Wall clock time and date at job start Tue Mar 31 2020 05:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47177 * 2 1 4 4 C 1.52996 * 109.47347 * 239.99830 * 2 1 3 5 5 C 1.50706 * 109.47243 * 119.99853 * 2 1 3 6 6 C 1.38427 * 119.91744 * 0.02562 * 5 2 1 7 7 C 1.38381 * 120.30492 * 180.29694 * 6 5 2 8 8 C 1.37941 * 120.15337 * 359.44843 * 7 6 5 9 9 C 1.39671 * 119.84041 * 0.54408 * 8 7 6 10 10 C 1.47798 * 120.14706 * 179.70505 * 9 8 7 11 11 N 1.32861 * 120.24688 * 224.38133 * 10 9 8 12 12 C 1.32004 * 120.08128 * 179.97438 * 11 10 9 13 13 C 1.39200 * 120.58744 * 0.02562 * 12 11 10 14 14 N 1.31605 * 120.50181 * 359.95544 * 13 12 11 15 15 C 1.33978 * 119.90058 * 359.77926 * 14 13 12 16 16 C 1.40797 * 120.28804 * 180.25385 * 15 14 13 17 17 H 1.07999 * 119.99758 * 190.55006 * 16 15 14 18 18 C 1.40176 * 119.99959 * 10.54985 * 16 15 14 19 19 N 1.30681 * 120.00019 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99834 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.46992 * 90.00001 * 20 18 16 22 22 H 1.48501 * 109.47237 * 210.00139 * 20 18 16 23 23 H 1.48502 * 109.47105 * 330.00100 * 20 18 16 24 24 C 1.37885 * 119.92314 * 180.02562 * 5 2 1 25 25 H 1.09002 * 109.47034 * 300.00175 * 1 2 3 26 26 H 1.08998 * 109.47332 * 60.00236 * 1 2 3 27 27 H 1.08998 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46792 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.46797 * 300.00091 * 3 2 1 30 30 H 1.08993 * 109.47033 * 59.99989 * 3 2 1 31 31 H 1.09000 * 109.47288 * 300.00486 * 4 2 1 32 32 H 1.09007 * 109.47051 * 59.99990 * 4 2 1 33 33 H 1.08997 * 109.47703 * 180.02562 * 4 2 1 34 34 H 1.08001 * 119.85050 * 0.02562 * 6 5 2 35 35 H 1.08002 * 119.92523 * 179.72606 * 7 6 5 36 36 H 1.08005 * 120.07770 * 180.25649 * 8 7 6 37 37 H 1.08000 * 119.70961 * 179.97438 * 12 11 10 38 38 H 1.07995 * 119.74846 * 179.97438 * 13 12 11 39 39 H 0.96997 * 119.99930 * 180.02562 * 19 18 16 40 40 H 1.08000 * 120.08349 * 359.97438 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0324 -0.7104 1.2305 6 6 1.1313 -1.2363 2.1404 7 6 1.5838 -1.8848 3.2760 8 6 2.9375 -2.0213 3.5030 9 6 3.8522 -1.4932 2.5891 10 6 5.3042 -1.6298 2.8289 11 7 6.1141 -0.5936 2.6406 12 6 7.4103 -0.7192 2.8563 13 6 7.9434 -1.9329 3.2812 14 7 7.1622 -2.9741 3.4753 15 6 5.8430 -2.8673 3.2676 16 6 4.9991 -3.9745 3.4779 17 1 3.9706 -3.9395 3.1501 18 6 5.4938 -5.1223 4.1127 19 7 6.7381 -5.1644 4.5097 20 14 4.3744 -6.5915 4.3910 21 1 4.4563 -7.5046 3.2228 22 1 4.8020 -7.3147 5.6155 23 1 2.9748 -6.1232 4.5561 24 6 3.3883 -0.8350 1.4474 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6766 -1.7489 -1.2492 32 1 1.6767 -0.2074 -2.1392 33 1 3.1300 -0.7217 -1.2490 34 1 0.0703 -1.1362 1.9653 35 1 0.8753 -2.2889 3.9840 36 1 3.2893 -2.5313 4.3877 37 1 8.0632 0.1269 2.7009 38 1 9.0059 -2.0206 3.4531 39 1 7.0806 -5.9587 4.9486 40 1 4.0902 -0.4246 0.7365 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241297258.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:44 Heat of formation + Delta-G solvation = 46.381097 kcal Electronic energy + Delta-G solvation = -21700.275348 eV Core-core repulsion = 18671.928294 eV Total energy + Delta-G solvation = -3028.347055 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.56010 -38.64851 -35.93162 -34.17628 -32.38757 -31.26274 -29.80740 -28.63569 -27.15379 -27.06878 -26.13341 -23.20321 -22.50834 -21.73743 -20.62493 -18.61414 -17.70382 -16.45484 -16.05594 -15.11126 -14.89073 -14.46339 -14.30303 -14.13993 -14.07773 -13.48293 -13.12280 -12.83627 -12.74945 -12.38004 -12.11894 -11.84162 -11.67672 -11.57515 -11.52818 -11.42750 -11.27031 -11.05148 -10.81261 -10.65833 -10.39196 -10.14275 -10.07660 -9.82368 -9.59411 -9.22819 -8.38601 -8.02025 -7.60081 -7.37240 -6.63342 -4.74468 1.81672 2.09870 2.55118 2.95125 2.97312 3.00821 3.15372 3.77039 4.44592 4.57544 4.86063 4.98608 5.18117 5.42385 5.52450 5.58633 5.67600 5.71921 5.75005 5.76001 5.89616 5.96612 5.98768 6.03885 6.04378 6.15446 6.16321 6.19647 6.35960 6.39916 6.47976 6.50348 6.63295 6.74664 6.81756 6.90885 7.03070 7.19572 7.24216 7.48492 7.61351 7.72189 7.98698 8.31143 8.57315 9.16922 9.75015 10.01147 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.016494 B = 0.005943 C = 0.004741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.194001 B = 4710.315581 C = 5904.019896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.026 4.026 3 C -0.137 4.137 4 C -0.138 4.138 5 C -0.082 4.082 6 C -0.141 4.141 7 C -0.127 4.127 8 C -0.106 4.106 9 C 0.029 3.971 10 C -0.029 4.029 11 N -0.412 5.412 12 C -0.118 4.118 13 C 0.087 3.913 14 N -0.454 5.454 15 C 0.222 3.778 16 C -0.405 4.405 17 H 0.101 0.899 18 C 0.066 3.934 19 N -0.707 5.707 20 Si 0.909 3.091 21 H -0.265 1.265 22 H -0.273 1.273 23 H -0.255 1.255 24 C -0.101 4.101 25 H 0.057 0.943 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.115 0.885 35 H 0.113 0.887 36 H 0.130 0.870 37 H 0.128 0.872 38 H 0.130 0.870 39 H 0.279 0.721 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.925 4.207 -4.778 10.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.026 4.026 3 C -0.194 4.194 4 C -0.195 4.195 5 C -0.082 4.082 6 C -0.160 4.160 7 C -0.145 4.145 8 C -0.125 4.125 9 C 0.027 3.973 10 C -0.176 4.176 11 N -0.124 5.124 12 C -0.280 4.280 13 C -0.084 4.084 14 N -0.171 5.171 15 C 0.097 3.903 16 C -0.435 4.435 17 H 0.119 0.881 18 C -0.162 4.162 19 N -0.327 5.327 20 Si 0.732 3.268 21 H -0.190 1.190 22 H -0.198 1.198 23 H -0.179 1.179 24 C -0.121 4.121 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.133 0.867 35 H 0.131 0.869 36 H 0.148 0.852 37 H 0.145 0.855 38 H 0.147 0.853 39 H 0.091 0.909 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -8.726 4.034 -4.650 10.679 hybrid contribution -0.088 -0.664 0.222 0.706 sum -8.814 3.370 -4.429 10.424 Atomic orbital electron populations 1.21928 0.94716 1.01707 1.01346 1.19422 0.95110 0.94937 0.93119 1.21876 1.01588 0.94786 1.01185 1.21880 1.01487 1.00140 0.95978 1.19547 0.93261 0.99567 0.95782 1.20987 0.98761 1.00976 0.95242 1.20942 0.95405 1.00433 0.97683 1.21434 0.92210 0.99202 0.99671 1.18322 0.90893 0.94936 0.93145 1.20190 0.92081 0.91992 1.13344 1.67695 1.04328 1.30892 1.09496 1.22556 0.92093 0.98685 1.14628 1.23527 0.99824 0.90820 0.94257 1.69517 1.03545 1.27142 1.16860 1.19233 0.89791 0.91728 0.89535 1.19898 0.98303 0.96117 1.29176 0.88094 1.26222 0.95428 1.00144 0.94396 1.70031 1.13725 1.27488 1.21424 0.86265 0.81252 0.80388 0.78882 1.19002 1.19815 1.17888 1.20998 0.94148 0.99626 0.97283 0.92434 0.92948 0.92403 0.92185 0.92957 0.92662 0.92590 0.92912 0.92315 0.86747 0.86889 0.85176 0.85478 0.85250 0.90931 0.86765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 7.13 37.16 0.26 -1.29 16 2 C -0.03 -0.34 0.85 -155.66 -0.13 -0.48 16 3 C -0.14 -1.74 8.28 37.16 0.31 -1.43 16 4 C -0.14 -1.76 8.29 37.16 0.31 -1.45 16 5 C -0.08 -1.35 4.76 -104.68 -0.50 -1.85 16 6 C -0.14 -2.25 8.98 -39.46 -0.35 -2.61 16 7 C -0.13 -2.17 10.03 -39.64 -0.40 -2.57 16 8 C -0.11 -2.16 7.54 -39.16 -0.30 -2.45 16 9 C 0.03 0.63 5.28 -104.90 -0.55 0.08 16 10 C -0.03 -0.74 6.41 -82.11 -0.53 -1.26 16 11 N -0.41 -10.20 10.31 -8.97 -0.09 -10.29 16 12 C -0.12 -2.73 11.22 -17.12 -0.19 -2.92 16 13 C 0.09 2.06 11.22 -17.29 -0.19 1.86 16 14 N -0.45 -12.24 8.12 -10.73 -0.09 -12.33 16 15 C 0.22 5.93 6.51 -84.56 -0.55 5.38 16 16 C -0.40 -10.26 7.45 -37.89 -0.28 -10.54 16 17 H 0.10 2.42 5.37 -52.49 -0.28 2.14 16 18 C 0.07 1.58 5.49 -17.31 -0.10 1.48 16 19 N -0.71 -17.87 11.55 55.56 0.64 -17.23 16 20 Si 0.91 17.64 29.56 -169.99 -5.02 12.62 16 21 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 22 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 23 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 24 C -0.10 -1.99 8.34 -39.16 -0.33 -2.32 16 25 H 0.06 0.62 7.51 -51.93 -0.39 0.23 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.63 7.51 -51.93 -0.39 0.24 16 28 H 0.06 0.83 7.38 -51.93 -0.38 0.44 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.81 7.38 -51.93 -0.38 0.43 16 34 H 0.11 1.52 5.87 -52.49 -0.31 1.21 16 35 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 36 H 0.13 2.75 6.73 -52.48 -0.35 2.39 16 37 H 0.13 2.50 8.06 -52.49 -0.42 2.08 16 38 H 0.13 2.62 8.06 -52.49 -0.42 2.19 16 39 H 0.28 6.35 8.29 -40.82 -0.34 6.02 16 40 H 0.11 2.28 7.09 -52.49 -0.37 1.90 16 LS Contribution 326.66 15.07 4.92 4.92 Total: -1.00 -28.61 326.66 -8.54 -37.15 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -5.38 Total: 7.52 kcal Atomic # 6 Polarization: -18.85 SS G_CDS: -3.52 Total: -22.37 kcal Atomic # 7 Polarization: -40.31 SS G_CDS: 0.46 Total: -39.84 kcal Atomic # 14 Polarization: 17.64 SS G_CDS: -5.02 Total: 12.62 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.61 -8.54 -37.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241297258.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.532 kcal (2) G-P(sol) polarization free energy of solvation -28.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds