Wall clock time and date at job start Tue Mar 31 2020 05:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53009 * 109.47299 * 2 1 4 4 C 1.53002 * 109.46851 * 179.97438 * 3 2 1 5 5 C 1.50704 * 109.46777 * 179.97438 * 4 3 2 6 6 C 1.38327 * 119.87320 * 90.00299 * 5 4 3 7 7 C 1.37996 * 120.12837 * 179.97438 * 6 5 4 8 8 C 1.39388 * 119.87361 * 359.97438 * 7 6 5 9 9 C 1.48304 * 120.13105 * 179.97438 * 8 7 6 10 10 C 1.40035 * 119.97995 * 4.98214 * 9 8 7 11 11 N 1.32184 * 120.29106 * 180.02562 * 10 9 8 12 12 C 1.31886 * 120.28341 * 359.72096 * 11 10 9 13 13 C 1.40826 * 119.96587 * 0.53159 * 12 11 10 14 14 C 1.41327 * 120.14584 * 179.74781 * 13 12 11 15 15 H 1.07999 * 120.00108 * 16.82912 * 14 13 12 16 16 C 1.40046 * 119.99827 * 196.82890 * 14 13 12 17 17 N 1.30738 * 119.99859 * 189.47454 * 16 14 13 18 18 Si 1.86803 * 120.00370 * 9.47432 * 16 14 13 19 19 H 1.48493 * 109.47407 * 270.00281 * 18 16 14 20 20 H 1.48505 * 109.46670 * 30.00223 * 18 16 14 21 21 H 1.48499 * 109.47153 * 149.99777 * 18 16 14 22 22 N 1.32514 * 119.98680 * 185.00278 * 9 8 7 23 23 C 1.39398 * 119.74714 * 0.27585 * 8 7 6 24 24 C 1.38004 * 119.86987 * 359.42517 * 23 8 7 25 25 H 1.08998 * 109.47332 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46983 * 300.00411 * 1 2 3 27 27 H 1.09001 * 109.46719 * 59.99740 * 1 2 3 28 28 H 1.08999 * 109.47279 * 239.99574 * 2 1 3 29 29 H 1.09004 * 109.47488 * 119.99776 * 2 1 3 30 30 H 1.08995 * 109.46855 * 60.00181 * 3 2 1 31 31 H 1.09000 * 109.46708 * 299.99783 * 3 2 1 32 32 H 1.09004 * 109.46795 * 60.00527 * 4 3 2 33 33 H 1.08994 * 109.47402 * 299.99981 * 4 3 2 34 34 H 1.08001 * 119.93683 * 359.97438 * 6 5 4 35 35 H 1.08003 * 120.06869 * 180.02562 * 7 6 5 36 36 H 1.08001 * 119.85499 * 359.97438 * 10 9 8 37 37 H 1.07997 * 120.01418 * 180.27964 * 12 11 10 38 38 H 0.96996 * 119.99689 * 354.93295 * 17 16 14 39 39 H 1.08003 * 120.06736 * 179.72331 * 23 8 7 40 40 H 1.08002 * 119.93450 * 180.29680 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0724 2.8633 0.0000 6 6 4.3016 3.5136 1.1992 7 6 4.7622 4.8144 1.2048 8 6 4.9968 5.4730 -0.0011 9 6 5.4912 6.8712 -0.0018 10 6 5.8224 7.4969 1.2064 11 7 6.2631 8.7431 1.2130 12 6 6.4000 9.4061 0.0812 13 6 6.0653 8.7897 -1.1400 14 6 6.2054 9.4985 -2.3546 15 1 6.8106 10.3923 -2.3916 16 6 5.5596 9.0418 -3.5103 17 7 5.8328 9.5827 -4.6688 18 14 4.3079 7.6599 -3.3967 19 1 4.9951 6.3543 -3.5648 20 1 3.6432 7.7021 -2.0694 21 1 3.2901 7.8248 -4.4654 22 7 5.6190 7.5279 -1.1456 23 6 4.7591 4.8145 -1.2065 24 6 4.3045 3.5115 -1.1999 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9337 0.9285 -0.8892 33 1 3.9330 0.9288 0.8908 34 1 4.1199 3.0022 2.1329 35 1 4.9412 5.3211 2.1416 36 1 5.7164 6.9592 2.1371 37 1 6.7647 10.4226 0.0913 38 1 6.4266 10.3480 -4.7187 39 1 4.9349 5.3213 -2.1439 40 1 4.1245 2.9987 -2.1332 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241052662.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:39 Heat of formation + Delta-G solvation = 21.965447 kcal Electronic energy + Delta-G solvation = -20819.385837 eV Core-core repulsion = 17789.980040 eV Total energy + Delta-G solvation = -3029.405797 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.77800 -38.72456 -35.90531 -34.27834 -33.27124 -32.21719 -30.72615 -30.47743 -28.05578 -25.99090 -24.58871 -23.05324 -22.32266 -21.45438 -21.16814 -20.21289 -18.57180 -16.70466 -16.16821 -15.73576 -15.56807 -15.01479 -14.46962 -14.30223 -14.21147 -13.81229 -13.44448 -13.14310 -13.07898 -12.85084 -12.73702 -12.52776 -12.19762 -11.74799 -11.46556 -11.38359 -11.29116 -11.18274 -10.98340 -10.76665 -10.64853 -10.46089 -10.09677 -9.79251 -9.41635 -9.23619 -8.72668 -8.64547 -7.88260 -7.61844 -7.30892 -4.98062 1.16522 1.71556 2.39280 2.63179 3.34045 3.46128 3.76371 4.05339 4.14884 4.51841 4.63677 4.74558 4.88518 4.93172 5.03525 5.12586 5.25080 5.32614 5.38260 5.54209 5.54747 5.55802 5.61305 5.67089 5.76452 5.79988 5.85263 5.95818 6.01025 6.08333 6.14555 6.18473 6.24458 6.40255 6.52606 6.67021 6.77339 6.85444 7.03975 7.21121 7.25645 7.29409 7.83126 7.98713 8.36291 8.77151 9.25043 9.80058 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.020117 B = 0.004374 C = 0.003745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.513559 B = 6399.497492 C = 7473.849360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.116 4.116 4 C -0.078 4.078 5 C -0.086 4.086 6 C -0.124 4.124 7 C -0.100 4.100 8 C -0.031 4.031 9 C 0.160 3.840 10 C -0.099 4.099 11 N -0.422 5.422 12 C -0.042 4.042 13 C 0.203 3.797 14 C -0.460 4.460 15 H 0.090 0.910 16 C 0.047 3.953 17 N -0.794 5.794 18 Si 1.129 2.871 19 H -0.276 1.276 20 H -0.274 1.274 21 H -0.319 1.319 22 N -0.527 5.527 23 C -0.096 4.096 24 C -0.124 4.124 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.119 0.881 35 H 0.126 0.874 36 H 0.137 0.863 37 H 0.141 0.859 38 H 0.288 0.712 39 H 0.140 0.860 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.628 -15.377 6.417 17.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.153 4.153 4 C -0.115 4.115 5 C -0.087 4.087 6 C -0.142 4.142 7 C -0.119 4.119 8 C -0.032 4.032 9 C 0.017 3.983 10 C -0.256 4.256 11 N -0.133 5.133 12 C -0.212 4.212 13 C 0.078 3.922 14 C -0.492 4.492 15 H 0.108 0.892 16 C -0.176 4.176 17 N -0.416 5.416 18 Si 0.962 3.038 19 H -0.204 1.204 20 H -0.201 1.201 21 H -0.250 1.250 22 N -0.249 5.249 23 C -0.115 4.115 24 C -0.142 4.142 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.137 0.863 35 H 0.144 0.856 36 H 0.154 0.846 37 H 0.158 0.842 38 H 0.099 0.901 39 H 0.157 0.843 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.510 -16.213 5.472 18.687 hybrid contribution 1.289 1.297 0.845 2.014 sum -6.221 -14.916 6.317 17.352 Atomic orbital electron populations 1.21780 0.95984 1.01380 1.01945 1.21551 0.95804 0.96987 1.01880 1.21625 0.94546 0.96497 1.02654 1.20589 0.95479 0.92856 1.02572 1.19887 0.99510 0.95999 0.93278 1.20826 1.01357 0.94718 0.97263 1.21210 0.98724 0.94505 0.97434 1.18685 0.99248 0.91956 0.93357 1.20326 0.94514 0.92534 0.90957 1.22517 1.12717 0.93681 0.96684 1.67717 1.07791 1.07276 1.30516 1.23230 1.09240 1.00315 0.88457 1.19391 0.89694 0.88498 0.94642 1.20721 1.25610 1.09650 0.93242 0.89220 1.27669 0.98156 1.01358 0.90430 1.70583 1.27480 1.17348 1.26153 0.82558 0.73827 0.73407 0.74039 1.20358 1.20077 1.25016 1.67768 1.21802 1.08637 1.26704 1.21826 0.96299 0.94141 0.99222 1.20976 1.00955 0.94849 0.97394 0.92957 0.92766 0.92686 0.92073 0.92137 0.91799 0.91695 0.91200 0.91259 0.86259 0.85571 0.84570 0.84204 0.90088 0.84267 0.86206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.91 37.16 0.37 -0.76 16 2 C -0.12 -0.96 5.93 -26.73 -0.16 -1.12 16 3 C -0.12 -1.08 5.20 -26.73 -0.14 -1.21 16 4 C -0.08 -0.77 5.34 -27.88 -0.15 -0.92 16 5 C -0.09 -1.14 5.14 -104.55 -0.54 -1.68 16 6 C -0.12 -1.66 9.68 -39.64 -0.38 -2.05 16 7 C -0.10 -1.58 9.42 -39.24 -0.37 -1.95 16 8 C -0.03 -0.60 5.87 -104.90 -0.62 -1.22 16 9 C 0.16 3.66 6.73 -82.76 -0.56 3.10 16 10 C -0.10 -2.18 10.61 -16.73 -0.18 -2.36 16 11 N -0.42 -9.94 10.47 -12.05 -0.13 -10.07 16 12 C -0.04 -1.00 10.98 -16.55 -0.18 -1.19 16 13 C 0.20 5.24 6.15 -84.84 -0.52 4.72 16 14 C -0.46 -12.02 9.57 -37.73 -0.36 -12.38 16 15 H 0.09 2.30 8.06 -52.49 -0.42 1.87 16 16 C 0.05 1.23 5.52 -17.34 -0.10 1.13 16 17 N -0.79 -20.78 13.65 55.55 0.76 -20.02 16 18 Si 1.13 26.83 24.53 -169.99 -4.17 22.66 16 19 H -0.28 -6.25 5.54 56.52 0.31 -5.94 16 20 H -0.27 -6.71 6.39 56.52 0.36 -6.35 16 21 H -0.32 -7.41 7.11 56.52 0.40 -7.01 16 22 N -0.53 -13.28 4.53 -7.50 -0.03 -13.32 16 23 C -0.10 -1.82 9.50 -39.24 -0.37 -2.19 16 24 C -0.12 -1.88 9.68 -39.63 -0.38 -2.27 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.39 8.14 -51.92 -0.42 -0.03 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16 33 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 34 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 35 H 0.13 1.79 6.22 -52.48 -0.33 1.46 16 36 H 0.14 2.54 6.22 -52.49 -0.33 2.21 16 37 H 0.14 3.06 8.06 -52.49 -0.42 2.64 16 38 H 0.29 7.15 8.72 -40.82 -0.36 6.79 16 39 H 0.14 2.89 4.09 -52.48 -0.21 2.67 16 40 H 0.12 1.56 8.06 -52.49 -0.42 1.13 16 LS Contribution 328.11 15.07 4.94 4.94 Total: -1.00 -28.15 328.11 -8.90 -37.05 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -5.64 Total: 1.12 kcal Atomic # 6 Polarization: -17.73 SS G_CDS: -4.64 Total: -22.37 kcal Atomic # 7 Polarization: -44.00 SS G_CDS: 0.60 Total: -43.41 kcal Atomic # 14 Polarization: 26.83 SS G_CDS: -4.17 Total: 22.66 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.15 -8.90 -37.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241052662.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.018 kcal (2) G-P(sol) polarization free energy of solvation -28.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds