Wall clock time and date at job start Tue Mar 31 2020 05:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47177 * 2 1 4 4 C 1.52996 * 109.47347 * 239.99830 * 2 1 3 5 5 C 1.50706 * 109.47243 * 119.99853 * 2 1 3 6 6 C 1.38427 * 119.91744 * 0.02562 * 5 2 1 7 7 C 1.38381 * 120.30492 * 180.29694 * 6 5 2 8 8 C 1.37941 * 120.15337 * 359.44843 * 7 6 5 9 9 C 1.39671 * 119.84041 * 0.54408 * 8 7 6 10 10 C 1.47798 * 120.14706 * 179.70505 * 9 8 7 11 11 N 1.32861 * 120.24688 * 224.38133 * 10 9 8 12 12 C 1.32004 * 120.08128 * 179.97438 * 11 10 9 13 13 C 1.39200 * 120.58744 * 0.02562 * 12 11 10 14 14 N 1.31605 * 120.50181 * 359.95544 * 13 12 11 15 15 C 1.33978 * 119.90058 * 359.77926 * 14 13 12 16 16 C 1.40797 * 120.28804 * 180.25385 * 15 14 13 17 17 H 1.07999 * 119.99758 * 190.55006 * 16 15 14 18 18 C 1.40176 * 119.99959 * 10.54985 * 16 15 14 19 19 N 1.30681 * 120.00019 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99834 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.46992 * 90.00001 * 20 18 16 22 22 H 1.48501 * 109.47237 * 210.00139 * 20 18 16 23 23 H 1.48502 * 109.47105 * 330.00100 * 20 18 16 24 24 C 1.37885 * 119.92314 * 180.02562 * 5 2 1 25 25 H 1.09002 * 109.47034 * 300.00175 * 1 2 3 26 26 H 1.08998 * 109.47332 * 60.00236 * 1 2 3 27 27 H 1.08998 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46792 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.46797 * 300.00091 * 3 2 1 30 30 H 1.08993 * 109.47033 * 59.99989 * 3 2 1 31 31 H 1.09000 * 109.47288 * 300.00486 * 4 2 1 32 32 H 1.09007 * 109.47051 * 59.99990 * 4 2 1 33 33 H 1.08997 * 109.47703 * 180.02562 * 4 2 1 34 34 H 1.08001 * 119.85050 * 0.02562 * 6 5 2 35 35 H 1.08002 * 119.92523 * 179.72606 * 7 6 5 36 36 H 1.08005 * 120.07770 * 180.25649 * 8 7 6 37 37 H 1.08000 * 119.70961 * 179.97438 * 12 11 10 38 38 H 1.07995 * 119.74846 * 179.97438 * 13 12 11 39 39 H 0.96997 * 119.99930 * 180.02562 * 19 18 16 40 40 H 1.08000 * 120.08349 * 359.97438 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0324 -0.7104 1.2305 6 6 1.1313 -1.2363 2.1404 7 6 1.5838 -1.8848 3.2760 8 6 2.9375 -2.0213 3.5030 9 6 3.8522 -1.4932 2.5891 10 6 5.3042 -1.6298 2.8289 11 7 6.1141 -0.5936 2.6406 12 6 7.4103 -0.7192 2.8563 13 6 7.9434 -1.9329 3.2812 14 7 7.1622 -2.9741 3.4753 15 6 5.8430 -2.8673 3.2676 16 6 4.9991 -3.9745 3.4779 17 1 3.9706 -3.9395 3.1501 18 6 5.4938 -5.1223 4.1127 19 7 6.7381 -5.1644 4.5097 20 14 4.3744 -6.5915 4.3910 21 1 4.4563 -7.5046 3.2228 22 1 4.8020 -7.3147 5.6155 23 1 2.9748 -6.1232 4.5561 24 6 3.3883 -0.8350 1.4474 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6766 -1.7489 -1.2492 32 1 1.6767 -0.2074 -2.1392 33 1 3.1300 -0.7217 -1.2490 34 1 0.0703 -1.1362 1.9653 35 1 0.8753 -2.2889 3.9840 36 1 3.2893 -2.5313 4.3877 37 1 8.0632 0.1269 2.7009 38 1 9.0059 -2.0206 3.4531 39 1 7.0806 -5.9587 4.9486 40 1 4.0902 -0.4246 0.7365 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241297258.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:44 Heat of formation + Delta-G solvation = 31.705376 kcal Electronic energy + Delta-G solvation = -21700.911735 eV Core-core repulsion = 18671.928294 eV Total energy + Delta-G solvation = -3028.983442 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.16815 -40.20287 -37.19258 -36.01139 -34.16964 -32.99576 -31.25995 -30.15007 -28.32127 -28.07499 -27.84741 -24.90126 -24.08899 -23.35890 -22.14891 -19.90361 -19.54420 -17.96461 -17.73800 -16.89628 -16.45481 -15.90397 -15.81470 -15.56075 -15.08372 -14.93349 -14.59864 -14.42638 -14.23766 -13.68497 -13.55151 -13.31406 -13.08549 -12.97461 -12.86605 -12.55583 -12.49363 -12.42217 -12.15651 -11.98684 -11.80049 -11.69381 -11.52365 -11.37478 -11.28505 -11.05968 -10.07809 -9.46776 -9.43217 -9.08837 -8.45360 -6.63920 0.19810 0.65773 0.80191 1.22032 1.37045 1.49381 1.53440 2.15106 2.72042 3.01551 3.70485 3.72973 3.82258 3.97742 4.16117 4.19550 4.31195 4.34624 4.43288 4.48567 4.58457 4.70361 4.72909 4.80822 4.86259 4.94671 4.96426 5.04153 5.07619 5.08033 5.10912 5.18615 5.25227 5.33677 5.41272 5.46197 5.48067 5.70498 5.79311 5.87389 5.96093 6.12180 6.27460 6.46010 6.69493 7.29060 7.85906 8.24324 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.016494 B = 0.005943 C = 0.004741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.194001 B = 4710.315581 C = 5904.019896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.027 4.027 3 C -0.136 4.136 4 C -0.137 4.137 5 C -0.076 4.076 6 C -0.130 4.130 7 C -0.120 4.120 8 C -0.123 4.123 9 C -0.007 4.007 10 C -0.041 4.041 11 N -0.431 5.431 12 C -0.123 4.123 13 C 0.074 3.926 14 N -0.490 5.490 15 C 0.188 3.812 16 C -0.423 4.423 17 H 0.106 0.894 18 C 0.023 3.977 19 N -0.745 5.745 20 Si 0.984 3.016 21 H -0.262 1.262 22 H -0.263 1.263 23 H -0.245 1.245 24 C -0.111 4.111 25 H 0.063 0.937 26 H 0.072 0.928 27 H 0.062 0.938 28 H 0.038 0.962 29 H 0.077 0.923 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.077 0.923 33 H 0.037 0.963 34 H 0.154 0.846 35 H 0.145 0.855 36 H 0.112 0.888 37 H 0.161 0.839 38 H 0.160 0.840 39 H 0.287 0.713 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.035 4.273 -5.520 13.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.027 4.027 3 C -0.193 4.193 4 C -0.194 4.194 5 C -0.076 4.076 6 C -0.148 4.148 7 C -0.138 4.138 8 C -0.142 4.142 9 C -0.008 4.008 10 C -0.187 4.187 11 N -0.143 5.143 12 C -0.283 4.283 13 C -0.096 4.096 14 N -0.207 5.207 15 C 0.064 3.936 16 C -0.454 4.454 17 H 0.124 0.876 18 C -0.201 4.201 19 N -0.366 5.366 20 Si 0.803 3.197 21 H -0.186 1.186 22 H -0.188 1.188 23 H -0.168 1.168 24 C -0.131 4.131 25 H 0.082 0.918 26 H 0.091 0.909 27 H 0.081 0.919 28 H 0.057 0.943 29 H 0.096 0.904 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.056 0.944 34 H 0.171 0.829 35 H 0.163 0.837 36 H 0.130 0.870 37 H 0.178 0.822 38 H 0.177 0.823 39 H 0.098 0.902 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -11.820 4.131 -5.399 13.635 hybrid contribution 0.886 -0.559 0.398 1.121 sum -10.933 3.573 -5.001 12.542 Atomic orbital electron populations 1.21917 0.92193 1.02521 1.02789 1.19535 0.97058 0.94670 0.91462 1.21863 1.00299 0.94726 1.02385 1.21874 1.00211 1.00379 0.96924 1.19957 0.91944 0.98600 0.97103 1.21445 1.00547 0.98885 0.93895 1.21292 0.94299 0.99589 0.98613 1.21369 0.93642 1.00072 0.99140 1.18425 0.89746 0.97535 0.95097 1.20667 0.93850 0.91596 1.12628 1.67777 1.05109 1.31063 1.10356 1.23101 0.92152 0.99594 1.13484 1.24030 1.01061 0.90605 0.93891 1.69464 1.04177 1.28748 1.18274 1.19699 0.90268 0.93009 0.90643 1.20172 0.98559 0.96736 1.29892 0.87590 1.27166 0.96856 1.02656 0.93432 1.70108 1.15594 1.28729 1.22124 0.85160 0.79350 0.76223 0.79001 1.18629 1.18767 1.16841 1.20951 0.95640 0.99988 0.96480 0.91776 0.90881 0.91854 0.94292 0.90435 0.92763 0.92818 0.90370 0.94413 0.82873 0.83688 0.87005 0.82215 0.82280 0.90206 0.88240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 7.13 71.98 0.51 -1.92 16 2 C -0.03 -0.66 0.85 -52.93 -0.05 -0.70 16 3 C -0.14 -3.17 8.28 71.98 0.60 -2.57 16 4 C -0.14 -3.24 8.29 71.98 0.60 -2.64 16 5 C -0.08 -2.40 4.76 -19.90 -0.09 -2.50 16 6 C -0.13 -3.74 8.98 22.35 0.20 -3.54 16 7 C -0.12 -3.87 10.03 22.23 0.22 -3.65 16 8 C -0.12 -5.08 7.54 22.55 0.17 -4.91 16 9 C -0.01 -0.30 5.28 -20.05 -0.11 -0.41 16 10 C -0.04 -2.16 6.41 42.43 0.27 -1.88 16 11 N -0.43 -22.17 10.31 -182.29 -1.88 -24.05 16 12 C -0.12 -5.79 11.22 84.90 0.95 -4.84 16 13 C 0.07 3.61 11.22 84.96 0.95 4.56 16 14 N -0.49 -27.54 8.12 -187.85 -1.53 -29.07 16 15 C 0.19 10.58 6.51 40.35 0.26 10.84 16 16 C -0.42 -22.30 7.45 23.37 0.17 -22.13 16 17 H 0.11 5.28 5.37 -2.91 -0.02 5.26 16 18 C 0.02 1.12 5.49 85.33 0.47 1.59 16 19 N -0.74 -38.82 11.55 21.86 0.25 -38.56 16 20 Si 0.98 36.23 29.56 68.60 2.03 38.26 16 21 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 22 H -0.26 -9.18 7.11 99.48 0.71 -8.48 16 23 H -0.25 -8.54 7.11 99.48 0.71 -7.83 16 24 C -0.11 -4.48 8.34 22.54 0.19 -4.29 16 25 H 0.06 1.08 7.51 -2.39 -0.02 1.06 16 26 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.06 1.08 7.51 -2.39 -0.02 1.06 16 28 H 0.04 1.06 7.38 -2.39 -0.02 1.04 16 29 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.05 1.26 8.14 -2.39 -0.02 1.25 16 31 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 33 H 0.04 1.03 7.38 -2.39 -0.02 1.02 16 34 H 0.15 3.27 5.87 -2.91 -0.02 3.25 16 35 H 0.15 3.70 8.06 -2.91 -0.02 3.67 16 36 H 0.11 4.93 6.73 -2.91 -0.02 4.91 16 37 H 0.16 6.25 8.06 -2.91 -0.02 6.23 16 38 H 0.16 6.51 8.06 -2.91 -0.02 6.49 16 39 H 0.29 13.37 8.29 -92.71 -0.77 12.60 16 40 H 0.10 4.19 7.09 -2.91 -0.02 4.17 16 Total: -1.00 -65.58 326.66 5.24 -60.34 By element: Atomic # 1 Polarization: 31.03 SS G_CDS: 1.04 Total: 32.07 kcal Atomic # 6 Polarization: -44.32 SS G_CDS: 5.33 Total: -39.00 kcal Atomic # 7 Polarization: -88.52 SS G_CDS: -3.15 Total: -91.68 kcal Atomic # 14 Polarization: 36.23 SS G_CDS: 2.03 Total: 38.26 kcal Total: -65.58 5.24 -60.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241297258.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.048 kcal (2) G-P(sol) polarization free energy of solvation -65.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds