Wall clock time and date at job start Tue Mar 31 2020 05:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47393 * 2 1 4 4 C 1.52998 * 109.47393 * 180.02562 * 3 2 1 5 5 C 1.50704 * 109.47137 * 179.97438 * 4 3 2 6 6 C 1.38406 * 119.85228 * 89.99844 * 5 4 3 7 7 C 1.37915 * 120.15128 * 179.97438 * 6 5 4 8 8 C 1.39649 * 119.84886 * 0.02562 * 7 6 5 9 9 C 1.47933 * 120.15049 * 179.97438 * 8 7 6 10 10 C 1.40428 * 120.78788 * 359.71782 * 9 8 7 11 11 N 1.31595 * 119.09535 * 179.74001 * 10 9 8 12 12 C 1.33644 * 120.82380 * 0.56931 * 11 10 9 13 13 C 1.41091 * 119.13054 * 179.70133 * 12 11 10 14 14 H 1.08001 * 120.00251 * 173.58505 * 13 12 11 15 15 C 1.40146 * 119.99960 * 353.58455 * 13 12 11 16 16 N 1.30656 * 120.00009 * 6.32721 * 15 13 12 17 17 Si 1.86801 * 119.99767 * 186.32626 * 15 13 12 18 18 H 1.48499 * 109.47122 * 94.98795 * 17 15 13 19 19 H 1.48503 * 109.47093 * 214.98974 * 17 15 13 20 20 H 1.48493 * 109.47376 * 334.98698 * 17 15 13 21 21 N 1.33646 * 121.73819 * 359.68357 * 12 11 10 22 22 C 1.31587 * 120.82512 * 0.02562 * 21 12 11 23 23 C 1.39653 * 119.70600 * 0.25407 * 8 7 6 24 24 C 1.37926 * 119.84419 * 359.49132 * 23 8 7 25 25 H 1.09003 * 109.47346 * 300.00041 * 1 2 3 26 26 H 1.09000 * 109.46643 * 60.00317 * 1 2 3 27 27 H 1.09005 * 109.47305 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47261 * 239.99226 * 2 1 3 29 29 H 1.09005 * 109.47084 * 119.99836 * 2 1 3 30 30 H 1.08998 * 109.47549 * 59.99402 * 3 2 1 31 31 H 1.09005 * 109.46872 * 299.99966 * 3 2 1 32 32 H 1.08995 * 109.47500 * 59.99688 * 4 3 2 33 33 H 1.09000 * 109.46643 * 299.99683 * 4 3 2 34 34 H 1.08004 * 119.92076 * 359.97438 * 6 5 4 35 35 H 1.08006 * 120.07611 * 180.02562 * 7 6 5 36 36 H 1.08001 * 120.45377 * 0.02766 * 10 9 8 37 37 H 0.97002 * 119.99718 * 179.97438 * 16 15 13 38 38 H 1.08003 * 120.45208 * 180.02562 * 22 21 12 39 39 H 1.07997 * 120.08073 * 179.72234 * 23 8 7 40 40 H 1.08004 * 119.92103 * 180.24658 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0724 2.8633 -0.0013 6 6 4.3025 3.5132 1.1988 7 6 4.7627 4.8133 1.2055 8 6 4.9960 5.4741 -0.0024 9 6 5.4891 6.8689 -0.0031 10 6 5.7236 7.5490 1.2029 11 7 6.1672 8.7873 1.1634 12 6 6.3832 9.4004 -0.0042 13 6 6.8530 10.7308 -0.0048 14 1 7.1309 11.2050 -0.9345 15 6 6.9591 11.4370 1.2010 16 7 6.7422 10.8277 2.3362 17 14 7.4108 13.2495 1.1852 18 1 6.1727 14.0685 1.2247 19 1 8.2485 13.5613 2.3711 20 1 8.1702 13.5597 -0.0525 21 7 6.1662 8.7865 -1.1714 22 6 5.7281 7.5463 -1.2097 23 6 4.7562 4.8145 -1.2098 24 6 4.3010 3.5126 -1.2020 25 1 -0.3634 0.5138 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 3.9330 0.9287 -0.8908 33 1 3.9336 0.9285 0.8892 34 1 4.1212 3.0010 2.1323 35 1 4.9423 5.3191 2.1427 36 1 5.5468 7.0608 2.1499 37 1 6.8160 11.3164 3.1709 38 1 5.5552 7.0559 -2.1563 39 1 4.9303 5.3214 -2.1474 40 1 4.1189 2.9999 -2.1350 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241052772.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:05 Heat of formation + Delta-G solvation = 23.880056 kcal Electronic energy + Delta-G solvation = -20214.012991 eV Core-core repulsion = 17184.690218 eV Total energy + Delta-G solvation = -3029.322773 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.06425 -39.86231 -36.74182 -35.78327 -34.04717 -33.77437 -31.75176 -31.68741 -29.54822 -27.52427 -25.20513 -24.99823 -23.45510 -22.77990 -21.95211 -21.41482 -19.84897 -18.04066 -17.59416 -16.98390 -16.43048 -16.31238 -15.86933 -15.33607 -15.09134 -14.83743 -14.60185 -14.48621 -14.34286 -13.77818 -13.65390 -13.61552 -13.30187 -13.12739 -12.99853 -12.72172 -12.47855 -12.13713 -12.01461 -11.95183 -11.67286 -11.56079 -11.37976 -11.32509 -11.21037 -11.00754 -10.42514 -9.73838 -9.33860 -8.87335 -8.53457 -6.74349 0.00353 0.63573 0.98363 1.12900 1.38184 1.53205 1.55284 2.16293 2.63942 3.08630 3.84002 3.85750 3.90091 3.91269 4.04476 4.17381 4.18675 4.21997 4.31606 4.34392 4.44577 4.48104 4.69162 4.73454 4.86092 4.89670 4.91658 5.02629 5.03198 5.05714 5.19372 5.25656 5.27951 5.35365 5.35845 5.45498 5.55621 5.55878 5.79882 5.84480 5.94403 6.07412 6.25709 6.43096 6.51798 7.09370 8.12143 8.26642 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.044740 B = 0.002750 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.687553 B =10181.069291 C =10438.675644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.122 4.122 3 C -0.112 4.112 4 C -0.070 4.070 5 C -0.110 4.110 6 C -0.109 4.109 7 C -0.147 4.147 8 C -0.005 4.005 9 C -0.312 4.312 10 C 0.159 3.841 11 N -0.539 5.539 12 C 0.350 3.650 13 C -0.419 4.419 14 H 0.094 0.906 15 C 0.019 3.981 16 N -0.737 5.737 17 Si 1.004 2.996 18 H -0.260 1.260 19 H -0.259 1.259 20 H -0.254 1.254 21 N -0.618 5.618 22 C 0.170 3.830 23 C -0.145 4.145 24 C -0.108 4.108 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.137 0.863 35 H 0.117 0.883 36 H 0.151 0.849 37 H 0.288 0.712 38 H 0.164 0.836 39 H 0.124 0.876 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.444 -16.282 -1.311 17.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.160 4.160 3 C -0.149 4.149 4 C -0.107 4.107 5 C -0.110 4.110 6 C -0.127 4.127 7 C -0.166 4.166 8 C -0.006 4.006 9 C -0.321 4.321 10 C -0.016 4.016 11 N -0.256 5.256 12 C 0.116 3.884 13 C -0.453 4.453 14 H 0.112 0.888 15 C -0.205 4.205 16 N -0.358 5.358 17 Si 0.822 3.178 18 H -0.184 1.184 19 H -0.184 1.184 20 H -0.177 1.177 21 N -0.337 5.337 22 C -0.003 4.003 23 C -0.163 4.163 24 C -0.126 4.126 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.155 0.845 35 H 0.135 0.865 36 H 0.169 0.831 37 H 0.099 0.901 38 H 0.181 0.819 39 H 0.141 0.859 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -7.052 -15.173 -1.054 16.765 hybrid contribution -0.083 0.057 0.141 0.174 sum -7.135 -15.116 -0.913 16.740 Atomic orbital electron populations 1.21793 0.95859 1.01910 1.01660 1.21531 0.95905 0.96026 1.02491 1.21577 0.94246 0.97290 1.01808 1.20566 0.95571 0.91111 1.03485 1.20130 1.00757 0.97461 0.92626 1.21101 0.99122 0.93871 0.98613 1.21278 1.02345 0.95858 0.97093 1.18670 0.96572 0.91088 0.94285 1.20076 1.19300 0.97151 0.95560 1.23513 0.89834 0.90870 0.97375 1.69310 1.18341 1.09155 1.28777 1.20391 0.90307 0.94809 0.82919 1.19792 1.35216 0.94477 0.95783 0.88807 1.27204 0.93318 1.06273 0.93739 1.70177 1.27087 1.39192 0.99316 0.84875 0.79352 0.73802 0.79757 1.18441 1.18351 1.17715 1.68667 1.22872 1.11652 1.30531 1.23262 0.89525 0.89808 0.97675 1.21298 1.02214 0.95774 0.97041 1.21125 0.99024 0.93891 0.98550 0.93074 0.92981 0.92041 0.91431 0.91542 0.92688 0.92527 0.90217 0.90405 0.84500 0.86507 0.83149 0.90053 0.81876 0.85858 0.84183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.91 71.98 0.71 -1.24 16 2 C -0.12 -1.58 5.93 30.59 0.18 -1.39 16 3 C -0.11 -1.82 5.20 30.59 0.16 -1.66 16 4 C -0.07 -1.20 5.34 29.85 0.16 -1.04 16 5 C -0.11 -2.64 5.14 -19.78 -0.10 -2.74 16 6 C -0.11 -2.91 9.68 22.23 0.22 -2.69 16 7 C -0.15 -4.85 9.45 22.53 0.21 -4.63 16 8 C 0.00 -0.17 5.88 -20.03 -0.12 -0.29 16 9 C -0.31 -14.07 5.94 -19.64 -0.12 -14.19 16 10 C 0.16 7.84 10.70 85.26 0.91 8.76 16 11 N -0.54 -30.79 7.86 -193.17 -1.52 -32.31 16 12 C 0.35 20.49 7.35 134.91 0.99 21.48 16 13 C -0.42 -23.47 9.35 23.43 0.22 -23.25 16 14 H 0.09 5.05 7.86 -2.91 -0.02 5.03 16 15 C 0.02 0.97 5.49 85.33 0.47 1.44 16 16 N -0.74 -38.89 11.43 21.86 0.25 -38.64 16 17 Si 1.00 37.23 29.56 68.60 2.03 39.25 16 18 H -0.26 -9.28 7.11 99.48 0.71 -8.57 16 19 H -0.26 -8.95 7.11 99.48 0.71 -8.24 16 20 H -0.25 -9.14 7.11 99.48 0.71 -8.43 16 21 N -0.62 -33.82 10.34 -193.17 -2.00 -35.82 16 22 C 0.17 7.98 10.70 85.26 0.91 8.89 16 23 C -0.14 -4.58 9.45 22.54 0.21 -4.36 16 24 C -0.11 -2.78 9.68 22.23 0.22 -2.57 16 25 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 28 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 32 H 0.08 1.19 8.08 -2.39 -0.02 1.17 16 33 H 0.08 1.19 8.08 -2.39 -0.02 1.17 16 34 H 0.14 2.93 8.06 -2.91 -0.02 2.90 16 35 H 0.12 3.76 6.29 -2.91 -0.02 3.74 16 36 H 0.15 6.52 6.33 -2.91 -0.02 6.50 16 37 H 0.29 13.44 8.29 -92.71 -0.77 12.67 16 38 H 0.16 6.31 6.33 -2.91 -0.02 6.29 16 39 H 0.12 3.63 6.29 -2.91 -0.02 3.61 16 40 H 0.14 2.80 8.06 -2.91 -0.02 2.78 16 Total: -1.00 -66.01 336.37 5.03 -60.97 By element: Atomic # 1 Polarization: 25.00 SS G_CDS: 1.03 Total: 26.04 kcal Atomic # 6 Polarization: -24.74 SS G_CDS: 5.24 Total: -19.50 kcal Atomic # 7 Polarization: -103.50 SS G_CDS: -3.26 Total: -106.77 kcal Atomic # 14 Polarization: 37.23 SS G_CDS: 2.03 Total: 39.25 kcal Total: -66.01 5.03 -60.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241052772.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.852 kcal (2) G-P(sol) polarization free energy of solvation -66.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds