0.61 -1.68 16 24 C -0.11 -1.34 9.59 36.00 0.35 -0.99 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.69 5.93 -51.93 -0.31 0.38 16 29 H 0.07 0.68 5.93 -51.93 -0.31 0.37 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.66 5.93 -51.93 -0.31 0.35 16 32 H 0.06 0.68 8.08 -51.93 -0.42 0.26 16 33 H 0.12 1.87 6.29 -52.49 -0.33 1.54 16 34 H 0.13 2.77 6.33 -52.49 -0.33 2.44 16 35 H 0.28 6.34 8.29 -40.82 -0.34 6.00 16 36 H 0.13 2.58 6.33 -52.49 -0.33 2.25 16 37 H 0.12 1.97 6.29 -52.48 -0.33 1.64 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.71 8.08 -51.93 -0.42 0.29 16 40 H 0.06 0.67 5.93 -51.93 -0.31 0.36 16 LS Contribution 327.27 15.07 4.93 4.93 Total: -1.00 -29.51 327.27 -9.52 -39.03 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -5.06 Total: 4.91 kcal Atomic # 6 Polarization: -9.92 SS G_CDS: -4.78 Total: -14.69 kcal Atomic # 7 Polarization: -47.39 SS G_CDS: 0.41 Total: -46.98 kcal Atomic # 14 Polarization: 17.83 SS G_CDS: -5.02 Total: 12.81 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.51 -9.52 -39.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240740850.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.542 kcal (2) G-P(sol) polarization free energy of solvation -29.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds