Wall clock time and date at job start Tue Mar 31 2020 05:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47446 * 2 1 4 4 C 1.53002 * 109.46779 * 240.00118 * 2 1 3 5 5 C 1.50708 * 109.47499 * 120.00431 * 2 1 3 6 6 C 1.38352 * 119.93569 * 239.97818 * 5 2 1 7 7 C 1.38311 * 120.25413 * 179.97438 * 6 5 2 8 8 C 1.38023 * 120.12550 * 359.75952 * 7 6 5 9 9 C 1.39378 * 119.86964 * 0.53845 * 8 7 6 10 10 C 1.48302 * 120.12271 * 179.71755 * 9 8 7 11 11 C 1.40037 * 119.97949 * 184.70049 * 10 9 8 12 12 N 1.32177 * 120.29104 * 180.02562 * 11 10 9 13 13 C 1.31883 * 120.28539 * 359.73285 * 12 11 10 14 14 C 1.40825 * 119.96276 * 0.52680 * 13 12 11 15 15 C 1.41339 * 120.14626 * 179.75500 * 14 13 12 16 16 H 1.08001 * 119.99495 * 6.06555 * 15 14 13 17 17 C 1.40043 * 119.99678 * 186.07487 * 15 14 13 18 18 N 1.30727 * 120.00354 * 353.75452 * 17 15 14 19 19 Si 1.86801 * 119.99737 * 173.76602 * 17 15 14 20 20 H 1.48497 * 109.47478 * 179.97438 * 19 17 15 21 21 H 1.48510 * 109.46855 * 299.99507 * 19 17 15 22 22 H 1.48504 * 109.47480 * 59.99148 * 19 17 15 23 23 N 1.32519 * 119.98865 * 4.72473 * 10 9 8 24 24 C 1.37982 * 119.93489 * 59.99599 * 5 2 1 25 25 H 1.09001 * 109.46915 * 299.99830 * 1 2 3 26 26 H 1.09000 * 109.47341 * 59.99354 * 1 2 3 27 27 H 1.08997 * 109.47256 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47291 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47378 * 300.00623 * 3 2 1 30 30 H 1.09001 * 109.46925 * 60.00176 * 3 2 1 31 31 H 1.08997 * 109.47239 * 300.00026 * 4 2 1 32 32 H 1.08998 * 109.47179 * 60.00484 * 4 2 1 33 33 H 1.09007 * 109.47022 * 179.97438 * 4 2 1 34 34 H 1.07999 * 119.87511 * 359.97438 * 6 5 2 35 35 H 1.07998 * 119.94023 * 179.97438 * 7 6 5 36 36 H 1.07994 * 120.06729 * 180.27578 * 8 7 6 37 37 H 1.08001 * 119.85816 * 0.05126 * 11 10 9 38 38 H 1.08002 * 120.02349 * 180.27422 * 13 12 11 39 39 H 0.97004 * 120.00087 * 180.02562 * 18 17 15 40 40 H 1.07996 * 120.06527 * 359.97438 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0324 -0.7105 1.2304 6 6 2.8281 -0.0370 2.1400 7 6 3.2925 -0.6825 3.2717 8 6 2.9598 -2.0021 3.5022 9 6 2.1637 -2.6874 2.5862 10 6 1.8080 -4.1072 2.8250 11 6 1.0914 -4.8215 1.8569 12 7 0.7708 -6.0870 2.0636 13 6 1.1274 -6.6895 3.1812 14 6 1.8435 -5.9804 4.1649 15 6 2.2232 -6.6208 5.3663 16 1 2.0516 -7.6797 5.4913 17 6 2.8218 -5.8821 6.3945 18 7 3.1408 -4.6295 6.1993 19 14 3.1646 -6.6869 8.0451 20 1 3.7987 -5.6995 8.9551 21 1 1.8886 -7.1604 8.6394 22 1 4.0793 -7.8409 7.8528 23 7 2.1680 -4.6992 3.9547 24 6 1.6983 -2.0316 1.4474 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6768 1.9563 0.8900 31 1 1.6765 -1.7489 -1.2493 32 1 1.6766 -0.2074 -2.1392 33 1 3.1300 -0.7209 -1.2496 34 1 3.0878 0.9967 1.9658 35 1 3.9136 -0.1521 3.9782 36 1 3.3192 -2.5039 4.3884 37 1 0.7999 -4.3364 0.9370 38 1 0.8670 -7.7250 3.3438 39 1 3.5558 -4.1180 6.9114 40 1 1.0770 -2.5562 0.7368 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241300841.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:48 Heat of formation + Delta-G solvation = 30.704180 kcal Electronic energy + Delta-G solvation = -21391.777649 eV Core-core repulsion = 18362.750792 eV Total energy + Delta-G solvation = -3029.026857 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.20019 -40.28678 -37.22826 -35.96935 -34.22673 -33.07380 -31.16588 -30.35311 -28.29219 -28.04918 -27.79906 -25.02065 -24.35046 -23.23055 -22.18552 -19.86586 -19.42577 -18.00690 -17.49744 -17.02153 -16.85369 -16.01040 -15.63365 -15.40949 -15.18762 -14.95849 -14.72566 -14.44771 -14.32099 -13.61076 -13.41618 -13.31015 -13.03640 -12.92060 -12.88662 -12.56549 -12.51045 -12.48564 -12.36624 -12.03733 -11.81521 -11.70259 -11.54259 -11.40090 -11.31752 -11.15891 -10.21653 -9.57220 -9.38858 -9.05583 -8.41694 -6.69328 -0.09030 0.57088 0.89747 1.23905 1.39877 1.52486 1.54960 2.17571 2.69500 3.02087 3.52234 3.75250 3.82027 3.96406 3.98579 4.19197 4.20180 4.32619 4.35113 4.46182 4.56905 4.64711 4.71768 4.83037 4.83905 4.93785 4.96493 5.01463 5.07457 5.09703 5.14685 5.18137 5.19745 5.26799 5.41674 5.43345 5.49617 5.64452 5.73514 5.77285 5.86597 6.10524 6.18250 6.46308 6.68217 7.25219 7.84864 8.28388 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.024186 B = 0.004526 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.402353 B = 6185.543823 C = 7136.682590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.026 4.026 3 C -0.140 4.140 4 C -0.139 4.139 5 C -0.078 4.078 6 C -0.113 4.113 7 C -0.128 4.128 8 C -0.105 4.105 9 C -0.052 4.052 10 C 0.127 3.873 11 C -0.119 4.119 12 N -0.438 5.438 13 C -0.086 4.086 14 C 0.176 3.824 15 C -0.438 4.438 16 H 0.104 0.896 17 C 0.023 3.977 18 N -0.742 5.742 19 Si 0.995 3.005 20 H -0.267 1.267 21 H -0.258 1.258 22 H -0.255 1.255 23 N -0.470 5.470 24 C -0.101 4.101 25 H 0.052 0.948 26 H 0.077 0.923 27 H 0.046 0.954 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.046 0.954 32 H 0.077 0.923 33 H 0.053 0.947 34 H 0.156 0.844 35 H 0.141 0.859 36 H 0.115 0.885 37 H 0.153 0.847 38 H 0.150 0.850 39 H 0.285 0.715 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.410 12.404 -6.516 14.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.026 4.026 3 C -0.197 4.197 4 C -0.196 4.196 5 C -0.078 4.078 6 C -0.131 4.131 7 C -0.146 4.146 8 C -0.124 4.124 9 C -0.054 4.054 10 C -0.020 4.020 11 C -0.278 4.278 12 N -0.149 5.149 13 C -0.255 4.255 14 C 0.049 3.951 15 C -0.469 4.469 16 H 0.122 0.878 17 C -0.201 4.201 18 N -0.362 5.362 19 Si 0.814 3.186 20 H -0.192 1.192 21 H -0.182 1.182 22 H -0.179 1.179 23 N -0.188 5.188 24 C -0.120 4.120 25 H 0.071 0.929 26 H 0.096 0.904 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.095 0.905 33 H 0.072 0.928 34 H 0.173 0.827 35 H 0.159 0.841 36 H 0.133 0.867 37 H 0.170 0.830 38 H 0.168 0.832 39 H 0.096 0.904 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.500 12.577 -6.425 14.132 hybrid contribution 0.071 -0.911 0.865 1.259 sum 0.571 11.665 -5.560 12.935 Atomic orbital electron populations 1.21903 0.93510 1.01785 1.02430 1.19531 0.95857 0.95809 0.91357 1.21943 1.01420 0.93568 1.02793 1.21903 1.01051 1.00029 0.96626 1.19981 0.97805 0.92840 0.97179 1.21526 0.97191 1.01017 0.93346 1.21339 1.00794 0.93652 0.98775 1.21507 0.96874 0.95237 0.98824 1.18745 0.99547 0.90719 0.96367 1.21303 0.93947 0.94733 0.92012 1.22921 1.10182 0.92446 1.02258 1.67668 1.16189 1.10205 1.20879 1.23435 1.07463 1.01292 0.93323 1.19862 0.91152 0.89479 0.94558 1.20066 1.32343 0.97404 0.97122 0.87824 1.27103 0.93226 0.95186 1.04569 1.70141 1.23132 1.08889 1.34077 0.85063 0.79675 0.78871 0.74984 1.19156 1.18211 1.17914 1.69543 1.21453 1.09931 1.17868 1.21083 0.99991 0.95027 0.95901 0.92924 0.90431 0.93521 0.91884 0.90827 0.91958 0.93465 0.90457 0.92829 0.82688 0.84139 0.86689 0.83006 0.83231 0.90411 0.85696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 8.29 71.98 0.60 -2.18 16 2 C -0.03 -0.53 0.85 -52.93 -0.05 -0.57 16 3 C -0.14 -2.18 7.13 71.98 0.51 -1.67 16 4 C -0.14 -2.74 8.29 71.98 0.60 -2.14 16 5 C -0.08 -2.19 4.76 -19.90 -0.09 -2.28 16 6 C -0.11 -3.02 8.97 22.31 0.20 -2.82 16 7 C -0.13 -4.07 10.03 22.24 0.22 -3.85 16 8 C -0.11 -4.40 9.58 22.49 0.22 -4.19 16 9 C -0.05 -2.28 5.87 -20.04 -0.12 -2.40 16 10 C 0.13 6.56 6.73 42.16 0.28 6.84 16 11 C -0.12 -5.90 10.61 85.08 0.90 -5.00 16 12 N -0.44 -22.75 10.47 -192.05 -2.01 -24.76 16 13 C -0.09 -4.56 10.98 85.32 0.94 -3.62 16 14 C 0.18 9.91 6.54 40.23 0.26 10.17 16 15 C -0.44 -23.09 9.15 23.47 0.21 -22.87 16 16 H 0.10 4.96 7.86 -2.91 -0.02 4.93 16 17 C 0.02 1.12 5.49 85.30 0.47 1.59 16 18 N -0.74 -38.37 11.51 21.84 0.25 -38.12 16 19 Si 0.99 36.26 29.56 68.60 2.03 38.29 16 20 H -0.27 -9.27 7.11 99.48 0.71 -8.56 16 21 H -0.26 -9.14 7.11 99.48 0.71 -8.44 16 22 H -0.26 -8.92 7.11 99.48 0.71 -8.22 16 23 N -0.47 -26.67 7.18 -177.64 -1.27 -27.94 16 24 C -0.10 -3.55 8.08 22.49 0.18 -3.36 16 25 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.05 1.04 7.38 -2.39 -0.02 1.02 16 28 H 0.06 0.94 7.51 -2.39 -0.02 0.92 16 29 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.06 0.93 7.51 -2.39 -0.02 0.92 16 31 H 0.05 1.04 7.38 -2.39 -0.02 1.02 16 32 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 34 H 0.16 3.03 5.88 -2.91 -0.02 3.01 16 35 H 0.14 3.69 8.06 -2.91 -0.02 3.66 16 36 H 0.12 5.52 7.56 -2.91 -0.02 5.50 16 37 H 0.15 6.47 6.22 -2.91 -0.02 6.45 16 38 H 0.15 7.08 8.06 -2.91 -0.02 7.05 16 39 H 0.29 13.24 8.29 -92.71 -0.77 12.47 16 40 H 0.13 4.16 5.26 -2.91 -0.02 4.15 16 Total: -1.00 -65.03 329.06 5.37 -59.65 By element: Atomic # 1 Polarization: 30.19 SS G_CDS: 1.04 Total: 31.24 kcal Atomic # 6 Polarization: -43.70 SS G_CDS: 5.34 Total: -38.36 kcal Atomic # 7 Polarization: -87.78 SS G_CDS: -3.03 Total: -90.82 kcal Atomic # 14 Polarization: 36.26 SS G_CDS: 2.03 Total: 38.29 kcal Total: -65.03 5.37 -59.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241300841.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.358 kcal (2) G-P(sol) polarization free energy of solvation -65.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds