Wall clock time and date at job start Tue Mar 31 2020 05:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47139 * 2 1 4 4 C 1.53000 * 109.47193 * 240.00287 * 2 1 3 5 5 C 1.50699 * 109.47298 * 119.99985 * 2 1 3 6 6 C 1.38436 * 119.92185 * 0.02562 * 5 2 1 7 7 C 1.38391 * 120.29459 * 180.02562 * 6 5 2 8 8 C 1.37939 * 120.15184 * 0.27938 * 7 6 5 9 9 C 1.39637 * 119.84579 * 359.44823 * 8 7 6 10 10 C 1.47937 * 120.14604 * 180.25397 * 9 8 7 11 11 C 1.40435 * 120.78674 * 180.02562 * 10 9 8 12 12 N 1.31592 * 119.08558 * 179.75707 * 11 10 9 13 13 C 1.33640 * 120.83415 * 0.53357 * 12 11 10 14 14 C 1.41095 * 119.13296 * 179.69989 * 13 12 11 15 15 H 1.08002 * 119.99607 * 180.02562 * 14 13 12 16 16 C 1.40139 * 120.00010 * 0.02562 * 14 13 12 17 17 N 1.30660 * 120.00405 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00040 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46959 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47428 * 119.99645 * 18 16 14 21 21 H 1.48499 * 109.46945 * 239.99862 * 18 16 14 22 22 N 1.33644 * 121.73187 * 359.71825 * 13 12 11 23 23 C 1.31582 * 120.83286 * 0.02562 * 22 13 12 24 24 C 1.37895 * 119.92672 * 180.02562 * 5 2 1 25 25 H 1.09004 * 109.46930 * 299.99933 * 1 2 3 26 26 H 1.08996 * 109.46732 * 59.99813 * 1 2 3 27 27 H 1.08997 * 109.47004 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47347 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.47094 * 300.00397 * 3 2 1 30 30 H 1.09004 * 109.47155 * 60.00205 * 3 2 1 31 31 H 1.09003 * 109.46721 * 299.99961 * 4 2 1 32 32 H 1.08999 * 109.47010 * 59.99621 * 4 2 1 33 33 H 1.09001 * 109.47496 * 180.02562 * 4 2 1 34 34 H 1.07997 * 119.85385 * 0.03939 * 6 5 2 35 35 H 1.08002 * 119.92026 * 179.97438 * 7 6 5 36 36 H 1.07998 * 120.07808 * 179.70421 * 8 7 6 37 37 H 1.07995 * 120.45388 * 0.02562 * 11 10 9 38 38 H 0.96996 * 120.00662 * 180.02562 * 17 16 14 39 39 H 1.08000 * 120.45629 * 180.02562 * 23 22 13 40 40 H 1.08004 * 120.07491 * 359.95836 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2304 6 6 1.1314 -1.2364 2.1404 7 6 1.5843 -1.8898 3.2732 8 6 2.9381 -2.0160 3.5056 9 6 3.8523 -1.4928 2.5890 10 6 5.3057 -1.6294 2.8288 11 6 6.2370 -1.1078 1.9162 12 7 7.5219 -1.2441 2.1652 13 6 7.9433 -1.8780 3.2636 14 6 9.3295 -2.0090 3.4919 15 1 9.6855 -2.5190 4.3748 16 6 10.2443 -1.4774 2.5730 17 7 9.8137 -0.8608 1.5045 18 14 12.0796 -1.6515 2.8748 19 1 12.3047 -2.3857 4.1458 20 1 12.6968 -2.4030 1.7526 21 1 12.6962 -0.3037 2.9664 22 7 7.0863 -2.3914 4.1513 23 6 5.7869 -2.2891 3.9713 24 6 3.3885 -0.8350 1.4474 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1301 1.4426 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6768 1.9564 0.8900 31 1 1.6767 -1.7489 -1.2493 32 1 1.6767 -0.2073 -2.1392 33 1 3.1301 -0.7216 -1.2491 34 1 0.0704 -1.1365 1.9654 35 1 0.8760 -2.2974 3.9793 36 1 3.2901 -2.5220 4.3924 37 1 5.9031 -0.5982 1.0245 38 1 10.4468 -0.4932 0.8683 39 1 5.0998 -2.7059 4.6928 40 1 4.0903 -0.4248 0.7363 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241301947.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:11 Heat of formation + Delta-G solvation = 47.911798 kcal Electronic energy + Delta-G solvation = -21089.676848 eV Core-core repulsion = 18061.396170 eV Total energy + Delta-G solvation = -3028.280678 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.65605 -38.71147 -36.12045 -34.00542 -32.17090 -31.72206 -29.82732 -28.93627 -27.43440 -27.16870 -25.84298 -23.57558 -22.61208 -21.74190 -20.64671 -18.71278 -17.97090 -16.70306 -16.08648 -15.25580 -14.88361 -14.59540 -14.29840 -14.19273 -13.96554 -13.32382 -13.17133 -13.13095 -12.75629 -12.50666 -12.36304 -11.98455 -11.87102 -11.63419 -11.51599 -11.39183 -11.28903 -11.24956 -10.88625 -10.86998 -10.53502 -10.31471 -10.18792 -9.74415 -9.28691 -9.20467 -8.91675 -8.29472 -7.43260 -7.34927 -6.70847 -4.83326 1.54860 1.88023 2.69115 2.91885 2.96703 3.03035 3.06054 3.75396 4.26542 4.61756 4.73385 4.87104 5.07407 5.36514 5.40328 5.46175 5.54344 5.59490 5.66923 5.70861 5.79798 5.82216 5.83860 5.88088 5.90873 5.94384 6.01847 6.10004 6.14733 6.21963 6.34570 6.37161 6.42708 6.57315 6.74978 6.83977 6.97187 7.00657 7.08504 7.44783 7.47219 7.60354 8.00047 8.32759 8.40688 8.97464 9.93708 10.12870 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.026774 B = 0.003854 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.556538 B = 7263.119114 C = 8117.609384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.029 4.029 3 C -0.138 4.138 4 C -0.138 4.138 5 C -0.061 4.061 6 C -0.162 4.162 7 C -0.108 4.108 8 C -0.152 4.152 9 C 0.039 3.961 10 C -0.330 4.330 11 C 0.182 3.818 12 N -0.508 5.508 13 C 0.379 3.621 14 C -0.376 4.376 15 H 0.097 0.903 16 C 0.060 3.940 17 N -0.696 5.696 18 Si 0.922 3.078 19 H -0.256 1.256 20 H -0.270 1.270 21 H -0.270 1.270 22 N -0.593 5.593 23 C 0.187 3.813 24 C -0.139 4.139 25 H 0.057 0.943 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.115 0.885 35 H 0.111 0.889 36 H 0.115 0.885 37 H 0.130 0.870 38 H 0.279 0.721 39 H 0.132 0.868 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.237 2.131 -3.734 12.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.029 4.029 3 C -0.195 4.195 4 C -0.195 4.195 5 C -0.061 4.061 6 C -0.180 4.180 7 C -0.126 4.126 8 C -0.170 4.170 9 C 0.038 3.962 10 C -0.340 4.340 11 C 0.005 3.995 12 N -0.224 5.224 13 C 0.147 3.853 14 C -0.410 4.410 15 H 0.115 0.885 16 C -0.168 4.168 17 N -0.316 5.316 18 Si 0.745 3.255 19 H -0.179 1.179 20 H -0.194 1.194 21 H -0.195 1.195 22 N -0.312 5.312 23 C 0.012 3.988 24 C -0.157 4.157 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.132 0.868 35 H 0.129 0.871 36 H 0.133 0.867 37 H 0.148 0.852 38 H 0.090 0.910 39 H 0.149 0.851 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -10.946 2.148 -3.752 11.769 hybrid contribution -0.311 0.041 -0.075 0.322 sum -11.257 2.189 -3.827 12.089 Atomic orbital electron populations 1.21930 0.94636 1.01704 1.01445 1.19469 0.95233 0.95038 0.93127 1.21886 1.01579 0.94692 1.01376 1.21886 1.01578 1.00087 0.95982 1.19577 0.93251 0.98002 0.95261 1.20927 0.98835 1.02544 0.95743 1.20904 0.95292 0.99171 0.97202 1.21118 0.92728 1.03122 1.00057 1.18683 0.92079 0.92954 0.92525 1.19772 0.92175 1.18403 1.03604 1.23048 0.89637 0.91459 0.95399 1.69347 1.13398 1.18978 1.20673 1.19976 0.93929 0.87090 0.84346 1.19554 0.87964 1.27549 1.05884 0.88485 1.26234 1.02376 0.93902 0.94325 1.70127 1.36620 1.18932 1.05968 0.86023 0.80251 0.79237 0.80013 1.17931 1.19449 1.19454 1.68650 1.02661 1.26600 1.33244 1.22691 0.92369 0.90761 0.92951 1.20934 0.94434 1.02204 0.98166 0.92427 0.92845 0.92430 0.92157 0.92759 0.92639 0.92639 0.92758 0.92157 0.86754 0.87089 0.86670 0.85247 0.90987 0.85068 0.86573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 7.13 37.16 0.26 -1.14 16 2 C -0.03 -0.34 0.85 -155.66 -0.13 -0.48 16 3 C -0.14 -1.59 8.29 37.16 0.31 -1.28 16 4 C -0.14 -1.59 8.29 37.16 0.31 -1.28 16 5 C -0.06 -0.90 4.76 -104.68 -0.50 -1.39 16 6 C -0.16 -2.29 8.98 -39.45 -0.35 -2.64 16 7 C -0.11 -1.58 10.03 -39.63 -0.40 -1.97 16 8 C -0.15 -2.56 9.45 -39.17 -0.37 -2.93 16 9 C 0.04 0.75 5.88 -104.87 -0.62 0.13 16 10 C -0.33 -7.32 5.94 -104.27 -0.62 -7.94 16 11 C 0.18 4.33 10.70 -16.83 -0.18 4.15 16 12 N -0.51 -13.83 7.83 -12.41 -0.10 -13.92 16 13 C 0.38 10.54 7.35 -158.17 -1.16 9.38 16 14 C -0.38 -10.03 9.35 -37.79 -0.35 -10.38 16 15 H 0.10 2.47 7.85 -52.49 -0.41 2.06 16 16 C 0.06 1.47 5.50 -17.34 -0.10 1.37 16 17 N -0.70 -17.67 11.40 55.56 0.63 -17.03 16 18 Si 0.92 17.74 29.56 -169.99 -5.02 12.71 16 19 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 20 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 21 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 22 N -0.59 -15.60 10.34 -12.41 -0.13 -15.72 16 23 C 0.19 4.31 10.70 -16.83 -0.18 4.13 16 24 C -0.14 -2.37 8.11 -39.17 -0.32 -2.69 16 25 H 0.06 0.56 7.51 -51.93 -0.39 0.17 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.56 7.51 -51.93 -0.39 0.17 16 28 H 0.06 0.74 7.38 -51.93 -0.38 0.36 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.74 7.38 -51.93 -0.38 0.36 16 34 H 0.11 1.36 5.87 -52.49 -0.31 1.05 16 35 H 0.11 1.34 8.06 -52.49 -0.42 0.91 16 36 H 0.12 1.81 6.29 -52.49 -0.33 1.48 16 37 H 0.13 2.73 6.33 -52.49 -0.33 2.40 16 38 H 0.28 6.28 8.29 -40.82 -0.34 5.94 16 39 H 0.13 2.56 6.33 -52.49 -0.33 2.23 16 40 H 0.12 1.94 5.32 -52.48 -0.28 1.66 16 LS Contribution 326.59 15.07 4.92 4.92 Total: -1.00 -29.01 326.59 -9.30 -38.31 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -5.21 Total: 5.70 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: -4.40 Total: -14.97 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: 0.41 Total: -46.68 kcal Atomic # 14 Polarization: 17.74 SS G_CDS: -5.02 Total: 12.71 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.01 -9.30 -38.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241301947.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.224 kcal (2) G-P(sol) polarization free energy of solvation -29.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds