Wall clock time and date at job start Tue Mar 31 2020 05:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47315 * 2 1 4 4 C 1.52994 * 109.47088 * 179.97438 * 3 2 1 5 5 C 1.50705 * 109.47277 * 179.97438 * 4 3 2 6 6 C 1.38407 * 119.84447 * 89.99368 * 5 4 3 7 7 C 1.37909 * 120.15261 * 179.97438 * 6 5 4 8 8 C 1.39701 * 119.84641 * 0.03320 * 7 6 5 9 9 C 1.47785 * 120.15414 * 179.97438 * 8 7 6 10 10 N 1.32867 * 120.25149 * 314.47376 * 9 8 7 11 11 C 1.31999 * 120.07999 * 180.30119 * 10 9 8 12 12 C 1.39195 * 120.59268 * 359.71373 * 11 10 9 13 13 N 1.31605 * 120.49935 * 0.02562 * 12 11 10 14 14 C 1.33972 * 119.90354 * 359.97438 * 13 12 11 15 15 C 1.40799 * 120.29020 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99863 * 164.23913 * 15 14 13 17 17 C 1.40174 * 119.99710 * 344.24047 * 15 14 13 18 18 N 1.30686 * 119.99906 * 203.52635 * 17 15 14 19 19 Si 1.86795 * 120.00217 * 23.25219 * 17 15 14 20 20 H 1.48499 * 109.47189 * 275.48149 * 19 17 15 21 21 H 1.48505 * 109.46995 * 35.47815 * 19 17 15 22 22 H 1.48500 * 109.47534 * 155.47957 * 19 17 15 23 23 C 1.39697 * 119.69122 * 0.24364 * 8 7 6 24 24 C 1.37914 * 119.84098 * 359.47555 * 23 8 7 25 25 H 1.08998 * 109.47188 * 300.00217 * 1 2 3 26 26 H 1.08999 * 109.46723 * 60.00229 * 1 2 3 27 27 H 1.08996 * 109.47426 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47598 * 239.99434 * 2 1 3 29 29 H 1.09010 * 109.46857 * 119.99298 * 2 1 3 30 30 H 1.08998 * 109.47170 * 59.99772 * 3 2 1 31 31 H 1.08999 * 109.47039 * 299.99578 * 3 2 1 32 32 H 1.08998 * 109.47567 * 59.99592 * 4 3 2 33 33 H 1.09003 * 109.47678 * 299.99677 * 4 3 2 34 34 H 1.07998 * 119.92397 * 359.97438 * 6 5 4 35 35 H 1.07997 * 120.07996 * 180.02562 * 7 6 5 36 36 H 1.08002 * 119.70483 * 179.68152 * 11 10 9 37 37 H 1.07998 * 119.75263 * 179.97438 * 12 11 10 38 38 H 0.96997 * 120.00231 * 179.72336 * 18 17 15 39 39 H 1.07996 * 120.07468 * 179.74225 * 23 8 7 40 40 H 1.08005 * 119.91769 * 180.25246 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0724 2.8633 0.0000 6 6 4.3015 3.5134 1.2002 7 6 4.7617 4.8134 1.2071 8 6 4.9962 5.4743 -0.0012 9 6 5.4889 6.8676 -0.0018 10 7 4.9396 7.7722 0.8015 11 6 5.3784 9.0171 0.7939 12 6 6.4209 9.3956 -0.0471 13 7 6.9851 8.5174 -0.8484 14 6 6.5556 7.2484 -0.8570 15 6 7.1537 6.3019 -1.7107 16 1 6.9932 5.2470 -1.5442 17 6 7.9575 6.7289 -2.7767 18 7 8.1346 5.9528 -3.8132 19 14 8.7693 8.4103 -2.7194 20 1 7.8127 9.4385 -3.2020 21 1 9.1666 8.7207 -1.3225 22 1 9.9738 8.4084 -3.5879 23 6 4.7573 4.8139 -1.2088 24 6 4.3026 3.5119 -1.2007 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6767 1.9563 0.8899 31 1 1.6768 1.9563 -0.8900 32 1 3.9338 0.9284 -0.8890 33 1 3.9331 0.9288 0.8909 34 1 4.1193 3.0015 2.1336 35 1 4.9404 5.3194 2.1443 36 1 4.9240 9.7487 1.4457 37 1 6.7689 10.4180 -0.0425 38 1 8.6876 6.2499 -4.5527 39 1 4.9325 5.3203 -2.1464 40 1 4.1214 2.9988 -2.1337 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241051823.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:35 Heat of formation + Delta-G solvation = 25.105913 kcal Electronic energy + Delta-G solvation = -20942.285852 eV Core-core repulsion = 17913.016236 eV Total energy + Delta-G solvation = -3029.269616 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.58826 -38.43136 -35.68441 -34.26596 -33.06521 -32.17250 -30.57727 -30.19372 -27.94776 -26.25699 -24.38699 -22.70983 -22.00856 -21.57756 -21.08293 -20.08673 -17.94513 -16.43803 -16.27386 -15.59010 -15.29954 -14.80628 -14.36567 -14.18839 -14.02854 -13.63537 -13.36721 -12.92859 -12.84030 -12.70669 -12.54665 -12.31096 -11.93396 -11.75298 -11.48595 -11.27210 -11.17441 -11.13614 -11.01126 -10.68272 -10.59928 -10.28506 -10.23533 -9.79423 -9.46687 -9.26317 -8.47236 -8.23285 -7.74931 -7.44071 -7.16590 -4.90064 1.67508 2.11373 2.35369 2.66037 3.28862 3.32286 3.50695 4.21917 4.30986 4.43419 4.83297 4.90113 5.07495 5.23290 5.26517 5.30954 5.36001 5.59151 5.61270 5.67351 5.72145 5.72452 5.80890 5.83933 5.96374 5.98161 6.08915 6.10339 6.18321 6.21038 6.37345 6.40233 6.45873 6.57550 6.72271 6.76066 6.91995 7.08515 7.20242 7.40062 7.47445 7.67343 7.87565 8.18384 8.24590 8.85393 9.31038 9.66276 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.022266 B = 0.004232 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.196714 B = 6615.294958 C = 7565.392815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.114 4.114 4 C -0.074 4.074 5 C -0.101 4.101 6 C -0.126 4.126 7 C -0.104 4.104 8 C 0.014 3.986 9 C -0.003 4.003 10 N -0.404 5.404 11 C -0.121 4.121 12 C 0.111 3.889 13 N -0.543 5.543 14 C 0.204 3.796 15 C -0.382 4.382 16 H 0.111 0.889 17 C 0.081 3.919 18 N -0.767 5.767 19 Si 0.992 3.008 20 H -0.276 1.276 21 H -0.255 1.255 22 H -0.324 1.324 23 C -0.088 4.088 24 C -0.121 4.121 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.111 0.889 35 H 0.115 0.885 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.295 0.705 39 H 0.132 0.868 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.298 -7.097 3.856 10.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.152 4.152 4 C -0.112 4.112 5 C -0.102 4.102 6 C -0.144 4.144 7 C -0.123 4.123 8 C 0.013 3.987 9 C -0.152 4.152 10 N -0.115 5.115 11 C -0.280 4.280 12 C -0.056 4.056 13 N -0.264 5.264 14 C 0.081 3.919 15 C -0.412 4.412 16 H 0.128 0.872 17 C -0.146 4.146 18 N -0.387 5.387 19 Si 0.824 3.176 20 H -0.203 1.203 21 H -0.180 1.180 22 H -0.257 1.257 23 C -0.107 4.107 24 C -0.139 4.139 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.129 0.871 35 H 0.133 0.867 36 H 0.152 0.848 37 H 0.154 0.846 38 H 0.106 0.894 39 H 0.150 0.850 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -7.234 -7.219 3.631 10.846 hybrid contribution 0.434 0.854 -0.044 0.959 sum -6.800 -6.365 3.587 9.981 Atomic orbital electron populations 1.21777 0.96135 1.01245 1.01862 1.21560 0.95648 0.97238 1.01825 1.21612 0.94941 0.96167 1.02462 1.20530 0.95124 0.93323 1.02208 1.19748 1.01291 0.95800 0.93315 1.20748 1.01842 0.94935 0.96861 1.21167 0.99603 0.94081 0.97493 1.18276 0.96421 0.91315 0.92711 1.20035 0.99886 0.93174 1.02140 1.67738 1.25284 1.01586 1.16921 1.22452 1.03818 0.94033 1.07685 1.23181 0.92483 0.98227 0.91692 1.67664 1.29555 1.03308 1.25898 1.19203 0.91164 0.89846 0.91671 1.19669 1.20617 0.95822 1.05114 0.87156 1.26527 0.93237 1.01853 0.92970 1.69605 1.26142 1.38736 1.04206 0.84700 0.75728 0.78789 0.78360 1.20261 1.18026 1.25680 1.21407 0.96726 0.94259 0.98345 1.20828 1.01203 0.94970 0.96940 0.92815 0.92757 0.93059 0.92115 0.92200 0.91947 0.91843 0.91462 0.91635 0.87079 0.86681 0.84762 0.84650 0.89419 0.85042 0.86751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.91 37.16 0.37 -0.93 16 2 C -0.13 -1.16 5.93 -26.73 -0.16 -1.32 16 3 C -0.11 -1.27 5.20 -26.73 -0.14 -1.41 16 4 C -0.07 -0.92 5.34 -27.88 -0.15 -1.07 16 5 C -0.10 -1.61 5.14 -104.50 -0.54 -2.15 16 6 C -0.13 -2.09 9.68 -39.64 -0.38 -2.48 16 7 C -0.10 -2.03 9.69 -39.16 -0.38 -2.41 16 8 C 0.01 0.31 5.20 -104.90 -0.55 -0.23 16 9 C 0.00 -0.08 6.40 -82.11 -0.53 -0.60 16 10 N -0.40 -9.50 10.32 -8.97 -0.09 -9.59 16 11 C -0.12 -2.59 11.22 -17.12 -0.19 -2.78 16 12 C 0.11 2.41 11.22 -17.29 -0.19 2.22 16 13 N -0.54 -13.49 5.07 -10.73 -0.05 -13.54 16 14 C 0.20 5.21 6.43 -84.56 -0.54 4.66 16 15 C -0.38 -9.83 7.79 -37.89 -0.30 -10.13 16 16 H 0.11 2.88 6.01 -52.49 -0.32 2.57 16 17 C 0.08 2.03 5.50 -17.31 -0.10 1.94 16 18 N -0.77 -18.91 13.92 55.56 0.77 -18.14 16 19 Si 0.99 22.82 25.59 -169.99 -4.35 18.47 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.26 -6.08 6.58 56.52 0.37 -5.71 16 22 H -0.32 -7.18 7.11 56.52 0.40 -6.78 16 23 C -0.09 -1.83 7.65 -39.16 -0.30 -2.13 16 24 C -0.12 -2.14 9.68 -39.64 -0.38 -2.52 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.79 8.08 -51.93 -0.42 0.37 16 33 H 0.06 0.75 8.08 -51.93 -0.42 0.33 16 34 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 35 H 0.12 2.20 8.06 -52.49 -0.42 1.77 16 36 H 0.13 2.41 8.06 -52.49 -0.42 1.98 16 37 H 0.14 2.40 8.06 -52.49 -0.42 1.98 16 38 H 0.30 6.60 8.29 -40.82 -0.34 6.26 16 39 H 0.13 2.90 6.95 -52.49 -0.36 2.54 16 40 H 0.11 1.78 8.06 -52.48 -0.42 1.36 16 LS Contribution 332.37 15.07 5.01 5.01 Total: -1.00 -27.64 332.37 -8.92 -36.56 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -5.76 Total: 2.56 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: -4.45 Total: -21.33 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: 0.63 Total: -41.27 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -4.35 Total: 18.47 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -27.64 -8.92 -36.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241051823.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.671 kcal (2) G-P(sol) polarization free energy of solvation -27.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds