Wall clock time and date at job start Tue Mar 31 2020 05:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47393 * 2 1 4 4 C 1.52998 * 109.47393 * 180.02562 * 3 2 1 5 5 C 1.50704 * 109.47137 * 179.97438 * 4 3 2 6 6 C 1.38406 * 119.85228 * 89.99844 * 5 4 3 7 7 C 1.37915 * 120.15128 * 179.97438 * 6 5 4 8 8 C 1.39649 * 119.84886 * 0.02562 * 7 6 5 9 9 C 1.47933 * 120.15049 * 179.97438 * 8 7 6 10 10 C 1.40428 * 120.78788 * 359.71782 * 9 8 7 11 11 N 1.31595 * 119.09535 * 179.74001 * 10 9 8 12 12 C 1.33644 * 120.82380 * 0.56931 * 11 10 9 13 13 C 1.41091 * 119.13054 * 179.70133 * 12 11 10 14 14 H 1.08001 * 120.00251 * 173.58505 * 13 12 11 15 15 C 1.40146 * 119.99960 * 353.58455 * 13 12 11 16 16 N 1.30656 * 120.00009 * 6.32721 * 15 13 12 17 17 Si 1.86801 * 119.99767 * 186.32626 * 15 13 12 18 18 H 1.48499 * 109.47122 * 94.98795 * 17 15 13 19 19 H 1.48503 * 109.47093 * 214.98974 * 17 15 13 20 20 H 1.48493 * 109.47376 * 334.98698 * 17 15 13 21 21 N 1.33646 * 121.73819 * 359.68357 * 12 11 10 22 22 C 1.31587 * 120.82512 * 0.02562 * 21 12 11 23 23 C 1.39653 * 119.70600 * 0.25407 * 8 7 6 24 24 C 1.37926 * 119.84419 * 359.49132 * 23 8 7 25 25 H 1.09003 * 109.47346 * 300.00041 * 1 2 3 26 26 H 1.09000 * 109.46643 * 60.00317 * 1 2 3 27 27 H 1.09005 * 109.47305 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47261 * 239.99226 * 2 1 3 29 29 H 1.09005 * 109.47084 * 119.99836 * 2 1 3 30 30 H 1.08998 * 109.47549 * 59.99402 * 3 2 1 31 31 H 1.09005 * 109.46872 * 299.99966 * 3 2 1 32 32 H 1.08995 * 109.47500 * 59.99688 * 4 3 2 33 33 H 1.09000 * 109.46643 * 299.99683 * 4 3 2 34 34 H 1.08004 * 119.92076 * 359.97438 * 6 5 4 35 35 H 1.08006 * 120.07611 * 180.02562 * 7 6 5 36 36 H 1.08001 * 120.45377 * 0.02766 * 10 9 8 37 37 H 0.97002 * 119.99718 * 179.97438 * 16 15 13 38 38 H 1.08003 * 120.45208 * 180.02562 * 22 21 12 39 39 H 1.07997 * 120.08073 * 179.72234 * 23 8 7 40 40 H 1.08004 * 119.92103 * 180.24658 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0724 2.8633 -0.0013 6 6 4.3025 3.5132 1.1988 7 6 4.7627 4.8133 1.2055 8 6 4.9960 5.4741 -0.0024 9 6 5.4891 6.8689 -0.0031 10 6 5.7236 7.5490 1.2029 11 7 6.1672 8.7873 1.1634 12 6 6.3832 9.4004 -0.0042 13 6 6.8530 10.7308 -0.0048 14 1 7.1309 11.2050 -0.9345 15 6 6.9591 11.4370 1.2010 16 7 6.7422 10.8277 2.3362 17 14 7.4108 13.2495 1.1852 18 1 6.1727 14.0685 1.2247 19 1 8.2485 13.5613 2.3711 20 1 8.1702 13.5597 -0.0525 21 7 6.1662 8.7865 -1.1714 22 6 5.7281 7.5463 -1.2097 23 6 4.7562 4.8145 -1.2098 24 6 4.3010 3.5126 -1.2020 25 1 -0.3634 0.5138 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 3.9330 0.9287 -0.8908 33 1 3.9336 0.9285 0.8892 34 1 4.1212 3.0010 2.1323 35 1 4.9423 5.3191 2.1427 36 1 5.5468 7.0608 2.1499 37 1 6.8160 11.3164 3.1709 38 1 5.5552 7.0559 -2.1563 39 1 4.9303 5.3214 -2.1474 40 1 4.1189 2.9999 -2.1350 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241052772.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:06 Heat of formation + Delta-G solvation = 37.270547 kcal Electronic energy + Delta-G solvation = -20213.432336 eV Core-core repulsion = 17184.690218 eV Total energy + Delta-G solvation = -3028.742118 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.39702 -38.42907 -35.82135 -34.06710 -32.66587 -31.97564 -30.45899 -30.31680 -28.15321 -26.03239 -23.84339 -23.49300 -21.99001 -21.33451 -21.14839 -20.13737 -18.01368 -16.35596 -16.09186 -15.60952 -15.19654 -14.94566 -14.45672 -14.13355 -14.12234 -13.29711 -13.20972 -13.18528 -12.75898 -12.73882 -12.56366 -12.23152 -12.14197 -11.55905 -11.43233 -11.37027 -11.34978 -11.21052 -10.87572 -10.70368 -10.61182 -10.38403 -10.35475 -9.69553 -9.28204 -9.22106 -8.84041 -8.49128 -7.43550 -7.30352 -6.72293 -4.83146 1.50105 1.89212 2.67398 2.91252 2.96172 3.01391 3.05753 3.75103 4.24108 4.59670 4.74345 4.79925 4.98117 5.12200 5.22864 5.38131 5.39092 5.55159 5.61767 5.62408 5.67851 5.70470 5.72400 5.80931 5.82767 5.86681 5.97105 6.00112 6.04206 6.21252 6.23256 6.27029 6.39745 6.55342 6.73841 6.83436 6.91506 7.00194 7.05404 7.44038 7.45775 7.58795 7.99544 8.32358 8.40091 8.96880 9.93143 10.12294 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.044740 B = 0.002750 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.687553 B =10181.069291 C =10438.675644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.115 4.115 4 C -0.072 4.072 5 C -0.127 4.127 6 C -0.104 4.104 7 C -0.144 4.144 8 C 0.035 3.965 9 C -0.330 4.330 10 C 0.181 3.819 11 N -0.509 5.509 12 C 0.379 3.621 13 C -0.376 4.376 14 H 0.097 0.903 15 C 0.060 3.940 16 N -0.697 5.697 17 Si 0.923 3.077 18 H -0.266 1.266 19 H -0.273 1.273 20 H -0.257 1.257 21 N -0.593 5.593 22 C 0.187 3.813 23 C -0.145 4.145 24 C -0.104 4.104 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.111 0.889 35 H 0.118 0.882 36 H 0.131 0.869 37 H 0.279 0.721 38 H 0.132 0.868 39 H 0.117 0.883 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.563 -13.912 -1.066 15.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.152 4.152 4 C -0.109 4.109 5 C -0.127 4.127 6 C -0.122 4.122 7 C -0.162 4.162 8 C 0.033 3.967 9 C -0.339 4.339 10 C 0.004 3.996 11 N -0.224 5.224 12 C 0.146 3.854 13 C -0.409 4.409 14 H 0.115 0.885 15 C -0.169 4.169 16 N -0.317 5.317 17 Si 0.746 3.254 18 H -0.191 1.191 19 H -0.197 1.197 20 H -0.180 1.180 21 N -0.311 5.311 22 C 0.012 3.988 23 C -0.164 4.164 24 C -0.123 4.123 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.129 0.871 35 H 0.136 0.864 36 H 0.149 0.851 37 H 0.091 0.909 38 H 0.149 0.851 39 H 0.135 0.865 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -6.146 -12.721 -0.803 14.150 hybrid contribution -0.206 -0.250 0.107 0.341 sum -6.352 -12.971 -0.696 14.459 Atomic orbital electron populations 1.21780 0.96075 1.01304 1.01891 1.21560 0.95718 0.97213 1.01796 1.21622 0.94993 0.96167 1.02430 1.20485 0.95104 0.93297 1.02016 1.19645 1.03720 0.96098 0.93268 1.20791 0.99778 0.94757 0.96885 1.21138 1.02571 0.94792 0.97698 1.18707 0.93274 0.92268 0.92436 1.19772 1.21965 0.95655 0.96555 1.23070 0.89641 0.91255 0.95649 1.69352 1.16851 1.07682 1.28555 1.19973 0.89279 0.93850 0.82257 1.19515 1.32740 0.93968 0.94723 0.88496 1.26244 0.94166 1.01560 0.94913 1.70122 1.26047 1.36989 0.98509 0.86047 0.79483 0.80472 0.79414 1.19094 1.19749 1.18047 1.68659 1.21552 1.10107 1.30789 1.22694 0.89860 0.90380 0.95874 1.21116 1.02864 0.94807 0.97602 1.20780 0.99878 0.94733 0.96860 0.92766 0.92769 0.93017 0.92184 0.92176 0.91926 0.91948 0.91728 0.91715 0.87080 0.86424 0.85129 0.90925 0.85067 0.86549 0.87109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.91 37.16 0.37 -0.80 16 2 C -0.13 -1.03 5.93 -26.73 -0.16 -1.18 16 3 C -0.11 -1.13 5.20 -26.73 -0.14 -1.27 16 4 C -0.07 -0.77 5.34 -27.88 -0.15 -0.92 16 5 C -0.13 -1.76 5.14 -104.50 -0.54 -2.30 16 6 C -0.10 -1.53 9.68 -39.64 -0.38 -1.92 16 7 C -0.14 -2.45 9.45 -39.17 -0.37 -2.82 16 8 C 0.04 0.66 5.88 -104.87 -0.62 0.04 16 9 C -0.33 -7.31 5.94 -104.28 -0.62 -7.93 16 10 C 0.18 4.31 10.70 -16.83 -0.18 4.13 16 11 N -0.51 -13.85 7.86 -12.41 -0.10 -13.95 16 12 C 0.38 10.54 7.35 -158.17 -1.16 9.38 16 13 C -0.38 -10.03 9.35 -37.78 -0.35 -10.38 16 14 H 0.10 2.46 7.86 -52.49 -0.41 2.05 16 15 C 0.06 1.46 5.49 -17.34 -0.10 1.37 16 16 N -0.70 -17.70 11.43 55.56 0.64 -17.07 16 17 Si 0.92 17.78 29.56 -169.99 -5.03 12.75 16 18 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 19 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 20 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 21 N -0.59 -15.57 10.34 -12.41 -0.13 -15.70 16 22 C 0.19 4.29 10.70 -16.83 -0.18 4.11 16 23 C -0.15 -2.43 9.45 -39.17 -0.37 -2.80 16 24 C -0.10 -1.52 9.68 -39.64 -0.38 -1.90 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 33 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 34 H 0.11 1.39 8.06 -52.48 -0.42 0.96 16 35 H 0.12 1.92 6.29 -52.48 -0.33 1.59 16 36 H 0.13 2.74 6.33 -52.49 -0.33 2.40 16 37 H 0.28 6.32 8.29 -40.82 -0.34 5.98 16 38 H 0.13 2.55 6.33 -52.48 -0.33 2.22 16 39 H 0.12 1.82 6.29 -52.49 -0.33 1.49 16 40 H 0.11 1.35 8.06 -52.48 -0.42 0.93 16 LS Contribution 336.37 15.07 5.07 5.07 Total: -1.00 -28.98 336.37 -10.39 -39.37 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -5.52 Total: 4.71 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: -5.33 Total: -15.18 kcal Atomic # 7 Polarization: -47.12 SS G_CDS: 0.41 Total: -46.71 kcal Atomic # 14 Polarization: 17.78 SS G_CDS: -5.03 Total: 12.75 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.98 -10.39 -39.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241052772.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.642 kcal (2) G-P(sol) polarization free energy of solvation -28.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds